Wall clock time and date at job start Tue Mar 31 2020 09:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37836 * 120.06458 * 2 1 4 4 C 1.38650 * 120.12350 * 180.32053 * 3 2 1 5 5 F 1.35100 * 119.88355 * 179.69975 * 4 3 2 6 6 C 1.38652 * 120.23723 * 359.67582 * 4 3 2 7 7 C 1.37830 * 120.12308 * 0.02627 * 6 4 3 8 8 C 1.50698 * 120.06391 * 180.02562 * 7 6 4 9 9 C 1.39655 * 119.87666 * 359.97438 * 7 6 4 10 10 C 1.47723 * 120.12084 * 180.02562 * 9 7 6 11 11 O 1.21573 * 120.00212 * 89.99735 * 10 9 7 12 12 N 1.34775 * 120.00274 * 270.00041 * 10 9 7 13 13 C 1.46498 * 120.00533 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47281 * 179.97438 * 13 12 10 15 15 H 1.09007 * 109.46691 * 55.00839 * 14 13 12 16 16 C 1.52994 * 109.47313 * 295.00596 * 14 13 12 17 17 C 1.53003 * 109.46790 * 175.00106 * 14 13 12 18 18 N 1.46499 * 109.46708 * 185.00148 * 17 14 13 19 19 C 1.36935 * 119.99926 * 180.02562 * 18 17 14 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47045 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47426 * 119.99572 * 23 21 19 26 26 H 1.48501 * 109.46833 * 239.99815 * 23 21 19 27 27 H 1.09006 * 109.47239 * 270.27694 * 1 2 3 28 28 H 1.09000 * 109.47502 * 30.27842 * 1 2 3 29 29 H 1.08998 * 109.46913 * 150.27811 * 1 2 3 30 30 H 1.08008 * 119.93427 * 0.02562 * 3 2 1 31 31 H 1.08009 * 119.93875 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.47356 * 269.97333 * 8 7 6 33 33 H 1.08994 * 109.46932 * 29.97680 * 8 7 6 34 34 H 1.09005 * 109.46827 * 149.97278 * 8 7 6 35 35 H 0.97002 * 119.99362 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46701 * 60.00421 * 13 12 10 37 37 H 1.08998 * 109.47517 * 300.00740 * 13 12 10 38 38 H 1.09006 * 109.47245 * 179.97438 * 16 14 13 39 39 H 1.09000 * 109.47110 * 299.99807 * 16 14 13 40 40 H 1.08995 * 109.47196 * 59.99903 * 16 14 13 41 41 H 1.08998 * 109.46692 * 65.00650 * 17 14 13 42 42 H 1.08994 * 109.47584 * 305.00514 * 17 14 13 43 43 H 0.97005 * 120.00261 * 0.02562 * 18 17 14 44 44 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1929 0.0000 4 6 3.5840 1.1943 -0.0067 5 9 4.2558 2.3664 -0.0128 6 6 4.2834 -0.0028 -0.0067 7 6 3.6031 -1.2015 -0.0005 8 6 4.3647 -2.5018 0.0001 9 6 2.2066 -1.2087 0.0063 10 6 1.4719 -2.4903 0.0135 11 8 1.1747 -3.0147 1.0692 12 7 1.1311 -3.0783 -1.1504 13 6 0.4030 -4.3495 -1.1433 14 6 0.1418 -4.7956 -2.5833 15 1 1.0855 -4.8384 -3.1273 16 6 -0.7950 -3.7963 -3.2649 17 6 -0.5070 -6.1813 -2.5781 18 7 -0.6480 -6.6596 -3.9556 19 6 -1.2074 -7.8851 -4.2010 20 1 -1.5442 -8.4993 -3.3789 21 6 -1.3461 -8.3360 -5.5064 22 7 -0.9404 -7.5853 -6.5085 23 14 -2.1098 -10.0076 -5.8412 24 1 -2.4806 -10.6491 -4.5543 25 1 -3.3246 -9.8382 -6.6783 26 1 -1.1309 -10.8646 -6.5571 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6574 2.1283 0.0004 31 1 5.3635 0.0039 -0.0115 32 1 4.5437 -2.8186 -1.0274 33 1 5.3184 -2.3640 0.5093 34 1 3.7825 -3.2635 0.5189 35 1 1.3680 -2.6596 -1.9928 36 1 -0.5473 -4.2209 -0.6251 37 1 0.9972 -5.1057 -0.6303 38 1 -0.9808 -4.1140 -4.2910 39 1 -1.7386 -3.7537 -2.7209 40 1 -0.3328 -2.8093 -3.2686 41 1 -1.4905 -6.1201 -2.1123 42 1 0.1191 -6.8736 -2.0154 43 1 -0.3451 -6.1081 -4.6939 44 1 -1.0377 -7.9002 -7.4209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753627273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:49 Heat of formation + Delta-G solvation = -67.426725 kcal Electronic energy + Delta-G solvation = -24781.650792 eV Core-core repulsion = 21033.835676 eV Total energy + Delta-G solvation = -3747.815116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.29033 -40.69223 -38.69318 -36.81478 -34.40289 -34.14664 -32.66595 -31.78873 -30.04318 -28.22904 -27.37012 -26.52302 -25.37634 -23.42137 -22.27809 -21.44380 -20.67895 -19.95018 -17.99583 -17.27879 -17.24852 -16.95301 -16.31301 -15.94888 -15.35865 -15.00702 -14.52941 -14.37783 -14.10638 -13.99281 -13.72265 -13.57733 -13.56155 -13.52915 -13.34585 -13.04109 -12.62857 -12.40273 -12.32496 -12.18511 -12.08372 -11.74707 -11.43591 -11.09323 -10.94827 -10.75213 -10.61212 -10.46860 -10.14575 -9.95915 -9.69920 -9.19251 -9.12772 -9.00569 -8.90339 -6.94548 -5.79267 -3.07689 0.54878 0.76621 2.41761 2.90839 3.16570 3.42088 3.48177 3.50136 3.75813 4.21237 4.23870 4.49591 4.57430 4.62740 4.86722 4.99874 5.04981 5.07765 5.17051 5.25748 5.27789 5.29068 5.33838 5.38061 5.55692 5.63286 5.70362 5.76966 5.80465 5.85355 5.91836 5.94411 6.00968 6.07176 6.20018 6.34432 6.39781 6.42057 6.61950 6.73963 6.83128 7.36028 7.69090 8.04134 8.39842 9.51278 10.08329 10.42970 11.43773 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.002368 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.831221 B =11822.248072 C =11868.631356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.016 4.016 3 C -0.164 4.164 4 C 0.121 3.879 5 F -0.137 7.137 6 C -0.164 4.164 7 C -0.015 4.015 8 C -0.126 4.126 9 C -0.139 4.139 10 C 0.566 3.434 11 O -0.532 6.532 12 N -0.716 5.716 13 C 0.125 3.875 14 C -0.110 4.110 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 19.423 12.875 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.183 4.183 4 C 0.102 3.898 5 F -0.115 7.115 6 C -0.183 4.183 7 C -0.016 4.016 8 C -0.182 4.182 9 C -0.143 4.143 10 C 0.351 3.649 11 O -0.408 6.408 12 N -0.367 5.367 13 C 0.001 3.999 14 C -0.130 4.130 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.033 3.967 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.218 0.782 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.820 18.889 13.663 24.925 hybrid contribution -0.010 -0.227 -0.941 0.968 sum 8.809 18.661 12.722 24.242 Atomic orbital electron populations 1.20937 0.89761 1.03773 1.03579 1.19707 0.96517 0.90697 0.94733 1.20908 0.92155 0.99168 1.06056 1.17804 0.90103 0.81179 1.00742 1.91517 1.80494 1.45886 1.93624 1.20916 1.00973 0.90366 1.06018 1.19711 0.91721 0.95515 0.94655 1.20954 1.00284 0.93496 1.03503 1.19785 0.93451 0.93479 1.07562 1.18069 0.78670 0.83934 0.84225 1.90829 1.54415 1.64645 1.30939 1.46148 1.57854 1.24442 1.08285 1.21483 0.96522 0.84066 0.97790 1.21556 1.00274 0.97329 0.93793 0.90478 1.21795 0.98882 0.97030 1.02219 1.20571 0.96783 0.90428 0.88961 1.42346 1.74210 1.19818 1.01178 1.19279 1.31793 0.93878 0.91963 0.91099 1.24738 1.02050 0.98697 0.95578 1.69663 1.53035 1.37366 0.98238 0.86111 0.78528 0.83773 0.77763 1.20536 1.21873 1.21875 0.89931 0.90443 0.90733 0.84139 0.84129 0.89860 0.90479 0.90542 0.76264 0.91139 0.91132 0.91102 0.92778 0.93918 0.95988 0.96117 0.78207 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.62 36.00 0.35 -0.66 16 2 C -0.02 -0.15 5.91 -104.24 -0.62 -0.76 16 3 C -0.16 -1.40 9.67 -39.58 -0.38 -1.78 16 4 C 0.12 1.10 7.31 -39.28 -0.29 0.82 16 5 F -0.14 -1.30 17.26 2.25 0.04 -1.26 16 6 C -0.16 -1.41 9.66 -39.58 -0.38 -1.79 16 7 C -0.02 -0.14 5.91 -104.24 -0.62 -0.76 16 8 C -0.13 -1.04 9.62 36.00 0.35 -0.69 16 9 C -0.14 -1.48 5.63 -104.96 -0.59 -2.07 16 10 C 0.57 7.03 4.18 -12.39 -0.05 6.98 16 11 O -0.53 -8.58 17.10 5.30 0.09 -8.49 16 12 N -0.72 -7.95 5.28 -61.29 -0.32 -8.27 16 13 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 14 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 15 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 16 C -0.14 -1.99 8.94 37.15 0.33 -1.66 16 17 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 18 N -0.73 -17.94 5.33 -59.91 -0.32 -18.25 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.07 0.67 7.08 -51.93 -0.37 0.30 16 30 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.08 0.77 7.08 -51.93 -0.37 0.40 16 35 H 0.40 3.77 7.64 -40.82 -0.31 3.46 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -32.16 370.58 -8.33 -40.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.69 Total: 6.91 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.42 Total: -6.82 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.08 Total: -53.65 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.16 -8.33 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753627273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.933 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds