Wall clock time and date at job start Tue Mar 31 2020 09:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30643 * 128.63774 * 2 1 4 4 O 1.20841 * 109.62100 * 179.97438 * 3 2 1 5 5 N 1.20911 * 115.89937 * 359.69793 * 4 3 2 6 6 C 1.31596 * 109.18265 * 0.49255 * 5 4 3 7 7 C 1.48280 * 128.71221 * 179.82203 * 6 5 4 8 8 O 1.21500 * 119.99733 * 185.19690 * 7 6 5 9 9 N 1.34776 * 120.00002 * 5.19490 * 7 6 5 10 10 C 1.46505 * 120.00060 * 355.59704 * 9 7 6 11 11 C 1.46501 * 120.00017 * 175.59604 * 9 7 6 12 12 C 1.52997 * 109.46867 * 120.00088 * 11 9 7 13 13 C 1.53003 * 109.47023 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.46900 * 299.99915 * 13 12 11 15 15 N 1.46499 * 109.46901 * 299.99858 * 14 13 12 16 16 C 1.36942 * 119.99860 * 204.99557 * 15 14 13 17 17 H 1.07997 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99952 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47514 * 89.99304 * 20 18 16 22 22 H 1.48501 * 109.47094 * 209.99881 * 20 18 16 23 23 H 1.48502 * 109.46952 * 329.99540 * 20 18 16 24 24 C 1.53005 * 109.47102 * 60.00025 * 14 13 12 25 25 C 1.52998 * 109.47058 * 239.99946 * 11 9 7 26 26 H 1.09001 * 109.46931 * 270.01901 * 1 2 3 27 27 H 1.09001 * 109.47214 * 30.01829 * 1 2 3 28 28 H 1.09002 * 109.47138 * 150.02611 * 1 2 3 29 29 H 1.08999 * 109.46817 * 275.61431 * 10 9 7 30 30 H 1.09004 * 109.47016 * 35.60568 * 10 9 7 31 31 H 1.08993 * 109.46924 * 155.61128 * 10 9 7 32 32 H 1.08997 * 109.46959 * 0.02562 * 11 9 7 33 33 H 1.08997 * 109.47202 * 60.00307 * 12 11 9 34 34 H 1.08998 * 109.47084 * 299.99806 * 12 11 9 35 35 H 1.08996 * 109.47291 * 59.99548 * 13 12 11 36 36 H 1.09000 * 109.47274 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.46859 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00309 * 25.00865 * 15 14 13 39 39 H 0.97001 * 120.00065 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.47113 * 59.99710 * 24 14 13 41 41 H 1.08998 * 109.46973 * 180.02562 * 24 14 13 42 42 H 1.09000 * 109.46894 * 60.00184 * 25 11 9 43 43 H 1.08997 * 109.47480 * 299.99981 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6267 0.0005 5 7 3.6101 -0.5737 0.0066 6 6 2.4280 -1.1519 0.0006 7 6 2.1034 -2.5988 0.0008 8 8 0.9485 -2.9622 -0.1007 9 7 3.0895 -3.5106 0.1135 10 6 4.4887 -3.0771 0.1387 11 6 2.7621 -4.9353 0.2109 12 6 3.4030 -5.6867 -0.9576 13 6 3.0607 -7.1745 -0.8563 14 6 3.5962 -7.7323 0.4640 15 7 5.0503 -7.5615 0.5122 16 6 5.8117 -8.3907 1.2920 17 1 5.3401 -9.1709 1.8711 18 6 7.1895 -8.2285 1.3381 19 7 7.7641 -7.2774 0.6328 20 14 8.2281 -9.3601 2.4012 21 1 8.6433 -10.5435 1.6059 22 1 9.4338 -8.6306 2.8696 23 1 7.4328 -9.8058 3.5735 24 6 2.9552 -6.9808 1.6325 25 6 3.2981 -5.4926 1.5311 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 4.8491 -2.9534 -0.8825 30 1 4.5654 -2.1276 0.6686 31 1 5.0924 -3.8277 0.6487 32 1 1.6803 -5.0627 0.1748 33 1 4.4849 -5.5593 -0.9219 34 1 3.0212 -5.2897 -1.8981 35 1 1.9787 -7.3016 -0.8922 36 1 3.5176 -7.7100 -1.6885 37 1 3.3518 -8.7921 0.5364 38 1 5.4739 -6.8609 -0.0080 39 1 8.7270 -7.1643 0.6647 40 1 1.8733 -7.1078 1.5966 41 1 3.3371 -7.3778 2.5730 42 1 2.8415 -4.9572 2.3635 43 1 4.3800 -5.3652 1.5668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964478607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:43 Heat of formation + Delta-G solvation = 92.661798 kcal Electronic energy + Delta-G solvation = -26248.774287 eV Core-core repulsion = 22527.821091 eV Total energy + Delta-G solvation = -3720.953195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.07611 -40.30004 -38.20594 -35.74447 -35.33579 -34.77307 -33.09738 -30.72074 -30.34293 -29.69143 -28.07960 -27.04029 -25.68983 -23.64671 -22.77862 -22.21273 -21.92145 -19.93907 -19.26170 -18.52436 -17.94190 -17.26925 -17.10473 -16.45595 -15.44857 -15.00261 -14.59500 -14.44485 -13.95130 -13.91108 -13.84166 -13.65716 -13.52462 -13.15011 -12.82283 -12.69212 -12.38975 -12.22635 -11.99537 -11.74985 -11.72657 -11.52256 -11.30500 -10.93282 -10.79595 -10.73113 -10.56669 -10.52622 -10.24369 -10.15914 -10.01946 -9.71410 -9.54084 -8.91361 -8.64307 -6.97049 -5.79586 -3.07135 0.57177 1.07688 2.44675 2.77968 3.14927 3.23990 3.41324 3.47301 3.48222 3.62904 4.36850 4.50916 4.57625 4.83431 5.05135 5.13210 5.13750 5.24182 5.28882 5.41734 5.53951 5.58330 5.63883 5.67475 5.70795 5.74868 5.91420 5.95394 6.02397 6.04967 6.13209 6.30872 6.41322 6.49297 6.62286 6.66963 6.82105 6.92837 7.02657 7.21230 7.68899 7.79550 8.23920 8.39952 9.51350 10.09218 10.44163 11.43159 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.003442 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.039125 B = 8132.738005 C = 8938.958910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.359 5.359 4 O 0.335 5.665 5 N -0.314 5.314 6 C -0.037 4.037 7 C 0.599 3.401 8 O -0.522 6.522 9 N -0.582 5.582 10 C 0.061 3.939 11 C 0.144 3.856 12 C -0.123 4.123 13 C -0.119 4.119 14 C 0.171 3.829 15 N -0.721 5.721 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 13.052 -2.167 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 N -0.086 5.086 4 O 0.112 5.888 5 N -0.036 5.036 6 C -0.202 4.202 7 C 0.383 3.617 8 O -0.398 6.398 9 N -0.312 5.312 10 C -0.081 4.081 11 C 0.042 3.958 12 C -0.161 4.161 13 C -0.157 4.157 14 C 0.061 3.939 15 N -0.363 5.363 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.170 4.170 25 C -0.157 4.157 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.727 13.408 -2.105 18.606 hybrid contribution 0.411 -0.810 0.472 1.023 sum -12.316 12.598 -1.633 17.694 Atomic orbital electron populations 1.20342 0.82995 1.05267 1.04674 1.26220 1.00326 0.85238 0.98947 1.75045 0.91261 1.24120 1.18133 1.85084 1.23232 1.17204 1.63293 1.75581 1.22712 0.92417 1.12874 1.26147 0.87953 0.98518 1.07570 1.16573 0.85493 0.81520 0.78090 1.90780 1.19060 1.79280 1.50648 1.47903 1.06852 1.07144 1.69349 1.22238 0.80771 1.02107 1.03002 1.21384 1.01285 0.76447 0.96673 1.21800 1.02009 0.95744 0.96558 1.21753 1.00033 0.94491 0.99467 1.20252 0.85794 0.96678 0.91143 1.42481 0.99703 1.39256 1.54881 1.19250 0.88862 1.09375 1.19221 0.91268 1.24693 0.96629 0.99021 1.00577 1.69641 1.09667 1.34177 1.44774 0.86237 0.80153 0.80065 0.80012 1.21837 1.21873 1.20859 1.22118 0.98607 0.94526 1.01792 1.21763 1.02868 0.96554 0.94478 0.88924 0.89508 0.87877 0.91889 0.89827 0.88879 0.88370 0.90481 0.92575 0.92253 0.91459 0.93239 0.78203 0.93586 0.93511 0.91641 0.93209 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.26 36.01 0.37 -0.22 16 2 C 0.06 0.64 7.79 -79.33 -0.62 0.02 16 3 N -0.36 -4.05 12.22 33.76 0.41 -3.64 16 4 O 0.33 3.83 11.65 27.26 0.32 4.15 16 5 N -0.31 -3.84 9.07 33.49 0.30 -3.54 16 6 C -0.04 -0.46 7.18 -80.07 -0.58 -1.04 16 7 C 0.60 8.57 7.70 -12.13 -0.09 8.48 16 8 O -0.52 -8.21 15.26 5.37 0.08 -8.12 16 9 N -0.58 -8.30 2.76 -174.89 -0.48 -8.78 16 10 C 0.06 0.83 8.79 59.85 0.53 1.36 16 11 C 0.14 2.15 2.51 -67.93 -0.17 1.98 16 12 C -0.12 -1.88 5.03 -26.73 -0.13 -2.01 16 13 C -0.12 -1.86 5.61 -26.73 -0.15 -2.01 16 14 C 0.17 3.18 3.10 -67.92 -0.21 2.97 16 15 N -0.72 -16.71 4.28 -53.42 -0.23 -16.94 16 16 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 20 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.13 -2.18 5.61 -26.70 -0.15 -2.33 16 25 C -0.12 -1.92 5.04 -26.71 -0.13 -2.06 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.87 7.24 -51.93 -0.38 0.50 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.07 5.33 -51.93 -0.28 0.79 16 31 H 0.09 1.38 6.44 -51.93 -0.33 1.05 16 32 H 0.10 1.51 6.91 -51.93 -0.36 1.15 16 33 H 0.08 1.33 6.04 -51.93 -0.31 1.01 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.38 9.35 6.06 -40.82 -0.25 9.10 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.56 6.13 -51.93 -0.32 1.24 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -29.07 344.86 -6.28 -35.35 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.00 Total: 7.41 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.59 Total: -1.70 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.73 Total: -59.11 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.40 Total: -3.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.07 -6.28 -35.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964478607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.013 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds