Wall clock time and date at job start Tue Mar 31 2020 09:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46781 * 2 1 4 4 C 1.52996 * 109.47022 * 119.99601 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99939 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09007 * 109.47463 * 325.00619 * 8 7 5 10 10 C 1.52995 * 109.47455 * 205.00257 * 8 7 5 11 11 N 1.46495 * 109.47115 * 55.00282 * 10 8 7 12 12 C 1.36941 * 120.00227 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99644 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00108 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00100 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47152 * 89.99739 * 16 14 12 18 18 H 1.48493 * 109.47473 * 209.99550 * 16 14 12 19 19 H 1.48504 * 109.47029 * 329.99903 * 16 14 12 20 20 C 1.53000 * 109.47070 * 85.00207 * 8 7 5 21 21 C 1.53003 * 117.49778 * 8.74897 * 20 8 7 22 22 C 1.53003 * 117.49721 * 300.08888 * 20 8 7 23 23 C 1.52997 * 109.47335 * 239.99693 * 2 1 3 24 24 F 1.39898 * 109.46911 * 300.00289 * 23 2 1 25 25 F 1.39901 * 109.46903 * 59.99568 * 23 2 1 26 26 F 1.39897 * 109.47309 * 179.97438 * 23 2 1 27 27 H 1.09005 * 109.47435 * 300.00109 * 1 2 3 28 28 H 1.09001 * 109.47522 * 60.00580 * 1 2 3 29 29 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47066 * 175.00142 * 4 2 1 31 31 H 1.08994 * 109.47405 * 54.99972 * 4 2 1 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.08999 * 109.47321 * 175.00268 * 10 8 7 34 34 H 1.09000 * 109.47575 * 295.00084 * 10 8 7 35 35 H 0.97004 * 120.00478 * 359.97438 * 11 10 8 36 36 H 0.96994 * 120.00014 * 180.02562 * 15 14 12 37 37 H 1.08997 * 115.55344 * 154.42052 * 20 8 7 38 38 H 1.09006 * 117.49635 * 359.97438 * 21 20 8 39 39 H 1.08997 * 117.49768 * 145.02028 * 21 20 8 40 40 H 1.08999 * 117.49745 * 214.97098 * 22 20 8 41 41 H 1.08994 * 117.50266 * 0.02562 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0872 2.3633 7 7 1.9800 -0.3943 3.7004 8 6 1.5873 0.3592 4.8938 9 1 1.6188 1.4269 4.6762 10 6 2.5532 0.0431 6.0374 11 7 3.9270 0.3099 5.6041 12 6 4.9701 0.0978 6.4657 13 1 4.7799 -0.2657 7.4647 14 6 6.2717 0.3511 6.0553 15 7 6.5034 0.7946 4.8378 16 14 7.6945 0.0625 7.2307 17 1 8.1833 -1.3320 7.0834 18 1 8.7954 1.0085 6.9172 19 1 7.2360 0.2815 8.6261 20 6 0.1668 -0.0362 5.3021 21 6 -0.4719 -1.2231 4.5779 22 6 -0.9521 0.2008 4.2858 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -2.0402 -1.2491 25 9 1.5736 -0.0619 -2.3915 26 9 3.4390 -0.7208 -1.2494 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7994 1.2056 31 1 1.6054 -1.7196 1.2953 32 1 2.4840 -1.2181 3.7912 33 1 2.3154 0.6692 6.8974 34 1 2.4570 -1.0066 6.3147 35 1 4.0979 0.6360 4.7067 36 1 7.4130 0.9712 4.5510 37 1 -0.0742 0.0988 6.3565 38 1 0.1199 -1.7219 3.8102 39 1 -1.1332 -1.8686 5.1557 40 1 -1.9293 0.4912 4.6717 41 1 -0.6763 0.6380 3.3262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754450469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:55 Heat of formation + Delta-G solvation = -163.494043 kcal Electronic energy + Delta-G solvation = -26616.639009 eV Core-core repulsion = 22310.428572 eV Total energy + Delta-G solvation = -4306.210438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.20219 -47.68430 -47.65787 -40.23781 -37.53209 -35.05850 -34.88483 -33.36921 -31.27917 -28.92190 -27.40936 -26.33000 -24.09941 -22.29820 -22.02587 -21.50302 -20.43896 -19.71459 -18.68938 -18.41941 -17.68788 -17.31588 -16.32922 -16.12160 -15.85711 -15.29883 -14.70270 -14.59591 -14.43207 -14.10330 -13.98161 -13.89275 -13.82429 -13.75957 -13.38856 -13.25850 -13.17850 -12.92049 -12.37191 -12.13338 -11.67775 -11.54789 -11.53180 -11.38801 -11.34683 -11.18093 -10.92668 -10.85583 -10.28409 -10.13819 -9.84971 -9.65232 -9.57297 -8.96171 -8.72851 -7.01283 -5.82845 -3.12863 2.60689 2.73567 3.27643 3.39782 3.45360 3.47102 3.73086 3.92658 3.96440 4.04039 4.51896 4.54681 4.73423 4.85145 4.93362 5.09134 5.14858 5.15131 5.33731 5.45072 5.49716 5.52077 5.63976 5.72004 5.76610 5.79633 5.95383 5.96227 6.10361 6.17343 6.26699 6.42832 6.47011 6.64050 6.86177 7.64045 7.72765 8.34936 8.38954 9.47097 10.01959 10.37262 11.39486 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.004223 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.957763 B = 6628.764664 C = 8412.211740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 H 0.124 0.876 4 C -0.147 4.147 5 C 0.523 3.477 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.168 3.832 9 H 0.092 0.908 10 C 0.147 3.853 11 N -0.732 5.732 12 C -0.244 4.244 13 H 0.071 0.929 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C 0.452 3.548 24 F -0.184 7.184 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.407 0.593 33 H 0.034 0.966 34 H 0.026 0.974 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 -4.838 -9.445 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 H 0.142 0.858 4 C -0.187 4.187 5 C 0.310 3.690 6 O -0.419 6.419 7 N -0.355 5.355 8 C 0.064 3.936 9 H 0.110 0.890 10 C 0.019 3.981 11 N -0.377 5.377 12 C -0.375 4.375 13 H 0.089 0.911 14 C -0.207 4.207 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.224 4.224 23 C 0.398 3.602 24 F -0.166 7.166 25 F -0.165 7.165 26 F -0.163 7.163 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.242 0.758 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.678 -4.154 -9.386 17.911 hybrid contribution 1.369 -0.630 0.226 1.524 sum -13.309 -4.784 -9.160 16.850 Atomic orbital electron populations 1.22006 0.91089 1.03214 1.05135 1.22146 1.00087 1.01859 0.89473 0.85821 1.21721 1.04594 1.00463 0.91926 1.20081 0.79077 0.85401 0.84462 1.90599 1.40340 1.24453 1.86515 1.45963 1.56345 1.27952 1.05247 1.20764 0.91186 0.96899 0.84778 0.89019 1.20912 0.85339 0.98248 0.93558 1.42338 0.99574 1.80106 1.15634 1.19206 0.85906 1.37280 0.95093 0.91128 1.24743 0.97382 1.01853 0.96713 1.69658 1.19873 1.51232 1.17170 0.86189 0.82417 0.77440 0.80105 1.21693 1.21759 1.20744 1.22699 0.93811 1.03543 0.97947 1.22887 1.03659 0.91258 1.03662 1.23343 0.97850 0.98902 1.02285 1.20679 0.75580 0.77630 0.86283 1.93159 1.88473 1.38106 1.96838 1.93168 1.88511 1.80781 1.54064 1.93208 1.29893 1.96386 1.96779 0.88260 0.91596 0.91947 0.87145 0.87822 0.75825 0.94831 0.95595 0.78036 0.93435 0.87304 0.89059 0.89535 0.89793 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.69 37.16 0.32 -1.23 16 2 C -0.12 -1.24 2.01 -90.62 -0.18 -1.42 16 3 H 0.12 1.41 7.96 -51.93 -0.41 1.00 16 4 C -0.15 -1.62 4.93 -27.88 -0.14 -1.76 16 5 C 0.52 7.17 6.38 -10.98 -0.07 7.10 16 6 O -0.54 -8.49 10.99 5.55 0.06 -8.43 16 7 N -0.70 -9.99 3.05 -53.81 -0.16 -10.15 16 8 C 0.17 2.63 2.59 -67.93 -0.18 2.45 16 9 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 10 C 0.15 2.73 5.80 -4.05 -0.02 2.71 16 11 N -0.73 -17.41 5.43 -59.92 -0.33 -17.73 16 12 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 16 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 C -0.16 -2.10 5.71 -90.62 -0.52 -2.62 16 21 C -0.18 -2.06 9.74 -26.69 -0.26 -2.32 16 22 C -0.19 -2.33 9.83 -26.69 -0.26 -2.60 16 23 C 0.45 5.03 2.69 37.16 0.10 5.13 16 24 F -0.18 -2.04 16.37 2.25 0.04 -2.00 16 25 F -0.18 -2.11 16.80 2.25 0.04 -2.07 16 26 F -0.18 -2.27 16.71 2.25 0.04 -2.23 16 27 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 28 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 29 H 0.06 0.55 7.80 -51.93 -0.41 0.15 16 30 H 0.11 1.25 7.66 -51.93 -0.40 0.85 16 31 H 0.10 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.41 5.56 8.60 -40.82 -0.35 5.21 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.39 9.76 7.33 -40.82 -0.30 9.46 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.11 1.34 8.11 -51.93 -0.42 0.92 16 38 H 0.09 1.05 6.67 -51.93 -0.35 0.70 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.12 1.63 5.01 -51.93 -0.26 1.37 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -29.73 344.29 -6.53 -36.27 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.65 Total: 12.64 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.65 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.23 Total: -54.57 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.06 Total: -8.43 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.11 Total: -6.31 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.73 -6.53 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754450469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.229 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds