Wall clock time and date at job start Tue Mar 31 2020 09:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.53000 * 109.46745 * 119.99248 * 2 1 3 5 5 N 1.46500 * 109.47366 * 295.00548 * 4 2 1 6 6 C 1.36944 * 120.00066 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.38804 * 119.99849 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00384 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99745 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46918 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46915 * 120.00029 * 10 8 6 13 13 H 1.48497 * 109.46956 * 239.99682 * 10 8 6 14 14 C 1.52997 * 109.47509 * 239.99499 * 2 1 3 15 15 N 1.46493 * 109.47044 * 64.99926 * 14 2 1 16 16 C 1.34783 * 120.00224 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99666 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.46690 * 186.04476 * 18 16 15 20 20 C 1.53001 * 115.56384 * 80.52186 * 19 18 16 21 21 F 1.39900 * 109.46769 * 279.96972 * 20 19 18 22 22 F 1.39901 * 109.47071 * 39.97034 * 20 19 18 23 23 F 1.39894 * 109.47279 * 159.97326 * 20 19 18 24 24 C 1.52999 * 117.49701 * 294.82614 * 19 18 16 25 25 C 1.52997 * 60.00270 * 252.51185 * 24 19 18 26 26 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47630 * 300.00537 * 1 2 3 28 28 H 1.09001 * 109.46921 * 60.01217 * 1 2 3 29 29 H 1.09003 * 109.47423 * 55.00781 * 4 2 1 30 30 H 1.09004 * 109.46868 * 175.00167 * 4 2 1 31 31 H 0.96995 * 119.99898 * 359.97438 * 5 4 2 32 32 H 0.96995 * 120.00189 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47153 * 304.99653 * 14 2 1 34 34 H 1.08998 * 109.46978 * 184.99738 * 14 2 1 35 35 H 0.97009 * 120.00335 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47469 * 66.04620 * 18 16 15 37 37 H 1.08999 * 109.47288 * 306.04362 * 18 16 15 38 38 H 1.09010 * 117.49478 * 145.02267 * 24 19 18 39 39 H 1.08999 * 117.50381 * 0.02562 * 24 19 18 40 40 H 1.08997 * 117.49911 * 107.48857 * 25 24 19 41 41 H 1.08997 * 117.50136 * 252.51129 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6522 0.0356 2.4424 6 6 2.0017 -0.4200 3.6857 7 1 2.5634 -1.3368 3.7866 8 6 1.6348 0.2973 4.8160 9 7 0.9515 1.4154 4.6929 10 14 2.1109 -0.3245 6.5120 11 1 2.8709 -1.5933 6.3787 12 1 2.9567 0.6895 7.1916 13 1 0.8841 -0.5636 7.3140 14 6 2.0401 -0.7213 -1.2491 15 7 1.6526 0.0351 -2.4423 16 6 1.9967 -0.4134 -3.6658 17 8 2.6267 -1.4434 -3.7790 18 6 1.5985 0.3652 -4.8932 19 6 1.9757 -0.4290 -6.1454 20 6 1.0010 -1.5401 -6.5410 21 9 1.2346 -2.6692 -5.7486 22 9 -0.3125 -1.0987 -6.3482 23 9 1.1898 -1.8683 -7.8877 24 6 3.4638 -0.6676 -6.4089 25 6 2.6833 0.3246 -7.2733 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6054 -1.7197 1.2954 30 1 3.1263 -0.7993 1.2058 31 1 1.1487 0.8596 2.3517 32 1 0.6948 1.9164 5.4828 33 1 1.6056 -1.7199 -1.2949 34 1 3.1264 -0.7994 -1.2054 35 1 1.1489 0.8593 -2.3518 36 1 2.1183 1.3232 -4.9003 37 1 0.5220 0.5359 -4.8817 38 1 3.7484 -1.6164 -6.8641 39 1 4.1741 -0.2593 -5.6901 40 1 2.8801 1.3861 -7.1233 41 1 2.4546 0.0288 -8.2971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:24 Heat of formation + Delta-G solvation = -164.465819 kcal Electronic energy + Delta-G solvation = -25663.163736 eV Core-core repulsion = 21356.911159 eV Total energy + Delta-G solvation = -4306.252577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.28056 -47.87348 -47.66012 -40.10792 -37.98554 -36.67700 -34.36964 -32.57331 -30.53602 -29.66286 -27.06661 -26.29978 -25.12696 -23.04801 -22.56067 -21.24908 -20.50193 -19.80441 -18.61968 -18.47261 -17.87178 -17.30960 -16.74467 -16.02505 -15.64235 -15.22738 -14.69497 -14.64081 -14.48627 -14.36746 -14.21080 -14.00442 -13.88857 -13.83121 -13.77603 -13.55006 -13.04976 -12.88525 -12.49322 -12.21584 -12.09101 -12.01857 -11.81813 -11.12685 -11.07167 -10.93109 -10.86717 -10.72383 -10.58132 -10.43021 -10.05997 -9.84884 -9.67041 -9.05238 -8.89404 -6.93563 -5.78493 -3.06874 2.44260 2.54471 2.73440 3.22769 3.42728 3.48776 3.50818 3.51461 3.63323 4.01477 4.08518 4.41610 4.45772 4.58283 4.77799 4.95984 5.04202 5.06717 5.12530 5.20462 5.23716 5.36995 5.45688 5.56731 5.60196 5.80262 5.95346 5.97149 6.09299 6.22885 6.37747 6.45857 6.63769 6.75679 6.85333 7.42455 7.70013 8.13843 8.40768 9.52132 10.09257 10.44008 11.44625 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.002290 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.564294 B =12224.021524 C =12282.900967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.127 3.873 15 N -0.725 5.725 16 C 0.504 3.496 17 O -0.525 6.525 18 C -0.105 4.105 19 C -0.189 4.189 20 C 0.488 3.512 21 F -0.165 7.165 22 F -0.182 7.182 23 F -0.184 7.184 24 C -0.119 4.119 25 C -0.150 4.150 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 0.137 -27.355 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.377 5.377 16 C 0.289 3.711 17 O -0.401 6.401 18 C -0.145 4.145 19 C -0.190 4.190 20 C 0.434 3.566 21 F -0.146 7.146 22 F -0.164 7.164 23 F -0.166 7.166 24 C -0.156 4.156 25 C -0.187 4.187 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.308 -0.770 -27.295 27.337 hybrid contribution -0.510 0.214 1.060 1.195 sum 0.798 -0.556 -26.235 26.253 Atomic orbital electron populations 1.21793 0.94658 1.01973 1.01469 1.21554 0.96723 1.00456 0.94222 0.90561 1.20574 0.96586 0.94225 0.85382 1.42350 1.66934 1.27674 1.00611 1.19285 1.28525 1.05428 0.83645 0.91097 1.24738 1.01050 0.97411 0.97881 1.69663 1.43681 1.16623 1.28388 0.86109 0.77602 0.77845 0.84608 1.20530 1.21878 1.21861 1.21410 1.00087 0.95293 0.82826 1.46049 1.57771 1.27934 1.05915 1.20417 0.80127 0.86043 0.84524 1.90752 1.39133 1.23735 1.86486 1.21187 1.04634 0.99024 0.89677 1.22032 0.96386 1.00231 1.00397 1.19361 0.79950 0.82960 0.74305 1.93276 1.94193 1.53422 1.73733 1.93160 1.38977 1.89375 1.94860 1.93145 1.95072 1.93488 1.34864 1.22993 0.90088 1.01254 1.01301 1.23363 1.00794 0.99149 0.95348 0.92815 0.91155 0.93912 0.95996 0.96153 0.78219 0.93575 0.91334 0.91355 0.76538 0.86880 0.87526 0.87575 0.86893 0.86884 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.20 5.33 -59.91 -0.32 -18.52 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.13 1.70 5.06 -4.05 -0.02 1.67 16 15 N -0.72 -7.77 5.28 -60.30 -0.32 -8.09 16 16 C 0.50 5.68 7.74 -10.98 -0.09 5.59 16 17 O -0.53 -7.81 14.04 5.56 0.08 -7.73 16 18 C -0.11 -0.79 5.56 -27.88 -0.16 -0.95 16 19 C -0.19 -1.57 1.35 -154.50 -0.21 -1.78 16 20 C 0.49 5.12 3.14 37.16 0.12 5.24 16 21 F -0.17 -2.19 16.09 2.25 0.04 -2.16 16 22 F -0.18 -1.93 16.29 2.25 0.04 -1.90 16 23 F -0.18 -1.84 15.91 2.25 0.04 -1.80 16 24 C -0.12 -0.91 8.80 -26.73 -0.24 -1.15 16 25 C -0.15 -0.84 9.57 -26.73 -0.26 -1.09 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 28 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 9.91 6.85 -40.82 -0.28 9.64 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.34 7.66 -40.82 -0.31 3.03 16 36 H 0.11 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.11 0.69 7.27 -51.93 -0.38 0.31 16 38 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.11 0.58 7.29 -51.93 -0.38 0.20 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -32.90 351.38 -6.31 -39.21 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.85 Total: 5.88 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.00 Total: -0.25 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.09 Total: -53.94 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.90 -6.31 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.258 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds