Wall clock time and date at job start Tue Mar 31 2020 10:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47318 * 2 1 4 4 C 1.34779 * 120.00028 * 82.84843 * 3 2 1 5 5 O 1.21586 * 120.00053 * 180.02562 * 4 3 2 6 6 N 1.34775 * 120.00131 * 359.97438 * 4 3 2 7 7 C 1.40019 * 120.00542 * 175.92271 * 6 4 3 8 8 C 1.38908 * 120.00465 * 216.03414 * 7 6 4 9 9 C 1.38014 * 120.00160 * 180.02562 * 8 7 6 10 10 C 1.38903 * 119.99954 * 0.02562 * 9 8 7 11 11 O 1.35784 * 119.99581 * 179.97438 * 10 9 8 12 12 C 1.34808 * 117.00103 * 6.86603 * 11 10 9 13 13 H 1.08002 * 120.00208 * 354.79098 * 12 11 10 14 14 C 1.38634 * 119.99843 * 174.78945 * 12 11 10 15 15 N 1.31575 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99738 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47361 * 60.00300 * 16 14 12 18 18 H 1.48499 * 109.47006 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47391 * 299.99727 * 16 14 12 20 20 C 1.38898 * 120.00139 * 0.23987 * 10 9 8 21 21 C 1.38009 * 120.00110 * 359.48056 * 20 10 9 22 22 C 1.46503 * 120.00146 * 262.84580 * 3 2 1 23 23 H 1.09001 * 109.47222 * 173.79141 * 22 3 2 24 24 C 1.52999 * 109.47034 * 53.79129 * 22 3 2 25 25 C 1.53004 * 109.47192 * 293.79208 * 22 3 2 26 26 O 1.42892 * 109.46785 * 67.00607 * 25 22 3 27 27 H 1.09005 * 109.46830 * 299.99868 * 1 2 3 28 28 H 1.09004 * 109.47085 * 59.99730 * 1 2 3 29 29 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47109 * 240.00019 * 2 1 3 31 31 H 1.09004 * 109.47085 * 120.00269 * 2 1 3 32 32 H 0.97005 * 119.99813 * 355.91872 * 6 4 3 33 33 H 1.08001 * 120.00080 * 0.04165 * 8 7 6 34 34 H 1.08000 * 119.99776 * 180.02562 * 9 8 7 35 35 H 0.97004 * 119.99757 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.00019 * 179.72321 * 20 10 9 37 37 H 1.07999 * 120.00055 * 180.23465 * 21 20 10 38 38 H 1.09001 * 109.47126 * 300.00070 * 24 22 3 39 39 H 1.09005 * 109.47013 * 59.99733 * 24 22 3 40 40 H 1.09001 * 109.47248 * 179.97438 * 24 22 3 41 41 H 1.09002 * 109.46939 * 187.00573 * 25 22 3 42 42 H 1.08999 * 109.46805 * 307.00714 * 25 22 3 43 43 H 0.96708 * 113.99824 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1060 2.0649 1.1581 5 8 2.5109 3.2114 1.1581 6 7 1.7439 1.4782 2.3162 7 6 1.9148 2.1574 3.5286 8 6 2.2778 1.4571 4.6720 9 6 2.4458 2.1265 5.8672 10 6 2.2514 3.5006 5.9268 11 8 2.4161 4.1590 7.1028 12 6 2.9053 3.4485 8.1388 13 1 3.0676 2.3857 8.0360 14 6 3.2001 4.0821 9.3361 15 7 3.0019 5.3768 9.4615 16 14 3.8786 3.0977 10.7714 17 1 5.1621 2.4650 10.3749 18 1 4.1079 4.0015 11.9271 19 1 2.9045 2.0440 11.1535 20 6 1.8830 4.2001 4.7848 21 6 1.7206 3.5316 3.5884 22 6 2.4115 2.0191 -1.2589 23 1 2.6400 3.0694 -1.0781 24 6 1.2636 1.9127 -2.2648 25 6 3.6493 1.3174 -1.8214 26 8 3.3063 -0.0140 -2.2106 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3647 0.5854 2.3097 33 1 2.4289 0.3887 4.6257 34 1 2.7285 1.5820 6.7560 35 1 3.2078 5.8200 10.2995 36 1 1.7275 5.2678 4.8322 37 1 1.4379 4.0762 2.6996 38 1 1.0351 0.8624 -2.4456 39 1 0.3818 2.4126 -1.8639 40 1 1.5560 2.3878 -3.2013 41 1 4.0155 1.8666 -2.6889 42 1 4.4264 1.2839 -1.0579 43 1 4.0450 -0.5194 -2.5769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771715278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:48 Heat of formation + Delta-G solvation = -92.420667 kcal Electronic energy + Delta-G solvation = -25409.030230 eV Core-core repulsion = 21647.758506 eV Total energy + Delta-G solvation = -3761.271724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87268 -40.61057 -38.99984 -37.92626 -36.56050 -35.45411 -34.16359 -32.87472 -31.85870 -31.00371 -29.17229 -27.32558 -27.16579 -24.45025 -23.95023 -23.53931 -22.14276 -20.60343 -19.82679 -19.49001 -18.89694 -18.22219 -17.90114 -16.88589 -16.64796 -16.34761 -16.14805 -15.58619 -15.46285 -15.28330 -15.15674 -14.98039 -14.59703 -14.48761 -14.06449 -13.73671 -13.57894 -13.55566 -13.33236 -13.22121 -13.08415 -12.81764 -12.65964 -12.46697 -12.36396 -12.14345 -11.97694 -11.76054 -11.35425 -11.24038 -10.97516 -10.77346 -10.51644 -9.83587 -9.68411 -8.57268 -8.43562 -6.11337 0.53145 0.59162 1.37379 1.47951 1.54003 1.57105 2.06770 2.20710 2.84692 2.89135 3.16899 3.38450 3.54137 3.90588 4.04895 4.07438 4.15015 4.15242 4.31304 4.40851 4.50735 4.56877 4.58529 4.62995 4.71940 4.75715 4.82765 4.90758 5.05825 5.07395 5.10648 5.20801 5.31158 5.34392 5.39236 5.45325 5.58292 5.64921 5.71728 5.98480 6.04393 6.20017 6.89620 6.92746 7.00284 7.51245 7.81527 8.79537 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.002638 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.528028 B =10610.407128 C =10782.536827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 N -0.609 5.609 4 C 0.695 3.305 5 O -0.622 6.622 6 N -0.664 5.664 7 C 0.080 3.920 8 C -0.081 4.081 9 C -0.218 4.218 10 C 0.108 3.892 11 O -0.232 6.232 12 C -0.413 4.413 13 H 0.106 0.894 14 C -0.025 4.025 15 N -0.924 5.924 16 Si 1.021 2.979 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.254 1.254 20 C -0.189 4.189 21 C -0.071 4.071 22 C 0.145 3.855 23 H 0.088 0.912 24 C -0.146 4.146 25 C 0.076 3.924 26 O -0.573 6.573 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.417 0.583 33 H 0.156 0.844 34 H 0.134 0.866 35 H 0.272 0.728 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 -16.988 -24.062 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 N -0.345 5.345 4 C 0.397 3.603 5 O -0.503 6.503 6 N -0.314 5.314 7 C -0.014 4.014 8 C -0.102 4.102 9 C -0.237 4.237 10 C 0.057 3.943 11 O -0.138 6.138 12 C -0.489 4.489 13 H 0.124 0.876 14 C -0.223 4.223 15 N -0.562 5.562 16 Si 0.839 3.161 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.208 4.208 21 C -0.092 4.092 22 C 0.041 3.959 23 H 0.106 0.894 24 C -0.204 4.204 25 C -0.003 4.003 26 O -0.382 6.382 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.256 0.744 33 H 0.174 0.826 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.912 -15.638 -23.719 28.475 hybrid contribution 0.624 -0.160 0.745 0.985 sum -1.288 -15.798 -22.974 27.911 Atomic orbital electron populations 1.22337 0.95482 1.03406 1.02015 1.21942 0.94556 0.80965 1.05333 1.47282 1.67993 1.14859 1.04373 1.16188 0.78446 0.84329 0.81308 1.90886 1.54973 1.18416 1.85984 1.42298 1.65920 1.20406 1.02746 1.17176 1.07220 0.91461 0.85565 1.20796 0.98407 1.00633 0.90318 1.21104 1.09745 0.93228 0.99650 1.19830 0.95293 0.92366 0.86798 1.83958 1.74162 1.39196 1.16534 1.21840 1.43323 0.93819 0.89951 0.87632 1.26638 0.97112 0.97249 1.01254 1.70206 1.47566 1.10829 1.27607 0.84624 0.79107 0.77281 0.75047 1.18128 1.19921 1.17839 1.20250 1.09850 0.99753 0.90992 1.20804 0.98440 0.93992 0.95929 1.21213 0.95221 0.97129 0.82344 0.89361 1.22015 0.96763 1.03453 0.98162 1.22421 0.95181 0.84189 0.98482 1.86335 1.41496 1.25357 1.84963 0.93934 0.92080 0.89393 0.85978 0.90778 0.74383 0.82612 0.84868 0.91912 0.87059 0.85269 0.90482 0.93499 0.90216 0.90598 0.94586 0.75400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.87 71.98 0.71 -1.50 16 2 C 0.09 1.32 4.85 86.38 0.42 1.74 16 3 N -0.61 -12.71 2.39 -815.72 -1.95 -14.66 16 4 C 0.70 20.63 8.06 179.05 1.44 22.07 16 5 O -0.62 -24.01 13.19 -3.99 -0.05 -24.06 16 6 N -0.66 -18.24 5.12 -317.05 -1.62 -19.86 16 7 C 0.08 2.85 6.28 38.16 0.24 3.09 16 8 C -0.08 -2.81 9.96 22.38 0.22 -2.59 16 9 C -0.22 -9.46 9.16 22.38 0.20 -9.25 16 10 C 0.11 5.58 6.64 22.59 0.15 5.73 16 11 O -0.23 -14.29 9.75 -22.89 -0.22 -14.52 16 12 C -0.41 -24.23 9.48 67.91 0.64 -23.58 16 13 H 0.11 5.55 5.21 -2.91 -0.02 5.53 16 14 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 15 N -0.92 -57.76 13.67 21.61 0.30 -57.46 16 16 Si 1.02 42.96 29.55 68.60 2.03 44.99 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 20 C -0.19 -8.96 9.98 22.37 0.22 -8.74 16 21 C -0.07 -2.96 8.68 22.38 0.19 -2.77 16 22 C 0.14 2.66 3.15 44.99 0.14 2.80 16 23 H 0.09 2.08 6.92 -2.39 -0.02 2.06 16 24 C -0.15 -2.06 7.85 71.98 0.56 -1.50 16 25 C 0.08 1.00 6.84 71.98 0.49 1.49 16 26 O -0.57 -5.43 9.95 -148.98 -1.48 -6.91 16 27 H 0.04 0.67 7.60 -2.38 -0.02 0.65 16 28 H 0.06 0.82 6.26 -2.39 -0.01 0.81 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 1.51 4.96 -2.39 -0.01 1.50 16 31 H 0.07 0.93 6.83 -2.39 -0.02 0.91 16 32 H 0.42 8.36 6.20 -92.70 -0.58 7.79 16 33 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.13 5.65 5.65 -2.91 -0.02 5.64 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 37 H 0.13 5.37 6.31 -2.91 -0.02 5.36 16 38 H 0.08 0.99 6.05 -2.39 -0.01 0.98 16 39 H 0.05 0.77 7.94 -2.38 -0.02 0.75 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.40 0.64 9.12 -74.05 -0.68 -0.03 16 Total: -1.00 -79.68 347.27 2.92 -76.75 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.19 Total: 29.73 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 6.12 Total: -14.00 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.27 Total: -91.98 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.76 Total: -45.49 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -79.68 2.92 -76.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771715278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.666 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds