Wall clock time and date at job start Tue Mar 31 2020 10:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47318 * 2 1 4 4 C 1.34779 * 120.00028 * 82.84843 * 3 2 1 5 5 O 1.21586 * 120.00053 * 180.02562 * 4 3 2 6 6 N 1.34775 * 120.00131 * 359.97438 * 4 3 2 7 7 C 1.40019 * 120.00542 * 175.92271 * 6 4 3 8 8 C 1.38908 * 120.00465 * 216.03414 * 7 6 4 9 9 C 1.38014 * 120.00160 * 180.02562 * 8 7 6 10 10 C 1.38903 * 119.99954 * 0.02562 * 9 8 7 11 11 O 1.35784 * 119.99581 * 179.97438 * 10 9 8 12 12 C 1.34808 * 117.00103 * 6.86603 * 11 10 9 13 13 H 1.08002 * 120.00208 * 354.79098 * 12 11 10 14 14 C 1.38634 * 119.99843 * 174.78945 * 12 11 10 15 15 N 1.31575 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99738 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47361 * 60.00300 * 16 14 12 18 18 H 1.48499 * 109.47006 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47391 * 299.99727 * 16 14 12 20 20 C 1.38898 * 120.00139 * 0.23987 * 10 9 8 21 21 C 1.38009 * 120.00110 * 359.48056 * 20 10 9 22 22 C 1.46503 * 120.00146 * 262.84580 * 3 2 1 23 23 H 1.09001 * 109.47222 * 173.79141 * 22 3 2 24 24 C 1.52999 * 109.47034 * 53.79129 * 22 3 2 25 25 C 1.53004 * 109.47192 * 293.79208 * 22 3 2 26 26 O 1.42892 * 109.46785 * 67.00607 * 25 22 3 27 27 H 1.09005 * 109.46830 * 299.99868 * 1 2 3 28 28 H 1.09004 * 109.47085 * 59.99730 * 1 2 3 29 29 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47109 * 240.00019 * 2 1 3 31 31 H 1.09004 * 109.47085 * 120.00269 * 2 1 3 32 32 H 0.97005 * 119.99813 * 355.91872 * 6 4 3 33 33 H 1.08001 * 120.00080 * 0.04165 * 8 7 6 34 34 H 1.08000 * 119.99776 * 180.02562 * 9 8 7 35 35 H 0.97004 * 119.99757 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00019 * 179.72321 * 20 10 9 37 37 H 1.07999 * 120.00055 * 180.23465 * 21 20 10 38 38 H 1.09001 * 109.47126 * 300.00070 * 24 22 3 39 39 H 1.09005 * 109.47013 * 59.99733 * 24 22 3 40 40 H 1.09001 * 109.47248 * 179.97438 * 24 22 3 41 41 H 1.09002 * 109.46939 * 187.00573 * 25 22 3 42 42 H 1.08999 * 109.46805 * 307.00714 * 25 22 3 43 43 H 0.96708 * 113.99824 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1060 2.0649 1.1581 5 8 2.5109 3.2114 1.1581 6 7 1.7439 1.4782 2.3162 7 6 1.9148 2.1574 3.5286 8 6 2.2778 1.4571 4.6720 9 6 2.4458 2.1265 5.8672 10 6 2.2514 3.5006 5.9268 11 8 2.4161 4.1590 7.1028 12 6 2.9053 3.4485 8.1388 13 1 3.0676 2.3857 8.0360 14 6 3.2001 4.0821 9.3361 15 7 3.0019 5.3768 9.4615 16 14 3.8786 3.0977 10.7714 17 1 5.1621 2.4650 10.3749 18 1 4.1079 4.0015 11.9271 19 1 2.9045 2.0440 11.1535 20 6 1.8830 4.2001 4.7848 21 6 1.7206 3.5316 3.5884 22 6 2.4115 2.0191 -1.2589 23 1 2.6400 3.0694 -1.0781 24 6 1.2636 1.9127 -2.2648 25 6 3.6493 1.3174 -1.8214 26 8 3.3063 -0.0140 -2.2106 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3647 0.5854 2.3097 33 1 2.4289 0.3887 4.6257 34 1 2.7285 1.5820 6.7560 35 1 3.2078 5.8200 10.2995 36 1 1.7275 5.2678 4.8322 37 1 1.4379 4.0762 2.6996 38 1 1.0351 0.8624 -2.4456 39 1 0.3818 2.4126 -1.8639 40 1 1.5560 2.3878 -3.2013 41 1 4.0155 1.8666 -2.6889 42 1 4.4264 1.2839 -1.0579 43 1 4.0450 -0.5194 -2.5769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771715278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:49 Heat of formation + Delta-G solvation = -67.666314 kcal Electronic energy + Delta-G solvation = -25407.956801 eV Core-core repulsion = 21647.758506 eV Total energy + Delta-G solvation = -3760.198295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64806 -38.94123 -37.88212 -36.48813 -35.63689 -34.06864 -32.30009 -31.90687 -30.15576 -30.07114 -27.58644 -26.57252 -25.28486 -23.57725 -22.53550 -22.05118 -20.73685 -19.43199 -18.60137 -17.92915 -17.52423 -17.15312 -16.45893 -15.83038 -15.50708 -14.73867 -14.51999 -14.49872 -14.22883 -14.17703 -13.79182 -13.50864 -13.39025 -12.97031 -12.89524 -12.76947 -12.58752 -12.40187 -12.14447 -11.76781 -11.72424 -11.51961 -11.44485 -11.22821 -11.03858 -10.93718 -10.69444 -10.44952 -10.34176 -9.79547 -9.55976 -9.17940 -8.77417 -8.60867 -8.13598 -6.85222 -6.39539 -3.97753 2.22022 2.29646 2.66981 3.15476 3.16371 3.19790 3.34841 3.91652 3.98094 4.01516 4.62210 4.66494 4.77754 4.83398 4.98240 5.09220 5.14015 5.17861 5.28541 5.36673 5.40367 5.48652 5.56879 5.61537 5.71776 5.77728 5.85414 6.01259 6.05973 6.20279 6.25962 6.33287 6.50675 6.79419 6.91801 6.97982 7.17019 7.23997 7.29054 7.31887 7.48590 7.86939 8.04410 8.06682 8.74335 9.05774 9.77335 10.78581 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.002638 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.528028 B =10610.407128 C =10782.536827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.620 5.620 4 C 0.701 3.299 5 O -0.579 6.579 6 N -0.674 5.674 7 C 0.054 3.946 8 C -0.093 4.093 9 C -0.219 4.219 10 C 0.146 3.854 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.178 4.178 21 C -0.066 4.066 22 C 0.156 3.844 23 H 0.113 0.887 24 C -0.156 4.156 25 C 0.066 3.934 26 O -0.568 6.568 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.270 0.730 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -13.002 -22.076 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.026 4.026 3 N -0.358 5.358 4 C 0.403 3.597 5 O -0.457 6.457 6 N -0.322 5.322 7 C -0.039 4.039 8 C -0.113 4.113 9 C -0.239 4.239 10 C 0.092 3.908 11 O -0.082 6.082 12 C -0.468 4.468 13 H 0.108 0.892 14 C -0.166 4.166 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.198 4.198 21 C -0.086 4.086 22 C 0.051 3.949 23 H 0.131 0.869 24 C -0.214 4.214 25 C -0.013 4.013 26 O -0.374 6.374 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.116 -11.558 -21.622 24.609 hybrid contribution 0.765 -1.275 0.556 1.587 sum -1.352 -12.833 -21.066 24.704 Atomic orbital electron populations 1.22371 0.96338 1.02154 1.02796 1.21700 0.93939 0.82739 1.04197 1.47175 1.69261 1.14048 1.05306 1.15969 0.78648 0.84673 0.80394 1.90903 1.53152 1.16354 1.85269 1.42470 1.65841 1.19841 1.04032 1.17070 1.10674 0.92091 0.84057 1.20457 1.00333 0.98501 0.92052 1.20945 1.10387 0.94422 0.98138 1.19402 0.93392 0.90744 0.87247 1.83989 1.71648 1.37516 1.15051 1.21253 1.43079 0.92882 0.89539 0.89203 1.25273 0.97046 0.96041 0.98198 1.70042 1.44893 1.08474 1.26489 0.85795 0.79356 0.78794 0.79547 1.19552 1.20328 1.19563 1.20153 1.09417 0.99772 0.90457 1.20738 0.98184 0.92726 0.96951 1.21020 0.93291 0.97991 0.82551 0.86939 1.22099 0.98085 1.03006 0.98240 1.22661 0.97148 0.83299 0.98213 1.86412 1.40196 1.25967 1.84832 0.92560 0.91862 0.91657 0.87225 0.91757 0.76677 0.87349 0.85189 0.92031 0.86195 0.85337 0.91216 0.92356 0.91808 0.92618 0.93098 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.87 37.16 0.37 -1.06 16 2 C 0.10 0.85 4.85 -4.05 -0.02 0.83 16 3 N -0.62 -7.13 2.39 -171.80 -0.41 -7.54 16 4 C 0.70 10.93 8.06 -86.92 -0.70 10.23 16 5 O -0.58 -11.22 13.19 5.29 0.07 -11.15 16 6 N -0.67 -10.13 5.12 -14.18 -0.07 -10.21 16 7 C 0.05 1.01 6.28 -83.62 -0.53 0.48 16 8 C -0.09 -1.73 9.96 -39.42 -0.39 -2.13 16 9 C -0.22 -4.82 9.16 -39.42 -0.36 -5.18 16 10 C 0.15 3.63 6.64 -39.09 -0.26 3.37 16 11 O -0.18 -5.20 9.75 0.01 0.00 -5.20 16 12 C -0.39 -11.07 9.48 30.88 0.29 -10.78 16 13 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 16 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.18 -4.05 9.98 -39.42 -0.39 -4.44 16 21 C -0.07 -1.36 8.68 -39.42 -0.34 -1.70 16 22 C 0.16 1.56 3.15 -67.93 -0.21 1.35 16 23 H 0.11 1.33 6.92 -51.93 -0.36 0.97 16 24 C -0.16 -1.28 7.85 37.16 0.29 -0.99 16 25 C 0.07 0.51 6.84 37.16 0.25 0.77 16 26 O -0.57 -3.72 9.95 -35.23 -0.35 -4.07 16 27 H 0.06 0.52 7.60 -51.93 -0.39 0.13 16 28 H 0.06 0.52 6.26 -51.93 -0.32 0.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.11 0.90 4.96 -51.93 -0.26 0.64 16 31 H 0.06 0.54 6.83 -51.93 -0.35 0.19 16 32 H 0.40 4.75 6.20 -40.82 -0.25 4.49 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 2.81 5.65 -52.49 -0.30 2.52 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 37 H 0.13 2.63 6.31 -52.49 -0.33 2.30 16 38 H 0.07 0.56 6.05 -51.93 -0.31 0.25 16 39 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 1.02 9.12 45.56 0.42 1.43 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -34.31 347.27 -6.72 -41.03 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.83 Total: 9.43 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.10 Total: -8.26 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.28 Total: -42.72 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.28 Total: -20.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.31 -6.72 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771715278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.634 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds