Wall clock time and date at job start Tue Mar 31 2020 09:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47028 * 2 1 4 4 N 1.46901 * 109.46945 * 240.00620 * 2 1 3 5 5 C 1.46901 * 111.00155 * 84.99879 * 4 2 1 6 6 C 1.53005 * 109.47096 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46604 * 304.99290 * 6 5 4 8 8 C 1.47193 * 109.47445 * 64.99482 * 6 5 4 9 9 N 4.90936 * 82.27613 * 240.86781 * 2 1 3 10 10 C 1.52998 * 109.46852 * 185.00007 * 6 5 4 11 11 C 1.50699 * 109.47084 * 174.99509 * 10 6 5 12 12 H 1.08008 * 120.00150 * 359.97438 * 11 10 6 13 13 C 1.37871 * 120.00210 * 179.97438 * 11 10 6 14 14 N 1.31517 * 120.00417 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00057 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46871 * 89.99659 * 15 13 11 17 17 H 1.48502 * 109.47173 * 209.99526 * 15 13 11 18 18 H 1.48497 * 109.46961 * 330.00066 * 15 13 11 19 19 C 1.50698 * 109.47378 * 120.00524 * 2 1 3 20 20 C 1.36122 * 120.17335 * 100.00217 * 19 2 1 21 21 C 1.39329 * 120.99059 * 179.97438 * 20 19 2 22 22 C 1.36135 * 120.98917 * 0.02562 * 21 20 19 23 23 C 1.40496 * 119.64918 * 359.97438 * 22 21 20 24 24 C 1.40549 * 121.28759 * 180.02562 * 23 22 21 25 25 C 1.36094 * 119.65575 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.99110 * 0.02874 * 25 24 23 27 27 C 1.36095 * 120.99632 * 359.95136 * 26 25 24 28 28 C 1.40498 * 120.17148 * 279.97430 * 19 2 1 29 29 H 1.09006 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47119 * 299.99580 * 1 2 3 31 31 H 1.09001 * 109.47708 * 59.99592 * 1 2 3 32 32 H 1.00900 * 111.00171 * 321.04099 * 4 2 1 33 33 H 1.09007 * 109.46946 * 299.99868 * 5 4 2 34 34 H 1.09000 * 109.47379 * 59.99828 * 5 4 2 35 35 H 1.09005 * 109.47053 * 294.99439 * 10 6 5 36 36 H 1.08999 * 109.47438 * 54.99331 * 10 6 5 37 37 H 0.97000 * 120.00576 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.50985 * 359.97438 * 20 19 2 39 39 H 1.07998 * 119.50932 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.17200 * 179.70094 * 22 21 20 41 41 H 1.08001 * 120.17178 * 359.93364 * 24 23 22 42 42 H 1.07990 * 119.50654 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.50208 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.17244 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3469 6 6 2.5949 -0.5329 -3.5746 7 1 3.5505 -1.0016 -3.3398 8 6 1.6208 -1.5686 -3.9554 9 7 0.8701 -2.3683 -4.2494 10 6 2.7787 0.4460 -4.7360 11 6 3.3986 -0.2734 -5.9061 12 1 3.6380 -1.3238 -5.8289 13 6 3.6603 0.4091 -7.0750 14 7 4.2008 -0.2188 -8.0964 15 14 3.2470 2.2260 -7.2083 16 1 4.4136 3.0325 -6.7680 17 1 2.9201 2.5572 -8.6185 18 1 2.0789 2.5326 -6.3441 19 6 2.0324 -0.7105 1.2304 20 6 2.4531 -2.0026 1.1504 21 6 2.9213 -2.6756 2.2769 22 6 2.9711 -2.0607 3.4905 23 6 2.5452 -0.7274 3.6121 24 6 2.5822 -0.0592 4.8480 25 6 2.1620 1.2328 4.9277 26 6 1.6936 1.9060 3.8008 27 6 1.6437 1.2914 2.5876 28 6 2.0694 -0.0425 2.4658 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.4495 -1.4978 -1.4102 33 1 1.0869 0.6165 -2.5525 34 1 2.7587 1.0464 -2.1182 35 1 1.8089 0.8483 -5.0291 36 1 3.4310 1.2616 -4.4239 37 1 4.3846 0.2613 -8.9190 38 1 2.4237 -2.5138 0.1995 39 1 3.2497 -3.7004 2.1861 40 1 3.3319 -2.5965 4.3560 41 1 2.9416 -0.5685 5.7299 42 1 2.1911 1.7438 5.8786 43 1 1.3656 2.9310 3.8916 44 1 1.2787 1.8258 1.7230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023676632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:11 Heat of formation + Delta-G solvation = 42.106868 kcal Electronic energy + Delta-G solvation = -23887.476611 eV Core-core repulsion = 20575.180452 eV Total energy + Delta-G solvation = -3312.296159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42983 -39.19932 -37.77080 -36.74406 -35.61242 -34.36023 -32.99851 -31.20035 -30.74317 -29.58143 -28.19676 -24.99055 -24.29832 -23.82564 -23.35164 -23.20502 -21.03674 -18.96877 -18.38082 -18.24104 -17.84541 -17.19034 -16.69022 -16.23582 -15.81300 -15.35463 -15.13838 -14.93939 -14.75578 -14.59067 -14.52061 -14.27885 -14.10069 -14.07295 -13.75156 -13.57980 -13.44649 -13.15873 -13.05562 -12.69968 -12.54595 -12.44651 -12.36555 -12.12245 -12.05259 -11.75851 -11.66820 -11.60860 -11.36173 -11.23817 -10.72600 -10.63372 -9.46161 -9.38857 -8.65142 -8.24282 -6.30001 -0.29055 0.19063 1.20908 1.43231 1.45762 1.55996 1.94039 1.95462 2.19584 2.41484 3.05743 3.11737 3.23046 3.27355 3.69355 3.98035 4.03315 4.07047 4.14065 4.23526 4.26509 4.30493 4.38155 4.41317 4.55538 4.58076 4.61873 4.70886 4.79151 4.81120 4.92228 4.95475 4.99138 5.14348 5.20952 5.24903 5.32031 5.41470 5.46164 5.47628 5.60988 5.64341 5.70572 5.79136 6.02050 6.11076 6.21219 6.26609 6.30158 6.74361 6.80580 7.34507 8.92763 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002849 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.654208 B = 9826.634161 C =10411.818299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.126 3.874 3 H 0.103 0.897 4 N -0.687 5.687 5 C 0.076 3.924 6 C 0.024 3.976 7 H 0.118 0.882 8 C 0.249 3.751 9 N -0.505 5.505 10 C -0.002 4.002 11 C -0.531 4.531 12 H 0.028 0.972 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.950 3.050 16 H -0.257 1.257 17 H -0.296 1.296 18 H -0.236 1.236 19 C -0.067 4.067 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.073 4.073 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.062 4.062 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.337 0.663 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.028 0.972 36 H 0.063 0.937 37 H 0.264 0.736 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 6.302 30.045 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 H 0.121 0.879 4 N -0.318 5.318 5 C -0.054 4.054 6 C 0.002 3.998 7 H 0.135 0.865 8 C -0.068 4.068 9 N -0.183 5.183 10 C -0.041 4.041 11 C -0.569 4.569 12 H 0.046 0.954 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.773 3.227 16 H -0.182 1.182 17 H -0.223 1.223 18 H -0.158 1.158 19 C -0.067 4.067 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.073 4.073 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.063 4.063 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.385 5.192 29.598 30.528 hybrid contribution -0.498 0.295 -1.199 1.331 sum -5.882 5.486 28.399 29.516 Atomic orbital electron populations 1.22448 0.95472 1.02264 1.03116 1.20381 0.93075 0.97806 0.87052 0.87938 1.60597 1.57540 1.09799 1.03836 1.22053 1.01238 0.95125 0.87006 1.19099 0.94257 0.90560 0.95908 0.86452 1.29682 0.92949 0.93225 0.90899 1.81034 1.13516 1.12788 1.10934 1.19576 0.97783 0.95209 0.91525 1.21412 1.40524 0.96601 0.98367 0.95404 1.26064 0.94336 1.04028 0.95092 1.70094 1.45477 1.39149 1.04888 0.85670 0.80672 0.78918 0.77489 1.18183 1.22296 1.15849 1.19695 0.99134 0.94551 0.93346 1.20850 0.98465 0.94846 0.98916 1.21116 0.99480 1.00866 0.92747 1.21265 1.00137 0.93769 0.98569 1.18374 1.00149 0.94890 0.93917 1.21300 0.99960 0.95562 0.96517 1.21187 0.98502 0.94854 0.99651 1.21189 0.99200 1.01064 0.92534 1.21274 0.99977 0.93469 0.99047 1.18119 1.00401 0.94949 0.92820 0.93183 0.90738 0.91700 0.84498 0.93513 0.86760 0.95365 0.91865 0.92683 0.85855 0.84731 0.83788 0.83840 0.83765 0.83925 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.01 71.98 0.65 -2.47 16 2 C 0.13 2.45 2.14 44.17 0.09 2.55 16 3 H 0.10 1.78 6.65 -2.39 -0.02 1.76 16 4 N -0.69 -15.61 5.07 -495.44 -2.51 -18.12 16 5 C 0.08 1.79 4.92 86.30 0.42 2.21 16 6 C 0.02 0.78 2.42 -12.60 -0.03 0.75 16 7 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 8 C 0.25 9.67 12.97 89.45 1.16 10.83 16 9 N -0.51 -21.84 18.53 20.00 0.37 -21.47 16 10 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 11 C -0.53 -28.67 9.15 25.60 0.23 -28.43 16 12 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 13 C 0.00 0.07 5.47 84.65 0.46 0.53 16 14 N -0.96 -59.37 13.96 21.45 0.30 -59.07 16 15 Si 0.95 41.33 27.47 68.60 1.88 43.22 16 16 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 17 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 19 C -0.07 -1.44 5.09 -19.81 -0.10 -1.54 16 20 C -0.11 -2.53 9.26 22.04 0.20 -2.32 16 21 C -0.12 -2.46 9.95 22.04 0.22 -2.24 16 22 C -0.12 -2.19 9.77 22.33 0.22 -1.97 16 23 C -0.07 -1.45 5.74 -21.30 -0.12 -1.58 16 24 C -0.12 -1.79 9.77 22.33 0.22 -1.57 16 25 C -0.12 -1.68 9.95 22.05 0.22 -1.46 16 26 C -0.12 -1.73 9.95 22.05 0.22 -1.51 16 27 C -0.12 -2.05 8.73 22.34 0.19 -1.85 16 28 C -0.06 -1.30 5.74 -21.30 -0.12 -1.43 16 29 H 0.05 0.99 8.13 -2.38 -0.02 0.97 16 30 H 0.07 1.18 7.23 -2.39 -0.02 1.16 16 31 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 32 H 0.34 8.26 7.07 -89.69 -0.63 7.63 16 33 H 0.05 1.05 7.43 -2.38 -0.02 1.03 16 34 H 0.11 2.27 8.06 -2.39 -0.02 2.25 16 35 H 0.03 1.12 7.20 -2.38 -0.02 1.10 16 36 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 38 H 0.12 2.85 6.76 -2.91 -0.02 2.83 16 39 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.16 8.06 -2.92 -0.02 1.14 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.91 6.18 -2.91 -0.02 1.89 16 Total: -1.00 -70.28 363.61 4.61 -65.67 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.32 Total: 21.25 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.25 Total: -31.47 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -1.84 Total: -98.66 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.22 kcal Total: -70.28 4.61 -65.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023676632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.775 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds