Wall clock time and date at job start Tue Mar 31 2020 09:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.52999 * 109.46981 * 240.00424 * 2 1 3 5 5 N 1.46497 * 109.47263 * 64.99650 * 4 2 1 6 6 C 1.36935 * 119.99887 * 179.72633 * 5 4 2 7 7 H 1.08006 * 120.00174 * 0.27393 * 6 5 4 8 8 C 1.38812 * 120.00016 * 180.27720 * 6 5 4 9 9 N 1.31621 * 119.99863 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00061 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46996 * 89.99913 * 10 8 6 12 12 H 1.48501 * 109.47390 * 210.00075 * 10 8 6 13 13 H 1.48500 * 109.46946 * 330.00128 * 10 8 6 14 14 C 1.53001 * 109.47167 * 119.99864 * 2 1 3 15 15 N 1.46496 * 109.47548 * 294.99983 * 14 2 1 16 16 C 1.34768 * 120.00230 * 179.97438 * 15 14 2 17 17 O 1.21284 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00289 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47466 * 174.51316 * 18 16 15 20 20 C 1.52999 * 115.54716 * 277.39987 * 19 18 16 21 21 F 1.39901 * 109.47222 * 64.35773 * 20 19 18 22 22 F 1.39905 * 109.46638 * 184.35381 * 20 19 18 23 23 F 1.39892 * 109.47285 * 304.35034 * 20 19 18 24 24 C 1.52999 * 117.49902 * 131.69339 * 19 18 16 25 25 C 1.52999 * 117.49754 * 63.06931 * 19 18 16 26 26 H 1.09002 * 109.46607 * 299.99756 * 1 2 3 27 27 H 1.08996 * 109.47286 * 59.99357 * 1 2 3 28 28 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46571 * 304.99644 * 4 2 1 30 30 H 1.09000 * 109.47020 * 184.99811 * 4 2 1 31 31 H 0.97000 * 119.99986 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99817 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47041 * 55.00175 * 14 2 1 34 34 H 1.09004 * 109.46727 * 174.99500 * 14 2 1 35 35 H 0.97008 * 119.99766 * 359.97438 * 15 14 2 36 36 H 1.08997 * 109.47381 * 294.51560 * 18 16 15 37 37 H 1.09000 * 109.47146 * 54.51098 * 18 16 15 38 38 H 1.09007 * 117.49794 * 0.02562 * 24 19 18 39 39 H 1.08997 * 117.50082 * 145.02298 * 24 19 18 40 40 H 1.08995 * 117.50137 * 214.98115 * 25 19 18 41 41 H 1.09005 * 117.49560 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0062 -0.4175 -3.6852 7 1 2.5673 -1.3348 -3.7862 8 6 1.6439 0.3025 -4.8154 9 7 1.9837 -0.1332 -6.0101 10 14 0.6730 1.8887 -4.6409 11 1 1.6119 3.0326 -4.5172 12 1 -0.1839 2.0789 -5.8387 13 1 -0.1807 1.8156 -3.4281 14 6 2.0401 -0.7212 1.2493 15 7 1.6526 0.0353 2.4424 16 6 1.9957 -0.4136 3.6659 17 8 2.6249 -1.4443 3.7793 18 6 1.5966 0.3643 4.8933 19 6 1.9854 -0.4240 6.1457 20 6 0.9961 -1.5090 6.5759 21 9 0.9314 -2.4989 5.5894 22 9 1.4232 -2.0782 7.7804 23 9 -0.2706 -0.9420 6.7515 24 6 2.7354 0.3262 7.2481 25 6 3.4736 -0.6927 6.3775 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 1.1488 0.8595 -2.3517 32 1 1.7302 0.3697 -6.7999 33 1 1.6055 -1.7198 1.2952 34 1 3.1264 -0.7995 1.2055 35 1 1.1490 0.8595 2.3518 36 1 2.1087 1.3265 4.8962 37 1 0.5187 0.5265 4.8861 38 1 2.9516 1.3815 7.0814 39 1 2.5242 0.0469 8.2803 40 1 3.7480 -1.6423 6.8370 41 1 4.1758 -0.3075 5.6381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:19 Heat of formation + Delta-G solvation = -183.491617 kcal Electronic energy + Delta-G solvation = -25732.667856 eV Core-core repulsion = 21425.590258 eV Total energy + Delta-G solvation = -4307.077598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.09653 -48.65688 -48.55362 -40.96831 -38.82285 -37.96635 -35.97649 -34.16029 -32.51186 -30.72835 -27.95540 -27.71751 -26.69374 -24.00067 -23.52367 -22.10800 -21.62151 -21.05771 -19.66737 -19.39747 -19.29867 -18.49553 -17.82234 -17.13172 -16.60402 -16.42619 -15.99050 -15.70357 -15.56352 -15.48982 -15.13742 -15.04568 -15.02868 -14.77141 -14.73660 -14.58991 -14.54350 -14.16190 -13.88054 -13.65253 -13.27559 -13.06245 -12.85590 -12.58834 -12.44264 -12.18760 -12.08942 -11.99609 -11.75663 -11.73485 -11.67117 -11.40396 -10.98713 -10.74648 -10.03115 -9.30755 -8.03055 -5.37429 1.37414 1.42862 1.50214 1.69248 1.73195 2.03634 2.48882 2.49376 2.79971 2.94148 3.28068 3.39654 3.45778 3.56559 3.72534 3.80726 3.94296 4.00482 4.10654 4.20081 4.49903 4.51643 4.54298 4.69486 4.70411 4.72342 4.81100 4.93302 4.95960 5.02353 5.09712 5.12501 5.29595 5.40605 5.50651 5.74871 6.20556 6.60682 7.07565 7.31999 7.82289 8.03494 9.18675 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.002442 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.568363 B =11463.097807 C =11522.486464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.139 3.861 15 N -0.716 5.716 16 C 0.500 3.500 17 O -0.566 6.566 18 C -0.096 4.096 19 C -0.204 4.204 20 C 0.481 3.519 21 F -0.189 7.189 22 F -0.186 7.186 23 F -0.183 7.183 24 C -0.118 4.118 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.369 0.631 32 H 0.258 0.742 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.415 0.585 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 6.672 33.119 33.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.109 0.891 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.787 3.213 11 H -0.201 1.201 12 H -0.224 1.224 13 H -0.170 1.170 14 C 0.014 3.986 15 N -0.369 5.369 16 C 0.288 3.712 17 O -0.445 6.445 18 C -0.135 4.135 19 C -0.206 4.206 20 C 0.427 3.573 21 F -0.170 7.170 22 F -0.168 7.168 23 F -0.164 7.164 24 C -0.154 4.154 25 C -0.170 4.170 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.253 0.747 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.077 5.742 33.073 33.632 hybrid contribution -0.866 0.255 -0.908 1.280 sum -2.943 5.996 32.166 32.852 Atomic orbital electron populations 1.21806 0.93831 1.02109 1.02154 1.21394 0.97194 1.00549 0.92479 0.89074 1.20710 0.96930 0.94120 0.85067 1.42620 1.67516 1.27962 1.01884 1.19034 1.28109 1.05702 0.84131 0.93038 1.25605 1.02657 1.03115 0.94508 1.69905 1.53398 1.42317 0.98029 0.85336 0.78805 0.79472 0.77718 1.20117 1.22394 1.16963 1.21054 0.99503 0.94859 0.83193 1.45873 1.57876 1.28193 1.04998 1.21109 0.79086 0.85663 0.85392 1.90743 1.41011 1.25652 1.87049 1.21233 1.05763 0.99582 0.86928 1.22126 0.95194 1.01069 1.02228 1.19820 0.80791 0.82452 0.74270 1.93225 1.96477 1.64779 1.62536 1.93140 1.89764 1.86549 1.47332 1.93161 1.43304 1.84679 1.95282 1.23491 0.97118 0.99967 0.94830 1.23005 0.89971 1.01638 1.02389 0.90025 0.93463 0.93235 0.96136 0.95820 0.79716 0.93293 0.92606 0.92116 0.74726 0.83185 0.86127 0.83859 0.86855 0.88721 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.94 71.98 0.64 -2.70 16 2 C -0.10 -2.47 2.46 -10.79 -0.03 -2.49 16 3 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.16 5.85 5.65 86.38 0.49 6.34 16 5 N -0.75 -34.45 5.13 -343.45 -1.76 -36.21 16 6 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 7 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 8 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 9 N -0.99 -63.65 13.97 21.65 0.30 -63.35 16 10 Si 0.96 44.47 27.73 68.60 1.90 46.37 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.25 -9.95 6.52 99.48 0.65 -9.30 16 14 C 0.14 3.24 5.06 86.38 0.44 3.68 16 15 N -0.72 -12.13 5.28 -463.07 -2.45 -14.58 16 16 C 0.50 9.53 7.44 87.66 0.65 10.18 16 17 O -0.57 -15.87 13.98 -3.04 -0.04 -15.91 16 18 C -0.10 -0.99 5.63 29.85 0.17 -0.82 16 19 C -0.20 -2.76 1.34 -52.18 -0.07 -2.83 16 20 C 0.48 9.17 3.07 71.98 0.22 9.39 16 21 F -0.19 -4.88 15.81 44.97 0.71 -4.17 16 22 F -0.19 -3.59 15.90 44.97 0.71 -2.87 16 23 F -0.18 -3.32 16.80 44.97 0.76 -2.56 16 24 C -0.12 -0.84 9.60 30.60 0.29 -0.55 16 25 C -0.13 -1.76 8.49 30.60 0.26 -1.50 16 26 H 0.08 1.33 7.18 -2.39 -0.02 1.31 16 27 H 0.05 1.29 7.18 -2.39 -0.02 1.27 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.37 15.61 4.71 -92.71 -0.44 15.17 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.42 4.34 7.66 -92.70 -0.71 3.64 16 36 H 0.15 0.46 7.92 -2.39 -0.02 0.44 16 37 H 0.12 0.91 7.66 -2.39 -0.02 0.89 16 38 H 0.14 0.20 8.07 -2.38 -0.02 0.18 16 39 H 0.11 0.75 7.65 -2.39 -0.02 0.73 16 40 H 0.09 1.46 7.91 -2.39 -0.02 1.44 16 41 H 0.11 1.49 8.13 -2.38 -0.02 1.47 16 Total: -1.00 -76.76 348.31 4.41 -72.36 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.14 Total: 18.62 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.41 Total: 2.31 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.91 Total: -114.14 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.04 Total: -15.91 kcal Atomic # 9 Polarization: -11.79 SS G_CDS: 2.18 Total: -9.60 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Total: -76.76 4.41 -72.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.136 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds