Wall clock time and date at job start Tue Mar 31 2020 09:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47310 * 119.99894 * 2 1 3 5 5 C 1.50703 * 109.47250 * 295.00080 * 4 2 1 6 6 O 1.21279 * 120.00024 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99935 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99771 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47391 * 34.99730 * 8 7 5 10 10 C 1.53000 * 109.46840 * 155.00060 * 8 7 5 11 11 N 1.46504 * 109.47054 * 304.99499 * 10 8 7 12 12 C 1.36938 * 119.99997 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99654 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99791 * 180.02562 * 12 11 10 15 15 N 1.31622 * 119.99636 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00370 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47330 * 89.99701 * 16 14 12 18 18 H 1.48503 * 109.47375 * 210.00124 * 16 14 12 19 19 H 1.48504 * 109.46903 * 330.00091 * 16 14 12 20 20 C 1.53002 * 109.46799 * 274.99826 * 8 7 5 21 21 C 1.53001 * 117.49775 * 128.75059 * 20 8 7 22 22 C 1.52997 * 117.49972 * 60.09056 * 20 8 7 23 23 C 1.52998 * 109.47118 * 240.00434 * 2 1 3 24 24 F 1.39898 * 109.47012 * 299.99483 * 23 2 1 25 25 F 1.39901 * 109.47294 * 59.99682 * 23 2 1 26 26 F 1.39902 * 109.47100 * 179.97438 * 23 2 1 27 27 H 1.08993 * 109.47155 * 59.99703 * 1 2 3 28 28 H 1.09004 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47075 * 299.99587 * 1 2 3 30 30 H 1.08999 * 109.47176 * 175.00081 * 4 2 1 31 31 H 1.08995 * 109.47240 * 55.00192 * 4 2 1 32 32 H 0.96998 * 119.99599 * 359.97438 * 7 5 4 33 33 H 1.08991 * 109.47625 * 64.99762 * 10 8 7 34 34 H 1.09002 * 109.46642 * 184.99913 * 10 8 7 35 35 H 0.97000 * 119.99700 * 0.02562 * 11 10 8 36 36 H 0.96997 * 119.99537 * 179.97438 * 15 14 12 37 37 H 1.09005 * 115.54775 * 274.41683 * 20 8 7 38 38 H 1.09002 * 117.49771 * 359.97438 * 21 20 8 39 39 H 1.09001 * 117.49702 * 145.01628 * 21 20 8 40 40 H 1.08999 * 117.49622 * 214.97459 * 22 20 8 41 41 H 1.08995 * 117.49984 * 359.97098 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0118 1.0874 2.3633 7 7 1.9855 -0.3913 3.7001 8 6 1.5974 0.3650 4.8933 9 1 0.6209 0.8217 4.7323 10 6 1.5270 -0.5793 6.0950 11 7 0.6243 -1.6920 5.7896 12 6 0.4024 -2.6696 6.7224 13 1 0.8933 -2.6206 7.6832 14 6 -0.4525 -3.7241 6.4327 15 7 -0.6654 -4.6641 7.3292 16 14 -1.3009 -3.8093 4.7708 17 1 -0.4484 -4.5645 3.8179 18 1 -2.6089 -4.4972 4.9173 19 1 -1.5201 -2.4337 4.2559 20 6 2.6334 1.4580 5.1635 21 6 2.1190 2.8849 5.3642 22 6 2.8517 2.5094 4.0737 23 6 2.0400 -0.7211 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5736 -0.0616 -2.3915 26 9 3.4390 -0.7206 -1.2496 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1264 -0.7994 1.2055 31 1 1.6055 -1.7197 1.2952 32 1 2.4894 -1.2152 3.7906 33 1 2.5222 -0.9677 6.3109 34 1 1.1530 -0.0357 6.9627 35 1 0.1837 -1.7362 4.9265 36 1 -1.2631 -5.4007 7.1269 37 1 3.5014 1.1493 5.7461 38 1 1.0425 3.0450 5.3033 39 1 2.6487 3.5150 6.0786 40 1 3.8632 2.8928 3.9396 41 1 2.2576 2.4223 3.1640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754450470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:00 Heat of formation + Delta-G solvation = -163.533585 kcal Electronic energy + Delta-G solvation = -26601.031145 eV Core-core repulsion = 22294.818993 eV Total energy + Delta-G solvation = -4306.212152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.31863 -47.80615 -47.77059 -40.22911 -37.66787 -35.31578 -35.06290 -33.60641 -31.45484 -29.26653 -27.57300 -26.44349 -24.00607 -22.34933 -21.98657 -21.37618 -20.52253 -20.20867 -18.80987 -18.55772 -17.87468 -17.71844 -16.44279 -16.32617 -15.74952 -15.21841 -14.98856 -14.72783 -14.53083 -14.22548 -14.22046 -13.96145 -13.95143 -13.87211 -13.63958 -13.34631 -13.19542 -12.82925 -12.58101 -12.23203 -12.01605 -11.66369 -11.60666 -11.49627 -11.29847 -11.26823 -11.10859 -10.93855 -10.29548 -10.23335 -10.05411 -9.73216 -9.67022 -9.00956 -8.86571 -7.34190 -5.84625 -3.21457 2.47664 2.58178 3.09421 3.30098 3.33666 3.39764 3.60191 3.77974 3.84330 4.03986 4.42649 4.51447 4.59694 4.67316 4.79225 4.99518 5.03946 5.14785 5.24060 5.28980 5.30766 5.43137 5.52818 5.58260 5.69047 5.69833 5.74860 5.83274 5.99175 6.07293 6.22184 6.32177 6.37176 6.50466 6.72023 7.57279 7.90151 8.23229 8.33877 9.12002 9.83976 10.02893 11.33501 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.011221 B = 0.004953 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.757933 B = 5651.533026 C = 7536.870142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 H 0.122 0.878 4 C -0.149 4.149 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.709 5.709 8 C 0.165 3.835 9 H 0.089 0.911 10 C 0.152 3.848 11 N -0.755 5.755 12 C -0.248 4.248 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.881 3.119 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.185 4.185 23 C 0.452 3.548 24 F -0.181 7.181 25 F -0.183 7.183 26 F -0.185 7.185 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.406 0.594 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 12.029 -15.204 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 H 0.140 0.860 4 C -0.189 4.189 5 C 0.308 3.692 6 O -0.419 6.419 7 N -0.358 5.358 8 C 0.060 3.940 9 H 0.107 0.893 10 C 0.025 3.975 11 N -0.401 5.401 12 C -0.378 4.378 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.579 5.579 16 Si 0.711 3.289 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.183 4.183 21 C -0.208 4.208 22 C -0.222 4.222 23 C 0.398 3.602 24 F -0.163 7.163 25 F -0.164 7.164 26 F -0.166 7.166 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.241 0.759 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.648 12.588 -15.071 21.073 hybrid contribution -0.219 -0.808 -1.238 1.494 sum 7.430 11.779 -16.309 21.446 Atomic orbital electron populations 1.22030 0.90866 1.03647 1.05248 1.22142 1.00388 1.01493 0.89399 0.85974 1.21745 1.03988 1.01165 0.91972 1.20107 0.79145 0.85408 0.84493 1.90597 1.40297 1.24485 1.86531 1.46028 1.56937 1.27553 1.05331 1.20893 0.97038 0.91260 0.84780 0.89278 1.20902 0.94576 0.88355 0.93688 1.42688 1.54429 1.26020 1.16974 1.19037 1.22962 0.99279 0.96492 0.89092 1.24660 0.99654 0.97082 0.97421 1.69696 1.40736 1.13442 1.33991 0.86607 0.79718 0.77387 0.85191 1.20955 1.21595 1.20372 1.22624 1.01435 0.90311 1.03923 1.22903 1.00756 0.96992 1.00104 1.23263 1.01413 1.02684 0.94840 1.20682 0.75337 0.77843 0.86323 1.93187 1.88404 1.37858 1.96811 1.93173 1.88478 1.80765 1.54002 1.93177 1.30204 1.96443 1.96819 0.91469 0.91701 0.88135 0.87548 0.87360 0.75877 0.94793 0.93796 0.80493 0.92956 0.87680 0.88739 0.89097 0.89833 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.69 37.16 0.32 -1.37 16 2 C -0.11 -1.12 2.01 -90.62 -0.18 -1.30 16 3 H 0.12 1.14 7.95 -51.93 -0.41 0.72 16 4 C -0.15 -1.48 4.93 -27.88 -0.14 -1.62 16 5 C 0.52 6.61 6.88 -10.98 -0.08 6.54 16 6 O -0.54 -7.88 10.99 5.56 0.06 -7.82 16 7 N -0.71 -9.33 4.50 -53.80 -0.24 -9.57 16 8 C 0.16 2.40 2.43 -67.93 -0.17 2.24 16 9 H 0.09 1.47 7.34 -51.93 -0.38 1.09 16 10 C 0.15 2.68 5.80 -4.04 -0.02 2.66 16 11 N -0.75 -16.78 5.24 -59.91 -0.31 -17.09 16 12 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 15 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 16 Si 0.88 21.53 27.73 -169.99 -4.71 16.82 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 20 C -0.16 -2.03 5.36 -90.62 -0.49 -2.52 16 21 C -0.17 -1.99 10.18 -26.69 -0.27 -2.26 16 22 C -0.19 -2.21 9.74 -26.69 -0.26 -2.47 16 23 C 0.45 4.61 2.69 37.16 0.10 4.71 16 24 F -0.18 -2.03 16.37 2.25 0.04 -1.99 16 25 F -0.18 -1.95 16.80 2.25 0.04 -1.91 16 26 F -0.18 -1.92 16.71 2.25 0.04 -1.88 16 27 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 28 H 0.06 0.68 7.80 -51.93 -0.41 0.28 16 29 H 0.10 1.24 5.95 -51.93 -0.31 0.93 16 30 H 0.11 0.86 7.66 -51.93 -0.40 0.46 16 31 H 0.11 1.07 7.94 -51.93 -0.41 0.66 16 32 H 0.41 4.98 8.60 -40.82 -0.35 4.63 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.36 7.98 5.20 -40.82 -0.21 7.77 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.11 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.12 1.58 5.02 -51.93 -0.26 1.31 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -30.69 344.09 -6.24 -36.93 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.67 Total: 11.33 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.43 Total: -2.16 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.22 Total: -54.50 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.06 Total: -7.82 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.69 -6.24 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754450470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.606 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds