Wall clock time and date at job start Tue Mar 31 2020 09:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21578 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.47715 * 120.00326 * 179.97438 * 16 15 14 19 19 C 1.41297 * 125.95597 * 180.02562 * 18 16 15 20 20 C 1.34863 * 107.70774 * 179.97438 * 19 18 16 21 21 N 1.36396 * 107.92362 * 0.11653 * 20 19 18 22 22 N 1.32121 * 125.95249 * 359.68618 * 18 16 15 23 23 C 1.46715 * 123.62082 * 179.76905 * 21 20 19 24 24 C 1.53533 * 107.96209 * 343.02802 * 23 21 20 25 25 C 1.53229 * 109.29786 * 47.28724 * 24 23 21 26 26 O 1.36030 * 128.63465 * 180.15952 * 20 19 18 27 27 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 28 28 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 35 35 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 36 36 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 37 37 H 1.08004 * 126.14487 * 359.94517 * 19 18 16 38 38 H 1.08999 * 109.76484 * 223.41115 * 23 21 20 39 39 H 1.09000 * 109.80924 * 102.66696 * 23 21 20 40 40 H 1.09000 * 109.49769 * 287.34667 * 24 23 21 41 41 H 1.08995 * 109.49884 * 167.23598 * 24 23 21 42 42 H 1.09002 * 109.50006 * 175.46628 * 25 24 23 43 43 H 1.09003 * 109.50337 * 55.35107 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6287 -1.4451 -3.7795 18 6 1.6052 0.3497 -4.8690 19 6 1.8970 -0.0026 -6.2059 20 6 1.3684 0.9465 -7.0049 21 7 0.7625 1.8746 -6.2101 22 7 0.9160 1.4768 -4.8828 23 6 0.0781 3.0648 -6.7275 24 6 0.5341 3.2802 -8.1776 25 6 0.4595 1.9502 -8.9349 26 8 1.3964 1.0258 -8.3626 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 0.6807 1.9070 5.4838 34 1 3.1264 -0.7994 -1.2056 35 1 1.6054 -1.7198 -1.2953 36 1 1.1483 0.8592 -2.3518 37 1 2.4453 -0.8750 -6.5296 38 1 0.3430 3.9335 -6.1249 39 1 -1.0008 2.9120 -6.6993 40 1 1.5608 3.6462 -8.1855 41 1 -0.1167 4.0101 -8.6590 42 1 0.7051 2.1146 -9.9841 43 1 -0.5484 1.5426 -8.8560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753623536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:35 Heat of formation + Delta-G solvation = 14.614144 kcal Electronic energy + Delta-G solvation = -24469.399529 eV Core-core repulsion = 20745.061933 eV Total energy + Delta-G solvation = -3724.337596 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.16482 -39.75524 -38.63149 -36.75340 -35.17303 -34.34497 -32.53991 -31.35289 -29.99860 -29.76757 -27.31628 -26.34695 -25.39925 -24.10769 -23.01480 -22.01300 -20.54293 -20.24135 -19.71297 -18.60511 -17.23554 -16.98024 -16.54273 -16.18419 -15.99167 -15.49229 -15.36644 -15.21110 -14.72303 -14.53039 -14.14878 -13.98101 -13.60405 -13.57009 -13.03181 -12.92859 -12.59968 -12.32804 -12.14991 -11.99261 -11.91799 -11.77230 -11.16424 -11.01907 -10.88866 -10.67423 -10.53519 -10.39602 -10.18249 -9.93302 -9.64835 -9.54198 -8.98441 -8.84772 -8.79528 -6.88434 -5.73968 -3.02045 1.09218 1.71635 1.88391 2.48594 3.18929 3.31229 3.45914 3.51787 3.53974 3.56822 3.79331 4.12317 4.19707 4.46289 4.57660 4.62351 4.72416 4.83947 5.02690 5.06090 5.10439 5.19323 5.27967 5.45583 5.54809 5.61174 5.62061 5.87672 6.01097 6.03613 6.09739 6.15904 6.30645 6.44513 6.50696 6.70812 6.81704 6.82806 6.92067 7.01748 7.54608 7.74329 8.14935 8.45333 9.56562 10.14453 10.49185 11.49166 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.002112 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.249424 B =13251.989914 C =13883.473849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.708 5.708 16 C 0.598 3.402 17 O -0.526 6.526 18 C 0.055 3.945 19 C -0.226 4.226 20 C 0.262 3.738 21 N -0.393 5.393 22 N -0.243 5.243 23 C 0.127 3.873 24 C -0.175 4.175 25 C 0.049 3.951 26 O -0.286 6.286 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 5.014 -31.051 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.367 4.367 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.360 5.360 16 C 0.380 3.620 17 O -0.400 6.400 18 C -0.112 4.112 19 C -0.256 4.256 20 C 0.096 3.904 21 N -0.191 5.191 22 N -0.073 5.073 23 C 0.006 3.994 24 C -0.214 4.214 25 C -0.027 4.027 26 O -0.193 6.193 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.243 0.757 37 H 0.184 0.816 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.615 4.974 -30.541 31.153 hybrid contribution -0.040 0.177 0.408 0.446 sum -3.656 5.152 -30.133 30.788 Atomic orbital electron populations 1.21800 0.94639 1.01963 1.01563 1.21558 0.96781 1.00578 0.94066 0.90438 1.20579 0.96665 0.94204 0.85325 1.42355 1.67029 1.27597 1.00582 1.19297 1.28412 1.05412 0.83627 0.91064 1.24743 1.01115 0.97484 0.97863 1.69672 1.43639 1.16743 1.28300 0.86103 0.77542 0.77836 0.84648 1.20532 1.21933 1.21925 1.21509 1.00422 0.95313 0.82535 1.45938 1.56673 1.27979 1.05362 1.16839 0.79635 0.83989 0.81504 1.90819 1.39769 1.23371 1.86068 1.22027 0.99935 0.94551 0.94717 1.20216 1.13301 1.02797 0.89286 1.19435 0.97840 0.91012 0.82133 1.49296 1.45847 1.19994 1.03979 1.77592 1.20841 1.14085 0.94815 1.21994 0.97309 0.85857 0.94202 1.22655 1.05163 0.99225 0.94354 1.23136 0.93147 0.87803 0.98598 1.86667 1.58041 1.61373 1.13197 0.93808 0.92781 0.91155 0.96026 0.95913 0.78199 0.93626 0.90922 0.90929 0.75709 0.81601 0.87618 0.88967 0.89117 0.86963 0.86110 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.94 37.16 0.33 -1.87 16 2 C -0.11 -1.77 2.46 -90.62 -0.22 -1.99 16 3 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.16 3.23 5.65 -4.04 -0.02 3.21 16 5 N -0.73 -18.55 5.33 -59.91 -0.32 -18.87 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 8 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 9 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 10 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.13 1.81 5.06 -4.04 -0.02 1.79 16 15 N -0.71 -9.54 5.28 -61.29 -0.32 -9.87 16 16 C 0.60 8.84 7.83 -12.39 -0.10 8.74 16 17 O -0.53 -9.22 16.90 5.30 0.09 -9.13 16 18 C 0.06 0.74 7.10 -82.71 -0.59 0.15 16 19 C -0.23 -2.79 10.58 -39.62 -0.42 -3.21 16 20 C 0.26 2.76 7.57 -16.72 -0.13 2.64 16 21 N -0.39 -3.85 4.08 -60.93 -0.25 -4.10 16 22 N -0.24 -2.98 12.32 33.43 0.41 -2.57 16 23 C 0.13 0.64 7.41 -3.65 -0.03 0.61 16 24 C -0.18 -0.46 6.16 -26.34 -0.16 -0.62 16 25 C 0.05 0.18 7.00 37.28 0.26 0.44 16 26 O -0.29 -2.43 10.65 -19.84 -0.21 -2.64 16 27 H 0.04 0.57 7.18 -51.93 -0.37 0.20 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.25 7.18 -51.93 -0.37 0.88 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.38 10.14 6.85 -40.82 -0.28 9.86 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.41 4.98 7.35 -40.82 -0.30 4.68 16 37 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -35.06 360.21 -7.18 -42.23 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.37 Total: 7.06 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.34 Total: 2.49 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.24 Total: -63.09 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.12 Total: -11.77 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.06 -7.18 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753623536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.849 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds