Wall clock time and date at job start Tue Mar 31 2020 09:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.50702 * 109.47031 * 119.99857 * 2 1 3 5 5 O 1.21282 * 119.99889 * 85.07639 * 4 2 1 6 6 N 1.34780 * 120.00023 * 265.07425 * 4 2 1 7 7 C 1.47019 * 125.64435 * 4.72517 * 6 4 2 8 8 C 1.54323 * 107.27382 * 180.96991 * 7 6 4 9 9 C 1.55149 * 102.86286 * 22.52454 * 8 7 6 10 10 H 1.08994 * 111.00524 * 82.38030 * 9 8 7 11 11 C 1.53003 * 111.03925 * 206.21683 * 9 8 7 12 12 C 1.53000 * 109.47070 * 287.21620 * 11 9 8 13 13 N 1.46500 * 109.47152 * 179.97438 * 12 11 9 14 14 C 1.36934 * 119.99664 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00310 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99613 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00150 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46873 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46973 * 119.99522 * 18 16 14 21 21 H 1.48498 * 109.47011 * 239.99807 * 18 16 14 22 22 C 1.47426 * 125.64983 * 185.03328 * 6 4 2 23 23 C 1.52993 * 109.47107 * 239.99641 * 2 1 3 24 24 F 1.39899 * 109.47646 * 299.99951 * 23 2 1 25 25 F 1.39904 * 109.46932 * 179.97438 * 23 2 1 26 26 F 1.39899 * 109.47223 * 60.00059 * 23 2 1 27 27 H 1.09001 * 109.46511 * 179.20987 * 1 2 3 28 28 H 1.09000 * 109.46930 * 299.20355 * 1 2 3 29 29 H 1.08998 * 109.46736 * 59.20773 * 1 2 3 30 30 H 1.08997 * 109.88977 * 300.51187 * 7 6 4 31 31 H 1.08997 * 109.88590 * 61.68164 * 7 6 4 32 32 H 1.09007 * 110.92003 * 264.11075 * 8 7 6 33 33 H 1.08994 * 110.59019 * 140.78792 * 8 7 6 34 34 H 1.08997 * 109.46821 * 47.21534 * 11 9 8 35 35 H 1.08998 * 109.47157 * 167.21784 * 11 9 8 36 36 H 1.08997 * 109.46892 * 300.00093 * 12 11 9 37 37 H 1.09002 * 109.46603 * 59.99742 * 12 11 9 38 38 H 0.96998 * 119.99666 * 359.97438 * 13 12 11 39 39 H 0.96996 * 120.00359 * 179.97438 * 17 16 14 40 40 H 1.09000 * 110.36786 * 274.67558 * 22 6 4 41 41 H 1.08999 * 110.36177 * 36.88790 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1495 -1.9175 1.2284 6 7 2.3515 -0.0042 2.3333 7 6 2.1664 1.4439 2.5066 8 6 2.6939 1.8085 3.9103 9 6 3.6714 0.6455 4.2248 10 1 4.6446 0.8180 3.7653 11 6 3.8101 0.4375 5.7343 12 6 4.6341 1.5792 6.3329 13 7 4.7664 1.3804 7.7783 14 6 5.4674 2.2833 8.5322 15 1 5.9230 3.1418 8.0613 16 6 5.5932 2.0946 9.9017 17 7 5.0383 1.0481 10.4756 18 14 6.5500 3.3260 10.9302 19 1 7.0715 4.4045 10.0527 20 1 5.6544 3.9136 11.9587 21 1 7.6850 2.6383 11.5966 22 6 2.9498 -0.5549 3.5629 23 6 2.0400 -0.7213 -1.2491 24 9 1.5738 -2.0403 -1.2492 25 9 3.4391 -0.7208 -1.2494 26 9 1.5737 -0.0619 -2.3915 27 1 -0.3632 -1.0276 -0.0142 28 1 -0.3633 0.5014 0.8970 29 1 -0.3633 0.5261 -0.8828 30 1 2.7297 1.9835 1.7453 31 1 1.1079 1.6937 2.4341 32 1 1.8812 1.8363 4.6364 33 1 3.2230 2.7611 3.8855 34 1 2.8208 0.4248 6.1917 35 1 4.3112 -0.5114 5.9258 36 1 5.6233 1.5919 5.8754 37 1 4.1330 2.5281 6.1413 38 1 4.3568 0.6095 8.2012 39 1 5.1265 0.9160 11.4325 40 1 2.1730 -0.9414 4.2227 41 1 3.6641 -1.3410 3.3180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754925246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:15 Heat of formation + Delta-G solvation = -187.993448 kcal Electronic energy + Delta-G solvation = -25699.006105 eV Core-core repulsion = 21391.733294 eV Total energy + Delta-G solvation = -4307.272812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.41608 -47.95030 -47.80238 -40.54880 -38.15712 -35.25730 -34.47341 -32.94695 -30.94184 -29.71246 -27.64712 -26.92401 -24.69939 -23.38298 -22.79660 -21.49827 -20.28922 -19.87270 -18.97931 -18.69313 -17.76657 -17.33666 -17.13787 -16.14826 -15.50926 -15.23743 -14.78895 -14.69092 -14.56169 -14.29930 -14.24562 -14.03818 -13.96640 -13.75371 -13.63907 -13.56972 -13.26596 -13.15847 -12.90079 -12.67189 -12.42421 -12.30983 -11.84965 -11.72758 -11.39245 -11.12237 -10.86732 -10.71903 -10.54889 -10.38854 -10.26273 -10.01268 -9.71835 -8.99072 -8.89645 -6.94422 -5.78743 -3.07628 1.91251 2.28391 2.61253 3.31087 3.41638 3.47041 3.49498 3.59193 3.62582 4.10522 4.34771 4.35417 4.41672 4.48773 4.57996 4.71849 4.94031 4.96046 5.05276 5.13302 5.27137 5.45937 5.50064 5.54507 5.58246 5.68201 5.74232 5.78652 5.95084 6.02663 6.18966 6.31366 6.32865 6.79431 6.84012 7.07428 7.64925 7.67993 8.40334 9.51324 10.09693 10.43703 11.44310 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.040579 B = 0.002237 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.842157 B =12511.268097 C =12600.648996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.160 4.160 3 H 0.132 0.868 4 C 0.535 3.465 5 O -0.519 6.519 6 N -0.610 5.610 7 C 0.093 3.907 8 C -0.127 4.127 9 C -0.094 4.094 10 H 0.087 0.913 11 C -0.116 4.116 12 C 0.155 3.845 13 N -0.735 5.735 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.110 3.890 23 C 0.470 3.530 24 F -0.164 7.164 25 F -0.179 7.179 26 F -0.180 7.180 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 0.168 -24.776 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 H 0.150 0.850 4 C 0.320 3.680 5 O -0.394 6.394 6 N -0.344 5.344 7 C -0.030 4.030 8 C -0.164 4.164 9 C -0.114 4.114 10 H 0.105 0.895 11 C -0.154 4.154 12 C 0.028 3.972 13 N -0.379 5.379 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.012 4.012 23 C 0.415 3.585 24 F -0.146 7.146 25 F -0.160 7.160 26 F -0.161 7.161 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.461 -0.403 -24.831 26.948 hybrid contribution 0.519 0.456 0.573 0.898 sum -9.943 0.053 -24.258 26.216 Atomic orbital electron populations 1.21783 0.88768 1.05033 1.04775 1.22593 1.01796 1.02631 0.91203 0.85013 1.19343 0.78420 0.87101 0.83095 1.90824 1.52758 1.13116 1.82709 1.48430 1.61690 1.09461 1.14818 1.22246 1.01161 0.80313 0.99234 1.22753 0.99700 0.99566 0.94408 1.22358 0.98657 0.93413 0.96967 0.89490 1.21676 1.01465 1.00536 0.91731 1.20616 0.95894 0.94673 0.86059 1.42383 1.64499 1.29643 1.01395 1.19271 1.25273 1.02884 0.89622 0.91146 1.24760 1.01337 0.98247 0.96769 1.69667 1.49205 1.29159 1.10202 0.86115 0.79299 0.80395 0.80376 1.20552 1.21846 1.21841 1.22439 0.97357 0.97098 0.84286 1.19841 0.75710 0.78273 0.84674 1.93248 1.88134 1.36598 1.96591 1.93219 1.29669 1.96433 1.96725 1.93189 1.88506 1.80863 1.53581 0.90216 0.89748 0.89791 0.91102 0.91029 0.89812 0.89340 0.91484 0.91412 0.96499 0.96321 0.78302 0.93531 0.90720 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.93 37.16 0.33 -0.51 16 2 C -0.16 -1.25 2.35 -91.77 -0.22 -1.47 16 3 H 0.13 0.68 6.90 -51.93 -0.36 0.32 16 4 C 0.53 6.02 6.58 -10.98 -0.07 5.95 16 5 O -0.52 -7.90 15.66 5.56 0.09 -7.82 16 6 N -0.61 -6.15 3.33 -170.52 -0.57 -6.72 16 7 C 0.09 0.67 6.19 -3.07 -0.02 0.65 16 8 C -0.13 -1.12 5.91 -24.90 -0.15 -1.27 16 9 C -0.09 -1.04 3.00 -88.47 -0.27 -1.30 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.12 -1.67 4.84 -26.73 -0.13 -1.80 16 12 C 0.16 2.92 6.16 -4.04 -0.02 2.90 16 13 N -0.74 -18.33 5.60 -59.91 -0.34 -18.67 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C 0.11 1.22 6.36 -2.53 -0.02 1.21 16 23 C 0.47 4.63 2.57 37.15 0.10 4.72 16 24 F -0.16 -1.97 15.38 2.25 0.03 -1.93 16 25 F -0.18 -2.04 17.03 2.25 0.04 -2.00 16 26 F -0.18 -1.57 16.81 2.25 0.04 -1.53 16 27 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.35 7.82 -51.93 -0.41 -0.06 16 30 H 0.07 0.40 7.63 -51.93 -0.40 0.01 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.97 7.97 -51.93 -0.41 0.56 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 38 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -33.33 348.68 -6.48 -39.81 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.03 Total: 2.11 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.71 Total: 1.74 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.18 Total: -52.83 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.33 -6.48 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754925246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.185 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds