Wall clock time and date at job start Tue Mar 31 2020 09:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46453 * 2 1 4 4 C 1.52999 * 109.47294 * 239.99659 * 2 1 3 5 5 C 1.50698 * 109.47004 * 64.99627 * 4 2 1 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 11 11 N 1.46510 * 109.46482 * 304.99988 * 10 8 7 12 12 C 1.36939 * 119.99628 * 179.97438 * 11 10 8 13 13 H 1.07993 * 120.00228 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99496 * 179.97438 * 12 11 10 15 15 N 1.31624 * 119.99565 * 180.02562 * 14 12 11 16 16 Si 1.86789 * 120.00243 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47744 * 89.99623 * 16 14 12 18 18 H 1.48510 * 109.47039 * 209.99876 * 16 14 12 19 19 H 1.48497 * 109.47226 * 329.99454 * 16 14 12 20 20 C 1.52999 * 109.47136 * 275.27771 * 8 7 5 21 21 C 1.53009 * 117.50162 * 128.74799 * 20 8 7 22 22 C 1.53004 * 117.50286 * 60.08977 * 20 8 7 23 23 C 1.52996 * 109.46980 * 119.99152 * 2 1 3 24 24 F 1.39901 * 109.47234 * 180.02562 * 23 2 1 25 25 F 1.39898 * 109.47655 * 300.00671 * 23 2 1 26 26 F 1.39909 * 109.46988 * 60.00308 * 23 2 1 27 27 H 1.09002 * 109.47039 * 60.00967 * 1 2 3 28 28 H 1.09008 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47528 * 300.00016 * 1 2 3 30 30 H 1.09003 * 109.46690 * 304.99977 * 4 2 1 31 31 H 1.08993 * 109.46773 * 185.00313 * 4 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47318 * 64.99083 * 10 8 7 34 34 H 1.08988 * 109.47710 * 185.00333 * 10 8 7 35 35 H 0.97003 * 120.00089 * 359.97438 * 11 10 8 36 36 H 0.97000 * 120.00018 * 180.02562 * 15 14 12 37 37 H 1.08997 * 115.55354 * 274.41685 * 20 8 7 38 38 H 1.08999 * 117.49124 * 0.02562 * 21 20 8 39 39 H 1.09001 * 117.50171 * 145.01715 * 21 20 8 40 40 H 1.08993 * 117.50276 * 214.98380 * 22 20 8 41 41 H 1.09005 * 117.49316 * 359.97364 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0117 1.0872 -2.3634 7 7 1.9854 -0.3917 -3.7000 8 6 1.5926 0.3616 -4.8935 9 1 1.6238 1.4292 -4.6759 10 6 2.5589 0.0458 -6.0370 11 7 3.9326 0.3130 -5.6033 12 6 4.9759 0.1013 -6.4646 13 1 4.7861 -0.2622 -7.4636 14 6 6.2774 0.3550 -6.0538 15 7 7.2801 0.1520 -6.8819 16 14 6.6055 0.9845 -4.3261 17 1 6.8045 -0.1666 -3.4092 18 1 7.8262 1.8303 -4.3309 19 1 5.4469 1.7904 -3.8645 20 6 0.1724 -0.0343 -5.3020 21 6 -0.8371 1.0925 -5.5307 22 6 -0.9476 0.2061 -4.2877 23 6 2.0400 -0.7210 1.2493 24 9 3.4390 -0.7206 1.2497 25 9 1.5736 -0.0616 2.3916 26 9 1.5737 -2.0401 1.2494 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6054 -1.7199 -1.2950 31 1 3.1263 -0.7995 -1.2054 32 1 2.4894 -1.2156 -3.7906 33 1 2.4632 -1.0040 -6.3141 34 1 2.3212 0.6718 -6.8969 35 1 4.1030 0.6399 -4.7060 36 1 8.1896 0.3289 -6.5948 37 1 0.0946 -0.9162 -5.9378 38 1 -0.4892 2.1159 -5.3905 39 1 -1.5791 0.9517 -6.3167 40 1 -1.7621 -0.5175 -4.2563 41 1 -0.6724 0.6459 -3.3290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754450468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:51 Heat of formation + Delta-G solvation = -163.542718 kcal Electronic energy + Delta-G solvation = -26597.764149 eV Core-core repulsion = 22291.551601 eV Total energy + Delta-G solvation = -4306.212548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.31375 -47.79147 -47.77490 -40.23953 -37.66013 -35.33700 -35.06398 -33.60771 -31.45043 -29.26305 -27.60696 -26.45333 -24.00615 -22.31129 -22.04528 -21.36746 -20.53657 -20.20627 -18.81605 -18.54265 -17.88956 -17.71294 -16.42159 -16.21931 -15.99261 -15.03437 -14.99650 -14.75223 -14.53737 -14.22641 -14.21226 -14.08061 -13.94502 -13.90037 -13.42470 -13.38428 -13.34038 -12.83121 -12.52917 -12.32591 -11.98231 -11.69170 -11.61032 -11.51991 -11.31912 -11.27537 -11.10410 -10.93427 -10.28785 -10.22920 -10.06249 -9.72502 -9.66347 -9.00453 -8.87829 -7.33829 -5.84288 -3.21121 2.47998 2.57810 3.09453 3.30859 3.34791 3.40520 3.59924 3.77935 3.84339 4.03562 4.41788 4.51987 4.59273 4.67214 4.78935 4.96752 5.03718 5.14383 5.22610 5.27900 5.29084 5.43359 5.50953 5.55405 5.65158 5.69152 5.73850 5.82737 5.95652 6.01338 6.21780 6.31561 6.37292 6.50470 6.71795 7.57212 7.90447 8.23005 8.34207 9.12342 9.84368 10.03236 11.33816 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.004968 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.028895 B = 5635.182842 C = 7674.222377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.148 4.148 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.709 5.709 8 C 0.164 3.836 9 H 0.089 0.911 10 C 0.153 3.847 11 N -0.755 5.755 12 C -0.248 4.248 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.881 3.119 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.185 4.185 23 C 0.452 3.548 24 F -0.183 7.183 25 F -0.183 7.183 26 F -0.183 7.183 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.406 0.594 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 -2.919 13.817 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.188 4.188 5 C 0.308 3.692 6 O -0.419 6.419 7 N -0.358 5.358 8 C 0.060 3.940 9 H 0.107 0.893 10 C 0.025 3.975 11 N -0.401 5.401 12 C -0.378 4.378 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.579 5.579 16 Si 0.711 3.289 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.183 4.183 21 C -0.208 4.208 22 C -0.222 4.222 23 C 0.398 3.602 24 F -0.164 7.164 25 F -0.164 7.164 26 F -0.165 7.165 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.241 0.759 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.850 -2.265 13.692 21.830 hybrid contribution 0.858 -0.151 1.300 1.565 sum -15.992 -2.417 14.992 22.053 Atomic orbital electron populations 1.22005 0.90919 1.03321 1.05185 1.22158 1.00281 1.01772 0.89450 0.85889 1.21739 1.04336 1.00802 0.91956 1.20107 0.79120 0.85454 0.84476 1.90599 1.40318 1.24473 1.86533 1.46026 1.56356 1.28135 1.05318 1.20893 0.91582 0.96766 0.84753 0.89278 1.20900 0.83964 0.98927 0.93716 1.42694 1.01589 1.81319 1.14524 1.19036 0.84827 1.37720 0.96197 0.89089 1.24660 0.95472 1.01233 0.97439 1.69696 0.98651 1.54590 1.34930 0.86610 0.77528 0.78909 0.85859 1.20944 1.21583 1.20394 1.22625 0.90949 1.00924 1.03789 1.22904 1.01737 0.96112 1.00012 1.23274 0.99880 1.02986 0.96086 1.20671 0.75511 0.77693 0.86298 1.93202 1.30007 1.96402 1.96792 1.93172 1.88486 1.80758 1.54005 1.93168 1.88448 1.38009 1.96833 0.88239 0.91842 0.91526 0.87441 0.87456 0.75873 0.94793 0.93801 0.80485 0.92954 0.87679 0.88739 0.89095 0.89817 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.69 37.16 0.32 -1.09 16 2 C -0.12 -1.14 2.01 -90.62 -0.18 -1.33 16 3 H 0.12 1.27 7.95 -51.93 -0.41 0.85 16 4 C -0.15 -1.48 4.93 -27.88 -0.14 -1.62 16 5 C 0.52 6.62 6.87 -10.99 -0.08 6.54 16 6 O -0.54 -7.89 10.98 5.55 0.06 -7.83 16 7 N -0.71 -9.33 4.50 -53.81 -0.24 -9.57 16 8 C 0.16 2.40 2.43 -67.93 -0.17 2.23 16 9 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 10 C 0.15 2.69 5.80 -4.04 -0.02 2.66 16 11 N -0.75 -16.86 5.24 -59.91 -0.31 -17.18 16 12 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 16 Si 0.88 21.69 27.73 -169.99 -4.71 16.97 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 20 C -0.16 -2.01 5.36 -90.61 -0.49 -2.50 16 21 C -0.17 -1.97 10.18 -26.69 -0.27 -2.24 16 22 C -0.19 -2.16 9.73 -26.69 -0.26 -2.42 16 23 C 0.45 4.66 2.69 37.16 0.10 4.76 16 24 F -0.18 -2.11 16.71 2.25 0.04 -2.08 16 25 F -0.18 -1.97 16.80 2.25 0.04 -1.93 16 26 F -0.18 -1.89 16.37 2.25 0.04 -1.86 16 27 H 0.10 1.03 5.95 -51.93 -0.31 0.72 16 28 H 0.06 0.51 7.80 -51.92 -0.41 0.11 16 29 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 30 H 0.11 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.11 1.06 7.66 -51.93 -0.40 0.67 16 32 H 0.41 4.98 8.60 -40.82 -0.35 4.63 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.80 8.14 -51.94 -0.42 0.38 16 35 H 0.36 8.04 5.20 -40.82 -0.21 7.83 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 37 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 38 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.12 1.53 5.01 -51.93 -0.26 1.27 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -30.90 344.07 -6.24 -37.14 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.67 Total: 10.83 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.43 Total: -1.77 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.22 Total: -54.66 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.06 Total: -7.83 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.90 -6.24 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754450468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.408 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds