Wall clock time and date at job start Tue Mar 31 2020 09:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.53000 * 109.46745 * 119.99248 * 2 1 3 5 5 N 1.46500 * 109.47366 * 295.00548 * 4 2 1 6 6 C 1.36944 * 120.00066 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.38804 * 119.99849 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00384 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99745 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46918 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46915 * 120.00029 * 10 8 6 13 13 H 1.48497 * 109.46956 * 239.99682 * 10 8 6 14 14 C 1.52997 * 109.47509 * 239.99499 * 2 1 3 15 15 N 1.46493 * 109.47044 * 64.99926 * 14 2 1 16 16 C 1.34783 * 120.00224 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99666 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.46690 * 186.04476 * 18 16 15 20 20 C 1.53001 * 115.56384 * 80.52186 * 19 18 16 21 21 F 1.39900 * 109.46769 * 279.96972 * 20 19 18 22 22 F 1.39901 * 109.47071 * 39.97034 * 20 19 18 23 23 F 1.39894 * 109.47279 * 159.97326 * 20 19 18 24 24 C 1.52999 * 117.49701 * 294.82614 * 19 18 16 25 25 C 1.52997 * 60.00270 * 252.51185 * 24 19 18 26 26 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47630 * 300.00537 * 1 2 3 28 28 H 1.09001 * 109.46921 * 60.01217 * 1 2 3 29 29 H 1.09003 * 109.47423 * 55.00781 * 4 2 1 30 30 H 1.09004 * 109.46868 * 175.00167 * 4 2 1 31 31 H 0.96995 * 119.99898 * 359.97438 * 5 4 2 32 32 H 0.96995 * 120.00189 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47153 * 304.99653 * 14 2 1 34 34 H 1.08998 * 109.46978 * 184.99738 * 14 2 1 35 35 H 0.97009 * 120.00335 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.47469 * 66.04620 * 18 16 15 37 37 H 1.08999 * 109.47288 * 306.04362 * 18 16 15 38 38 H 1.09010 * 117.49478 * 145.02267 * 24 19 18 39 39 H 1.08999 * 117.50381 * 0.02562 * 24 19 18 40 40 H 1.08997 * 117.49911 * 107.48857 * 25 24 19 41 41 H 1.08997 * 117.50136 * 252.51129 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6522 0.0356 2.4424 6 6 2.0017 -0.4200 3.6857 7 1 2.5634 -1.3368 3.7866 8 6 1.6348 0.2973 4.8160 9 7 0.9515 1.4154 4.6929 10 14 2.1109 -0.3245 6.5120 11 1 2.8709 -1.5933 6.3787 12 1 2.9567 0.6895 7.1916 13 1 0.8841 -0.5636 7.3140 14 6 2.0401 -0.7213 -1.2491 15 7 1.6526 0.0351 -2.4423 16 6 1.9967 -0.4134 -3.6658 17 8 2.6267 -1.4434 -3.7790 18 6 1.5985 0.3652 -4.8932 19 6 1.9757 -0.4290 -6.1454 20 6 1.0010 -1.5401 -6.5410 21 9 1.2346 -2.6692 -5.7486 22 9 -0.3125 -1.0987 -6.3482 23 9 1.1898 -1.8683 -7.8877 24 6 3.4638 -0.6676 -6.4089 25 6 2.6833 0.3246 -7.2733 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6054 -1.7197 1.2954 30 1 3.1263 -0.7993 1.2058 31 1 1.1487 0.8596 2.3517 32 1 0.6948 1.9164 5.4828 33 1 1.6056 -1.7199 -1.2949 34 1 3.1264 -0.7994 -1.2054 35 1 1.1489 0.8593 -2.3518 36 1 2.1183 1.3232 -4.9003 37 1 0.5220 0.5359 -4.8817 38 1 3.7484 -1.6164 -6.8641 39 1 4.1741 -0.2593 -5.6901 40 1 2.8801 1.3861 -7.1233 41 1 2.4546 0.0288 -8.2971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:23 Heat of formation + Delta-G solvation = -186.001660 kcal Electronic energy + Delta-G solvation = -25664.097600 eV Core-core repulsion = 21356.911159 eV Total energy + Delta-G solvation = -4307.186441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.09437 -48.66124 -48.54248 -40.96031 -38.78198 -37.89997 -35.90657 -34.10654 -32.07045 -30.66006 -27.92004 -27.56893 -26.68384 -24.34011 -23.52171 -22.09428 -21.52952 -20.94284 -19.43665 -19.31577 -19.20389 -18.48672 -17.80916 -17.13715 -16.59744 -16.43700 -15.88336 -15.69589 -15.50735 -15.45246 -15.18638 -15.05330 -15.02369 -14.77755 -14.73365 -14.58686 -14.42007 -14.12766 -13.70330 -13.57492 -13.07755 -12.94921 -12.82185 -12.60220 -12.41519 -12.16940 -12.12985 -11.98552 -11.74450 -11.68615 -11.65242 -11.40647 -10.96062 -10.74365 -10.03037 -8.99921 -7.96326 -5.24500 1.47606 1.47788 1.58131 1.68481 1.73817 2.04250 2.48430 2.57458 2.80774 2.94500 3.37577 3.41041 3.46019 3.72500 3.75217 3.81705 3.97100 4.07205 4.15506 4.35626 4.50301 4.53117 4.56531 4.70250 4.71746 4.73183 4.81723 4.94306 4.96071 5.05208 5.12898 5.13006 5.34988 5.43402 5.49687 5.51614 6.26883 6.60232 7.30775 7.33661 8.08655 8.33124 9.27350 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.002290 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.564294 B =12224.021524 C =12282.900967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.141 3.859 15 N -0.717 5.717 16 C 0.499 3.501 17 O -0.566 6.566 18 C -0.097 4.097 19 C -0.205 4.205 20 C 0.480 3.520 21 F -0.188 7.188 22 F -0.184 7.184 23 F -0.184 7.184 24 C -0.133 4.133 25 C -0.118 4.118 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.415 0.585 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 1.219 -28.704 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.100 0.900 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.016 3.984 15 N -0.370 5.370 16 C 0.286 3.714 17 O -0.444 6.444 18 C -0.136 4.136 19 C -0.207 4.207 20 C 0.426 3.574 21 F -0.169 7.169 22 F -0.166 7.166 23 F -0.166 7.166 24 C -0.170 4.170 25 C -0.154 4.154 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.252 0.748 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.161 0.839 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.491 0.310 -28.677 28.717 hybrid contribution -0.562 -0.191 1.397 1.518 sum 0.929 0.119 -27.280 27.296 Atomic orbital electron populations 1.21728 0.94039 1.01728 1.01806 1.21331 0.97014 1.00152 0.92759 0.90029 1.20728 0.96505 0.94050 0.85794 1.42517 1.66797 1.27815 1.01343 1.19653 1.27738 1.05265 0.85090 0.90948 1.25534 1.01718 0.97906 1.01481 1.69802 1.45131 1.17844 1.29068 0.85093 0.77112 0.77615 0.80059 1.19298 1.21878 1.21960 1.21055 0.99412 0.94806 0.83148 1.45913 1.57779 1.28191 1.05088 1.21142 0.79115 0.85711 0.85386 1.90743 1.40967 1.25654 1.87054 1.21259 1.05934 0.99497 0.86947 1.22143 0.95959 1.00434 1.02178 1.19795 0.80459 0.83033 0.74075 1.93228 1.94352 1.54935 1.74421 1.93146 1.39311 1.89262 1.94874 1.93137 1.95076 1.93572 1.34785 1.22998 0.89796 1.01832 1.02335 1.23522 0.97259 1.00114 0.94542 0.93359 0.93929 0.90371 0.96423 0.96247 0.79034 0.93926 0.92517 0.92122 0.74828 0.83266 0.86046 0.88709 0.86941 0.83928 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.94 71.98 0.64 -3.15 16 2 C -0.09 -2.72 2.46 -10.79 -0.03 -2.74 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.16 6.15 5.65 86.38 0.49 6.64 16 5 N -0.74 -37.22 5.33 -343.45 -1.83 -39.05 16 6 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 9 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 10 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.14 3.60 5.06 86.38 0.44 4.03 16 15 N -0.72 -13.83 5.28 -463.09 -2.45 -16.28 16 16 C 0.50 10.34 7.74 87.66 0.68 11.02 16 17 O -0.57 -16.54 14.04 -3.02 -0.04 -16.58 16 18 C -0.10 -1.15 5.56 29.85 0.17 -0.99 16 19 C -0.21 -2.98 1.35 -52.18 -0.07 -3.05 16 20 C 0.48 9.63 3.14 71.98 0.23 9.85 16 21 F -0.19 -5.05 16.09 44.97 0.72 -4.33 16 22 F -0.18 -3.67 16.29 44.97 0.73 -2.94 16 23 F -0.18 -3.53 15.91 44.97 0.72 -2.81 16 24 C -0.13 -1.83 8.80 30.59 0.27 -1.56 16 25 C -0.12 -0.93 9.57 30.59 0.29 -0.64 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 28 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.38 19.74 6.85 -92.71 -0.64 19.11 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.41 5.59 7.66 -92.70 -0.71 4.88 16 36 H 0.15 0.71 7.94 -2.39 -0.02 0.69 16 37 H 0.12 1.13 7.27 -2.39 -0.02 1.11 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.14 0.32 8.08 -2.39 -0.02 0.30 16 41 H 0.12 0.85 7.29 -2.39 -0.02 0.84 16 Total: -1.00 -72.12 351.38 4.29 -67.82 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.28 Total: 21.61 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 4.41 Total: 2.70 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.99 Total: -113.67 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.04 Total: -16.58 kcal Atomic # 9 Polarization: -12.25 SS G_CDS: 2.17 Total: -10.08 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.12 4.29 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.178 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds