Wall clock time and date at job start Tue Mar 31 2020 09:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.52999 * 109.46981 * 240.00424 * 2 1 3 5 5 N 1.46497 * 109.47263 * 64.99650 * 4 2 1 6 6 C 1.36935 * 119.99887 * 179.72633 * 5 4 2 7 7 H 1.08006 * 120.00174 * 0.27393 * 6 5 4 8 8 C 1.38812 * 120.00016 * 180.27720 * 6 5 4 9 9 N 1.31621 * 119.99863 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00061 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46996 * 89.99913 * 10 8 6 12 12 H 1.48501 * 109.47390 * 210.00075 * 10 8 6 13 13 H 1.48500 * 109.46946 * 330.00128 * 10 8 6 14 14 C 1.53001 * 109.47167 * 119.99864 * 2 1 3 15 15 N 1.46496 * 109.47548 * 294.99983 * 14 2 1 16 16 C 1.34768 * 120.00230 * 179.97438 * 15 14 2 17 17 O 1.21284 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00289 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47466 * 174.51316 * 18 16 15 20 20 C 1.52999 * 115.54716 * 277.39987 * 19 18 16 21 21 F 1.39901 * 109.47222 * 64.35773 * 20 19 18 22 22 F 1.39905 * 109.46638 * 184.35381 * 20 19 18 23 23 F 1.39892 * 109.47285 * 304.35034 * 20 19 18 24 24 C 1.52999 * 117.49902 * 131.69339 * 19 18 16 25 25 C 1.52999 * 117.49754 * 63.06931 * 19 18 16 26 26 H 1.09002 * 109.46607 * 299.99756 * 1 2 3 27 27 H 1.08996 * 109.47286 * 59.99357 * 1 2 3 28 28 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46571 * 304.99644 * 4 2 1 30 30 H 1.09000 * 109.47020 * 184.99811 * 4 2 1 31 31 H 0.97000 * 119.99986 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99817 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47041 * 55.00175 * 14 2 1 34 34 H 1.09004 * 109.46727 * 174.99500 * 14 2 1 35 35 H 0.97008 * 119.99766 * 359.97438 * 15 14 2 36 36 H 1.08997 * 109.47381 * 294.51560 * 18 16 15 37 37 H 1.09000 * 109.47146 * 54.51098 * 18 16 15 38 38 H 1.09007 * 117.49794 * 0.02562 * 24 19 18 39 39 H 1.08997 * 117.50082 * 145.02298 * 24 19 18 40 40 H 1.08995 * 117.50137 * 214.98115 * 25 19 18 41 41 H 1.09005 * 117.49560 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0062 -0.4175 -3.6852 7 1 2.5673 -1.3348 -3.7862 8 6 1.6439 0.3025 -4.8154 9 7 1.9837 -0.1332 -6.0101 10 14 0.6730 1.8887 -4.6409 11 1 1.6119 3.0326 -4.5172 12 1 -0.1839 2.0789 -5.8387 13 1 -0.1807 1.8156 -3.4281 14 6 2.0401 -0.7212 1.2493 15 7 1.6526 0.0353 2.4424 16 6 1.9957 -0.4136 3.6659 17 8 2.6249 -1.4443 3.7793 18 6 1.5966 0.3643 4.8933 19 6 1.9854 -0.4240 6.1457 20 6 0.9961 -1.5090 6.5759 21 9 0.9314 -2.4989 5.5894 22 9 1.4232 -2.0782 7.7804 23 9 -0.2706 -0.9420 6.7515 24 6 2.7354 0.3262 7.2481 25 6 3.4736 -0.6927 6.3775 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 1.1488 0.8595 -2.3517 32 1 1.7302 0.3697 -6.7999 33 1 1.6055 -1.7198 1.2952 34 1 3.1264 -0.7995 1.2055 35 1 1.1490 0.8595 2.3518 36 1 2.1087 1.3265 4.8962 37 1 0.5187 0.5265 4.8861 38 1 2.9516 1.3815 7.0814 39 1 2.5242 0.0469 8.2803 40 1 3.7480 -1.6423 6.8370 41 1 4.1758 -0.3075 5.6381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:19 Heat of formation + Delta-G solvation = -160.345206 kcal Electronic energy + Delta-G solvation = -25731.664152 eV Core-core repulsion = 21425.590258 eV Total energy + Delta-G solvation = -4306.073894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.31707 -47.89909 -47.71220 -40.17813 -38.04942 -36.82052 -34.50768 -32.61015 -30.82419 -29.93767 -27.13073 -26.50282 -25.31851 -23.07865 -22.20940 -21.26916 -20.60198 -19.99949 -18.65251 -18.51158 -17.94600 -17.61279 -16.93437 -16.10139 -15.70778 -15.29878 -14.73211 -14.69553 -14.51099 -14.39178 -14.25345 -14.11882 -13.93989 -13.91536 -13.84547 -13.62728 -13.20953 -12.97203 -12.51417 -12.37567 -12.20277 -12.09739 -11.88326 -11.47165 -11.15666 -11.06509 -10.90124 -10.78351 -10.64886 -10.61780 -10.16563 -9.89112 -9.59844 -9.13008 -8.92306 -7.25492 -5.78483 -3.14284 2.39871 2.48647 2.68508 3.16650 3.33737 3.35989 3.42538 3.46959 3.59427 3.96591 4.04496 4.36492 4.41069 4.56526 4.71263 4.85683 4.92476 4.99049 5.06786 5.07928 5.17280 5.21437 5.43733 5.52145 5.57358 5.63812 5.71464 5.84873 5.86493 6.06152 6.20938 6.35745 6.43400 6.62901 6.72608 7.34540 7.97812 8.07416 8.40429 9.19184 9.91204 10.10847 11.40008 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.002442 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.568363 B =11463.097807 C =11522.486464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.726 5.726 16 C 0.505 3.495 17 O -0.523 6.523 18 C -0.104 4.104 19 C -0.189 4.189 20 C 0.489 3.511 21 F -0.166 7.166 22 F -0.183 7.183 23 F -0.183 7.183 24 C -0.149 4.149 25 C -0.118 4.118 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 3.557 30.518 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.378 5.378 16 C 0.290 3.710 17 O -0.399 6.399 18 C -0.144 4.144 19 C -0.191 4.191 20 C 0.434 3.566 21 F -0.147 7.147 22 F -0.165 7.165 23 F -0.165 7.165 24 C -0.186 4.186 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.920 2.607 30.406 30.531 hybrid contribution -1.283 1.378 -0.141 1.888 sum -2.203 3.985 30.265 30.605 Atomic orbital electron populations 1.21820 0.94763 1.02310 1.01224 1.21608 0.96637 1.00503 0.94624 0.90621 1.20551 0.97189 0.94259 0.84296 1.42682 1.67573 1.27387 1.02382 1.19068 1.29386 1.07149 0.81787 0.89172 1.24682 1.00788 0.98666 0.95107 1.69703 1.51306 1.40227 0.96965 0.86537 0.80230 0.84803 0.76850 1.21109 1.21718 1.20386 1.21390 1.00261 0.95328 0.82604 1.46034 1.57937 1.27917 1.05942 1.20387 0.80094 0.86017 0.84456 1.90750 1.39078 1.23629 1.86446 1.21154 1.04389 0.99100 0.89739 1.22010 0.95789 1.00845 1.00449 1.19379 0.80152 0.82265 0.74757 1.93272 1.96324 1.63568 1.61571 1.93153 1.89748 1.86342 1.47215 1.93168 1.43120 1.84856 1.95315 1.23328 1.00647 0.99070 0.95535 1.23017 0.90144 1.01056 1.01320 0.93674 0.91780 0.92365 0.95150 0.95240 0.80645 0.93040 0.91122 0.91137 0.76629 0.86878 0.87747 0.86857 0.87288 0.87428 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 2 C -0.11 -1.58 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 5 N -0.75 -17.53 5.13 -59.91 -0.31 -17.84 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 10 Si 0.89 21.81 27.73 -169.99 -4.71 17.09 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 14 C 0.13 1.58 5.06 -4.04 -0.02 1.56 16 15 N -0.73 -7.18 5.28 -60.30 -0.32 -7.50 16 16 C 0.51 5.36 7.44 -10.99 -0.08 5.28 16 17 O -0.52 -7.48 13.98 5.55 0.08 -7.40 16 18 C -0.10 -0.72 5.63 -27.88 -0.16 -0.88 16 19 C -0.19 -1.50 1.34 -154.51 -0.21 -1.71 16 20 C 0.49 4.93 3.07 37.16 0.11 5.04 16 21 F -0.17 -2.14 15.81 2.25 0.04 -2.11 16 22 F -0.18 -1.82 15.90 2.25 0.04 -1.78 16 23 F -0.18 -1.82 16.80 2.25 0.04 -1.78 16 24 C -0.15 -0.78 9.60 -26.73 -0.26 -1.04 16 25 C -0.12 -0.87 8.49 -26.73 -0.23 -1.10 16 26 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 27 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.40 2.95 7.66 -40.82 -0.31 2.64 16 36 H 0.11 0.48 7.92 -51.93 -0.41 0.07 16 37 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 38 H 0.11 0.37 8.07 -51.93 -0.42 -0.04 16 39 H 0.11 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.11 0.83 7.91 -51.93 -0.41 0.42 16 41 H 0.11 0.84 8.13 -51.93 -0.42 0.41 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -33.84 348.31 -5.97 -39.81 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.84 Total: 5.05 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.00 Total: -0.22 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.15 Total: -53.92 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.11 Total: -5.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.84 -5.97 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.534 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds