Wall clock time and date at job start Tue Mar 31 2020 09:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47711 * 2 1 4 4 C 1.53003 * 109.47452 * 239.99528 * 2 1 3 5 5 C 1.50697 * 109.46624 * 65.00008 * 4 2 1 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 2 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 9 9 H 1.09002 * 109.47048 * 324.99733 * 8 7 5 10 10 C 1.53004 * 109.46824 * 204.99873 * 8 7 5 11 11 N 1.46507 * 109.46980 * 55.00128 * 10 8 7 12 12 C 1.36938 * 119.99671 * 179.97438 * 11 10 8 13 13 H 1.07990 * 120.00485 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99772 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99709 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00078 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47239 * 60.00081 * 16 14 12 18 18 H 1.48504 * 109.47221 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47215 * 300.00358 * 16 14 12 20 20 C 1.52995 * 109.47258 * 85.00288 * 8 7 5 21 21 C 1.53000 * 117.49876 * 8.74236 * 20 8 7 22 22 C 1.52998 * 117.49634 * 300.08356 * 20 8 7 23 23 C 1.53004 * 109.46933 * 119.99809 * 2 1 3 24 24 F 1.39903 * 109.47209 * 179.97438 * 23 2 1 25 25 F 1.39904 * 109.46890 * 299.99716 * 23 2 1 26 26 F 1.39898 * 109.47102 * 59.99826 * 23 2 1 27 27 H 1.08997 * 109.47158 * 300.00922 * 1 2 3 28 28 H 1.09003 * 109.46558 * 60.00222 * 1 2 3 29 29 H 1.08994 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46782 * 305.00904 * 4 2 1 31 31 H 1.08993 * 109.47555 * 185.00461 * 4 2 1 32 32 H 0.97005 * 119.99846 * 359.72750 * 7 5 4 33 33 H 1.08996 * 109.47116 * 174.99417 * 10 8 7 34 34 H 1.08992 * 109.47265 * 295.00085 * 10 8 7 35 35 H 0.96995 * 119.99766 * 359.97438 * 11 10 8 36 36 H 0.97000 * 119.99566 * 179.97438 * 15 14 12 37 37 H 1.09002 * 115.54979 * 154.41679 * 20 8 7 38 38 H 1.08995 * 117.50228 * 0.02562 * 21 20 8 39 39 H 1.08997 * 117.49799 * 145.02647 * 21 20 8 40 40 H 1.09004 * 117.50291 * 214.97962 * 22 20 8 41 41 H 1.09006 * 117.50017 * 0.02562 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0071 1.0845 -2.3636 7 7 1.9845 -0.3921 -3.7001 8 6 1.5919 0.3613 -4.8936 9 1 0.6142 0.8151 -4.7314 10 6 1.5222 -0.5848 -6.0940 11 7 0.6236 -1.7000 -5.7852 12 6 0.4031 -2.6796 -6.7163 13 1 0.8919 -2.6304 -7.6780 14 6 -0.4479 -3.7365 -6.4236 15 7 -1.0432 -3.7968 -5.2513 16 14 -0.7481 -5.0732 -7.6934 17 1 0.5388 -5.7321 -8.0323 18 1 -1.6894 -6.0796 -7.1397 19 1 -1.3330 -4.4702 -8.9180 20 6 2.6238 1.4572 -5.1673 21 6 3.9091 1.4405 -4.3375 22 6 2.8437 2.5085 -4.0777 23 6 2.0399 -0.7212 1.2493 24 9 3.4390 -0.7218 1.2491 25 9 1.5736 -0.0616 2.3916 26 9 1.5735 -2.0402 1.2494 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.6053 -1.7199 -1.2951 31 1 3.1263 -0.7996 -1.2055 32 1 2.4916 -1.2142 -3.7905 33 1 1.1448 -0.0438 -6.9616 34 1 2.5183 -0.9703 -6.3111 35 1 0.1849 -1.7444 -4.9213 36 1 -1.6382 -4.5351 -5.0469 37 1 2.6986 1.7841 -6.2045 38 1 4.0197 0.6485 -3.5968 39 1 4.8293 1.7567 -4.8285 40 1 3.0636 3.5270 -4.3979 41 1 2.2535 2.4191 -3.1656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754450467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:47 Heat of formation + Delta-G solvation = -163.364540 kcal Electronic energy + Delta-G solvation = -26606.131823 eV Core-core repulsion = 22299.927001 eV Total energy + Delta-G solvation = -4306.204822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.20875 -47.70444 -47.65330 -40.22346 -37.54098 -35.01531 -34.88666 -33.36369 -31.28106 -28.92239 -27.35884 -26.30762 -24.09545 -22.29125 -22.01970 -21.51331 -20.39950 -19.71480 -18.68327 -18.44275 -17.66516 -17.31424 -16.34763 -16.20135 -15.80326 -15.13640 -14.80013 -14.60007 -14.44332 -14.11472 -14.11324 -13.84223 -13.81237 -13.63453 -13.42283 -13.22691 -13.08801 -12.92972 -12.42127 -12.02232 -11.74457 -11.55222 -11.44141 -11.34241 -11.29956 -11.17906 -10.93435 -10.83703 -10.28847 -10.14985 -9.84301 -9.66501 -9.58298 -8.95898 -8.71152 -7.01472 -5.82968 -3.12842 2.59463 2.74597 3.27689 3.40250 3.45127 3.45936 3.73413 3.92890 3.96340 4.04455 4.51858 4.56609 4.73720 4.85572 4.93975 5.12281 5.15466 5.16813 5.36724 5.49151 5.49651 5.53423 5.70040 5.73772 5.79853 5.85998 5.96200 5.97330 6.17732 6.24106 6.28026 6.43558 6.47120 6.64316 6.86531 7.63503 7.72919 8.34917 8.39257 9.47033 10.01842 10.37366 11.39315 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.004223 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.930702 B = 6628.357310 C = 8272.149551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.148 4.148 5 C 0.523 3.477 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.169 3.831 9 H 0.092 0.908 10 C 0.147 3.853 11 N -0.731 5.731 12 C -0.244 4.244 13 H 0.070 0.930 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.160 4.160 21 C -0.178 4.178 22 C -0.187 4.187 23 C 0.452 3.548 24 F -0.186 7.186 25 F -0.184 7.184 26 F -0.180 7.180 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.406 0.594 33 H 0.034 0.966 34 H 0.026 0.974 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 9.410 10.747 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 H 0.138 0.862 4 C -0.188 4.188 5 C 0.310 3.690 6 O -0.419 6.419 7 N -0.355 5.355 8 C 0.064 3.936 9 H 0.110 0.890 10 C 0.019 3.981 11 N -0.376 5.376 12 C -0.375 4.375 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.580 5.580 16 Si 0.739 3.261 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.224 4.224 23 C 0.398 3.602 24 F -0.168 7.168 25 F -0.165 7.165 26 F -0.162 7.162 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.242 0.758 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.658 10.005 10.691 17.010 hybrid contribution 0.105 -1.391 -0.310 1.429 sum 8.763 8.613 10.380 16.085 Atomic orbital electron populations 1.22020 0.90723 1.03817 1.05127 1.22133 1.00505 1.01298 0.89379 0.86192 1.21730 1.03639 1.01442 0.91941 1.20083 0.79129 0.85308 0.84504 1.90597 1.39974 1.24766 1.86556 1.45968 1.56627 1.27666 1.05256 1.20762 0.97152 0.90870 0.84817 0.89017 1.20915 0.94597 0.89098 0.93457 1.42326 1.53525 1.23864 1.17905 1.19161 1.22371 1.00296 0.95715 0.91189 1.24738 0.99823 0.99020 0.97071 1.69648 1.33944 1.33119 1.21244 0.86265 0.77591 0.81622 0.80657 1.21248 1.21678 1.21245 1.22700 0.98302 0.99957 0.97057 1.22883 0.92763 1.02246 1.03602 1.23338 1.02914 0.94084 1.02017 1.20709 0.75262 0.77906 0.86338 1.93171 1.30311 1.96460 1.96825 1.93169 1.88481 1.80789 1.54065 1.93190 1.88386 1.37792 1.96803 0.91689 0.88056 0.91508 0.87029 0.87952 0.75826 0.94832 0.95595 0.78031 0.93394 0.87304 0.89080 0.89531 0.89793 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.69 37.16 0.32 -1.53 16 2 C -0.11 -1.22 2.01 -90.62 -0.18 -1.40 16 3 H 0.12 1.23 7.96 -51.93 -0.41 0.82 16 4 C -0.15 -1.63 4.93 -27.88 -0.14 -1.76 16 5 C 0.52 7.17 6.39 -10.98 -0.07 7.10 16 6 O -0.54 -8.47 10.99 5.56 0.06 -8.41 16 7 N -0.71 -9.99 3.05 -53.81 -0.16 -10.15 16 8 C 0.17 2.63 2.59 -67.93 -0.18 2.45 16 9 H 0.09 1.64 7.58 -51.93 -0.39 1.24 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.70 16 11 N -0.73 -17.32 5.43 -59.91 -0.33 -17.65 16 12 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 13 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 16 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.16 -2.13 5.70 -90.62 -0.52 -2.64 16 21 C -0.18 -2.11 9.74 -26.69 -0.26 -2.37 16 22 C -0.19 -2.38 9.82 -26.69 -0.26 -2.65 16 23 C 0.45 4.98 2.69 37.16 0.10 5.08 16 24 F -0.19 -2.06 16.71 2.25 0.04 -2.03 16 25 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 26 F -0.18 -2.18 16.37 2.25 0.04 -2.15 16 27 H 0.06 0.67 7.80 -51.93 -0.41 0.27 16 28 H 0.10 1.37 5.94 -51.93 -0.31 1.06 16 29 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 30 H 0.11 1.26 7.94 -51.93 -0.41 0.85 16 31 H 0.10 0.93 7.66 -51.93 -0.40 0.53 16 32 H 0.41 5.56 8.60 -40.82 -0.35 5.21 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.39 9.69 7.33 -40.82 -0.30 9.39 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 38 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.12 1.69 5.01 -51.93 -0.26 1.43 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -29.44 344.28 -6.53 -35.97 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.65 Total: 13.12 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.45 Total: -2.09 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.23 Total: -54.33 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.06 Total: -8.41 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.44 -6.53 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754450467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.392 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds