Wall clock time and date at job start Tue Mar 31 2020 09:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47028 * 2 1 4 4 N 1.46901 * 109.46945 * 240.00620 * 2 1 3 5 5 C 1.46901 * 111.00155 * 84.99879 * 4 2 1 6 6 C 1.53005 * 109.47096 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46604 * 304.99290 * 6 5 4 8 8 C 1.47193 * 109.47445 * 64.99482 * 6 5 4 9 9 N 4.90936 * 82.27613 * 240.86781 * 2 1 3 10 10 C 1.52998 * 109.46852 * 185.00007 * 6 5 4 11 11 C 1.50699 * 109.47084 * 174.99509 * 10 6 5 12 12 H 1.08008 * 120.00150 * 359.97438 * 11 10 6 13 13 C 1.37871 * 120.00210 * 179.97438 * 11 10 6 14 14 N 1.31517 * 120.00417 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00057 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46871 * 89.99659 * 15 13 11 17 17 H 1.48502 * 109.47173 * 209.99526 * 15 13 11 18 18 H 1.48497 * 109.46961 * 330.00066 * 15 13 11 19 19 C 1.50698 * 109.47378 * 120.00524 * 2 1 3 20 20 C 1.36122 * 120.17335 * 100.00217 * 19 2 1 21 21 C 1.39329 * 120.99059 * 179.97438 * 20 19 2 22 22 C 1.36135 * 120.98917 * 0.02562 * 21 20 19 23 23 C 1.40496 * 119.64918 * 359.97438 * 22 21 20 24 24 C 1.40549 * 121.28759 * 180.02562 * 23 22 21 25 25 C 1.36094 * 119.65575 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.99110 * 0.02874 * 25 24 23 27 27 C 1.36095 * 120.99632 * 359.95136 * 26 25 24 28 28 C 1.40498 * 120.17148 * 279.97430 * 19 2 1 29 29 H 1.09006 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47119 * 299.99580 * 1 2 3 31 31 H 1.09001 * 109.47708 * 59.99592 * 1 2 3 32 32 H 1.00900 * 111.00171 * 321.04099 * 4 2 1 33 33 H 1.09007 * 109.46946 * 299.99868 * 5 4 2 34 34 H 1.09000 * 109.47379 * 59.99828 * 5 4 2 35 35 H 1.09005 * 109.47053 * 294.99439 * 10 6 5 36 36 H 1.08999 * 109.47438 * 54.99331 * 10 6 5 37 37 H 0.97000 * 120.00576 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.50985 * 359.97438 * 20 19 2 39 39 H 1.07998 * 119.50932 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.17200 * 179.70094 * 22 21 20 41 41 H 1.08001 * 120.17178 * 359.93364 * 24 23 22 42 42 H 1.07990 * 119.50654 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.50208 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.17244 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3469 6 6 2.5949 -0.5329 -3.5746 7 1 3.5505 -1.0016 -3.3398 8 6 1.6208 -1.5686 -3.9554 9 7 0.8701 -2.3683 -4.2494 10 6 2.7787 0.4460 -4.7360 11 6 3.3986 -0.2734 -5.9061 12 1 3.6380 -1.3238 -5.8289 13 6 3.6603 0.4091 -7.0750 14 7 4.2008 -0.2188 -8.0964 15 14 3.2470 2.2260 -7.2083 16 1 4.4136 3.0325 -6.7680 17 1 2.9201 2.5572 -8.6185 18 1 2.0789 2.5326 -6.3441 19 6 2.0324 -0.7105 1.2304 20 6 2.4531 -2.0026 1.1504 21 6 2.9213 -2.6756 2.2769 22 6 2.9711 -2.0607 3.4905 23 6 2.5452 -0.7274 3.6121 24 6 2.5822 -0.0592 4.8480 25 6 2.1620 1.2328 4.9277 26 6 1.6936 1.9060 3.8008 27 6 1.6437 1.2914 2.5876 28 6 2.0694 -0.0425 2.4658 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.4495 -1.4978 -1.4102 33 1 1.0869 0.6165 -2.5525 34 1 2.7587 1.0464 -2.1182 35 1 1.8089 0.8483 -5.0291 36 1 3.4310 1.2616 -4.4239 37 1 4.3846 0.2613 -8.9190 38 1 2.4237 -2.5138 0.1995 39 1 3.2497 -3.7004 2.1861 40 1 3.3319 -2.5965 4.3560 41 1 2.9416 -0.5685 5.7299 42 1 2.1911 1.7438 5.8786 43 1 1.3656 2.9310 3.8916 44 1 1.2787 1.8258 1.7230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023676632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:11 Heat of formation + Delta-G solvation = 58.775082 kcal Electronic energy + Delta-G solvation = -23886.753823 eV Core-core repulsion = 20575.180452 eV Total energy + Delta-G solvation = -3311.573371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72137 -38.10502 -36.72219 -35.76271 -34.03182 -32.89458 -31.70697 -30.48142 -29.71092 -28.81682 -26.66767 -24.08898 -23.34443 -23.11785 -22.39294 -21.53499 -20.24504 -17.56502 -17.37810 -16.93552 -16.72664 -16.40466 -15.56128 -15.15507 -14.56898 -14.36744 -14.15126 -13.94307 -13.80815 -13.52910 -13.38214 -13.13979 -12.98573 -12.83771 -12.57897 -12.39809 -12.20597 -12.01865 -11.94313 -11.65501 -11.44306 -11.34792 -11.19615 -10.99637 -10.88263 -10.71255 -10.44590 -9.98617 -9.91154 -9.77664 -9.34382 -8.72569 -8.62990 -8.48049 -7.94767 -6.11749 -4.12556 0.40046 0.90493 1.91859 2.88822 3.24846 3.33636 3.34008 3.49968 3.54302 3.94759 4.05006 4.37031 4.41379 4.64738 4.68235 4.70346 4.79472 4.88430 4.99992 5.01250 5.04983 5.21745 5.22771 5.27037 5.37425 5.39568 5.46246 5.51788 5.64095 5.68157 5.82871 5.94306 5.98241 5.99819 6.09797 6.14286 6.15863 6.29023 6.33667 6.44125 6.54695 6.69337 6.90165 6.91085 6.99799 7.11938 7.28883 7.62227 8.30897 8.40945 8.91706 9.47971 11.01363 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002849 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.654208 B = 9826.634161 C =10411.818299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.092 0.908 4 N -0.684 5.684 5 C 0.065 3.935 6 C 0.017 3.983 7 H 0.117 0.883 8 C 0.238 3.762 9 N -0.467 5.467 10 C -0.004 4.004 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.057 4.057 20 C -0.095 4.095 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.052 4.052 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.044 4.044 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 3.434 27.296 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.011 3.989 3 H 0.110 0.890 4 N -0.314 5.314 5 C -0.065 4.065 6 C -0.005 4.005 7 H 0.135 0.865 8 C -0.079 4.079 9 N -0.144 5.144 10 C -0.043 4.043 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.058 4.058 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.052 4.052 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.124 4.124 28 C -0.045 4.045 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.823 2.325 26.807 27.337 hybrid contribution -0.706 1.281 -0.424 1.523 sum -5.529 3.607 26.383 27.196 Atomic orbital electron populations 1.22512 0.96050 1.02748 1.02587 1.20382 0.92700 0.97683 0.88111 0.88964 1.60639 1.57152 1.09940 1.03687 1.22153 1.00417 0.95337 0.88603 1.19065 0.94509 0.91616 0.95326 0.86541 1.29138 0.93379 0.93466 0.91931 1.81037 1.11987 1.11651 1.09742 1.19626 0.97791 0.94332 0.92536 1.21027 1.41207 0.98169 0.96187 0.90783 1.24995 0.94335 0.98248 0.95559 1.69905 1.42989 1.36688 1.03913 0.86816 0.79430 0.85755 0.77539 1.19969 1.21346 1.18910 1.19605 0.98780 0.94494 0.92880 1.20770 0.97423 0.94383 0.98732 1.20924 0.99068 1.00094 0.92720 1.20977 1.00793 0.93766 0.98041 1.18042 0.99714 0.94314 0.93151 1.21007 0.99981 0.95048 0.96461 1.20818 0.99552 0.94981 0.98586 1.20834 1.00187 1.00019 0.92877 1.21091 0.99428 0.93845 0.97990 1.17898 0.99753 0.94072 0.92749 0.92162 0.91716 0.91899 0.83960 0.94445 0.88942 0.95853 0.94695 0.92552 0.85055 0.86027 0.85921 0.85840 0.86258 0.86172 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.01 37.16 0.33 -1.41 16 2 C 0.12 1.27 2.14 -68.87 -0.15 1.13 16 3 H 0.09 0.92 6.65 -51.93 -0.35 0.58 16 4 N -0.68 -8.21 5.07 -107.95 -0.55 -8.76 16 5 C 0.06 0.85 4.92 -3.82 -0.02 0.83 16 6 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 7 H 0.12 1.97 8.14 -51.93 -0.42 1.54 16 8 C 0.24 4.62 12.97 -20.78 -0.27 4.35 16 9 N -0.47 -9.95 18.53 42.13 0.78 -9.17 16 10 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 11 C -0.53 -14.11 9.15 -34.44 -0.32 -14.43 16 12 H 0.07 2.18 7.84 -52.48 -0.41 1.77 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 15 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 19 C -0.06 -0.64 5.09 -104.53 -0.53 -1.17 16 20 C -0.09 -1.06 9.26 -39.94 -0.37 -1.43 16 21 C -0.11 -1.10 9.95 -39.93 -0.40 -1.50 16 22 C -0.12 -1.14 9.77 -39.49 -0.39 -1.52 16 23 C -0.05 -0.55 5.74 -106.83 -0.61 -1.17 16 24 C -0.11 -0.95 9.77 -39.48 -0.39 -1.33 16 25 C -0.12 -0.99 9.95 -39.93 -0.40 -1.39 16 26 C -0.12 -1.03 9.95 -39.93 -0.40 -1.43 16 27 C -0.11 -1.01 8.73 -39.48 -0.34 -1.36 16 28 C -0.04 -0.49 5.74 -106.83 -0.61 -1.10 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.57 7.23 -51.93 -0.38 0.19 16 31 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 32 H 0.34 4.26 7.07 -39.29 -0.28 3.99 16 33 H 0.04 0.48 7.43 -51.93 -0.39 0.09 16 34 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 35 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 36 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 1.47 6.76 -52.49 -0.36 1.11 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.13 1.03 6.18 -52.49 -0.32 0.71 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -31.40 363.61 -9.63 -41.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.17 Total: 2.98 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -5.27 Total: -21.16 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 1.01 Total: -44.17 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.40 -9.63 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023676632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.808 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds