Wall clock time and date at job start Tue Mar 31 2020 09:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47031 * 2 1 4 4 C 1.34777 * 119.99762 * 276.78185 * 3 2 1 5 5 O 1.21286 * 120.00057 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00397 * 359.97438 * 4 3 2 7 7 N 1.46499 * 109.47303 * 180.02562 * 6 4 3 8 8 C 1.46496 * 120.00018 * 90.00370 * 7 6 4 9 9 C 1.36932 * 119.99993 * 269.99717 * 7 6 4 10 10 H 1.08002 * 120.00083 * 23.12959 * 9 7 6 11 11 C 1.38816 * 120.00453 * 203.12370 * 9 7 6 12 12 N 1.31617 * 119.99429 * 10.90762 * 11 9 7 13 13 Si 1.86797 * 120.00351 * 190.90571 * 11 9 7 14 14 H 1.48497 * 109.47083 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47041 * 120.00041 * 13 11 9 16 16 H 1.48504 * 109.46764 * 240.00111 * 13 11 9 17 17 C 1.46497 * 119.99991 * 96.78167 * 3 2 1 18 18 H 1.09009 * 109.46985 * 199.28316 * 17 3 2 19 19 C 1.52996 * 109.47099 * 319.28086 * 17 3 2 20 20 C 1.50701 * 109.47121 * 79.28690 * 17 3 2 21 21 C 1.38239 * 119.97480 * 134.35070 * 20 17 3 22 22 C 1.38196 * 120.02697 * 179.97438 * 21 20 17 23 23 C 1.38467 * 119.97255 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.02356 * 179.97438 * 23 22 21 25 25 C 1.38454 * 119.94499 * 0.24601 * 23 22 21 26 26 C 1.38196 * 119.97718 * 359.51903 * 25 23 22 27 27 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46990 * 299.99681 * 1 2 3 29 29 H 1.08992 * 109.47443 * 60.00399 * 1 2 3 30 30 H 1.09004 * 109.46857 * 239.99924 * 2 1 3 31 31 H 1.08994 * 109.47388 * 120.00139 * 2 1 3 32 32 H 1.08998 * 109.47014 * 299.99857 * 6 4 3 33 33 H 1.08997 * 109.46959 * 59.99854 * 6 4 3 34 34 H 1.08996 * 109.47606 * 86.81133 * 8 7 6 35 35 H 1.09007 * 109.47103 * 206.81551 * 8 7 6 36 36 H 1.09002 * 109.46965 * 326.81127 * 8 7 6 37 37 H 0.97001 * 120.00196 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.47147 * 60.00397 * 19 17 3 39 39 H 1.09001 * 109.46977 * 180.02562 * 19 17 3 40 40 H 1.09001 * 109.47691 * 300.00041 * 19 17 3 41 41 H 1.08004 * 119.99095 * 0.02562 * 21 20 17 42 42 H 1.08004 * 120.01596 * 180.02562 * 22 21 20 43 43 H 1.08010 * 120.00754 * 179.74718 * 25 23 22 44 44 H 1.08005 * 119.98980 * 180.25098 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1129 2.0625 -1.1591 5 8 2.5168 3.2061 -1.1591 6 6 1.7170 1.4033 -2.4551 7 7 1.9108 2.3445 -3.5609 8 6 3.1956 2.3951 -4.2631 9 6 0.8911 3.1768 -3.9382 10 1 0.1073 3.4228 -3.2371 11 6 0.8648 3.7047 -5.2218 12 7 1.6886 3.2448 -6.1394 13 14 -0.3399 5.0676 -5.6468 14 1 -1.1502 5.4034 -4.4486 15 1 0.4097 6.2700 -6.0910 16 1 -1.2373 4.6122 -6.7389 17 6 2.4037 2.0219 1.2598 18 1 2.4076 3.1043 1.1307 19 6 1.4022 1.6422 2.3523 20 6 3.7813 1.5586 1.6581 21 6 4.7208 2.4764 2.0894 22 6 5.9843 2.0528 2.4554 23 6 6.3092 0.7084 2.3894 24 9 7.5442 0.2931 2.7465 25 6 5.3692 -0.2092 1.9519 26 6 4.1048 0.2163 1.5911 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3353 0.5204 -2.6174 33 1 0.6687 1.1089 -2.4076 34 1 3.2005 1.6573 -5.0654 35 1 3.3408 3.3902 -4.6837 36 1 4.0013 2.1755 -3.5626 37 1 1.6706 3.6138 -7.0363 38 1 1.3983 0.5599 2.4815 39 1 1.6887 2.1192 3.2896 40 1 0.4057 1.9773 2.0643 41 1 4.4670 3.5250 2.1412 42 1 6.7180 2.7699 2.7928 43 1 5.6228 -1.2576 1.8962 44 1 3.3701 -0.4999 1.2536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:38 Heat of formation + Delta-G solvation = -37.881087 kcal Electronic energy + Delta-G solvation = -26077.235027 eV Core-core repulsion = 22330.701106 eV Total energy + Delta-G solvation = -3746.533921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91215 -41.37407 -39.79717 -37.52170 -36.82406 -34.00974 -33.07738 -32.12062 -30.93083 -30.02317 -28.74590 -27.87520 -25.01933 -24.58543 -23.68090 -23.40491 -21.88051 -19.99425 -18.81501 -18.61025 -18.18616 -17.35354 -17.25474 -16.83871 -16.61309 -16.41329 -15.88327 -15.48719 -15.23412 -14.90557 -14.83016 -14.55637 -14.50607 -14.27106 -13.96967 -13.76151 -13.40257 -13.38740 -13.24091 -13.03499 -12.82527 -12.79753 -12.60941 -12.46172 -12.28952 -12.07724 -12.00512 -11.91584 -11.85019 -11.51401 -10.85573 -10.51132 -10.08073 -9.65224 -9.51908 -8.79723 -7.87255 -5.33366 0.10222 0.26165 1.43295 1.46228 1.56246 1.87828 2.08927 2.49988 2.64340 3.26365 3.29679 3.64478 3.68156 3.71337 3.90443 3.95701 4.05346 4.23164 4.31205 4.35483 4.39626 4.47804 4.58957 4.65746 4.70045 4.73554 4.79398 4.91441 4.99999 5.00931 5.04753 5.08985 5.14484 5.24432 5.28897 5.30947 5.51415 5.52398 5.55288 5.64687 5.82295 5.90336 6.27950 6.54756 7.10811 7.45894 7.81686 8.23976 9.18686 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.003677 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.633035 B = 7613.101286 C = 8195.565553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 N -0.606 5.606 4 C 0.484 3.516 5 O -0.577 6.577 6 C 0.134 3.866 7 N -0.598 5.598 8 C 0.184 3.816 9 C -0.255 4.255 10 H 0.060 0.940 11 C -0.050 4.050 12 N -0.937 5.937 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.282 1.282 17 C 0.174 3.826 18 H 0.071 0.929 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.092 4.092 22 C -0.157 4.157 23 C 0.075 3.925 24 F -0.149 7.149 25 C -0.151 4.151 26 C -0.087 4.087 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.010 0.990 35 H 0.025 0.975 36 H 0.008 0.992 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -11.398 20.832 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.340 5.340 4 C 0.271 3.729 5 O -0.455 6.455 6 C 0.004 3.996 7 N -0.319 5.319 8 C 0.039 3.961 9 C -0.385 4.385 10 H 0.078 0.922 11 C -0.245 4.245 12 N -0.583 5.583 13 Si 0.797 3.203 14 H -0.196 1.196 15 H -0.220 1.220 16 H -0.209 1.209 17 C 0.071 3.929 18 H 0.089 0.911 19 C -0.203 4.203 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.176 4.176 23 C 0.055 3.945 24 F -0.128 7.128 25 C -0.170 4.170 26 C -0.105 4.105 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.281 -10.762 20.638 23.387 hybrid contribution 0.059 1.191 -0.557 1.316 sum 2.340 -9.571 20.081 22.368 Atomic orbital electron populations 1.22334 0.95149 1.03578 1.02161 1.22009 0.95220 0.81033 1.04615 1.48371 1.65267 1.15135 1.05257 1.22981 0.76216 0.86580 0.87125 1.90605 1.47310 1.20366 1.87218 1.20977 1.01949 0.92083 0.84582 1.43755 1.10882 1.42157 1.35069 1.20478 0.84165 0.99195 0.92305 1.19387 1.02979 1.21653 0.94516 0.92205 1.25715 1.00918 1.02430 0.95387 1.70212 1.41371 1.44061 1.02686 0.85184 0.78434 0.78875 0.77817 1.19610 1.22020 1.20882 1.19851 0.90833 0.97704 0.84554 0.91099 1.22127 0.97727 1.03547 0.96875 1.20421 0.96445 0.94386 0.99363 1.21071 0.92256 1.00325 0.97432 1.21287 0.98336 0.94536 1.03404 1.17972 0.80702 0.93716 1.02068 1.91470 1.40509 1.90988 1.89791 1.21402 0.93318 1.00815 1.01445 1.21360 0.96379 0.95466 0.97287 0.89067 0.91721 0.94142 0.89635 0.87095 0.89104 0.88981 0.97164 0.95633 0.97362 0.94089 0.89756 0.90346 0.91789 0.84816 0.83626 0.82583 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.99 71.98 0.72 -2.11 16 2 C 0.09 1.58 4.26 86.38 0.37 1.95 16 3 N -0.61 -16.05 2.26 -802.01 -1.81 -17.86 16 4 C 0.48 18.74 7.69 87.66 0.67 19.41 16 5 O -0.58 -28.61 15.86 -3.05 -0.05 -28.66 16 6 C 0.13 5.37 4.77 85.63 0.41 5.78 16 7 N -0.60 -31.61 2.41 -731.32 -1.76 -33.37 16 8 C 0.18 9.82 8.99 127.77 1.15 10.97 16 9 C -0.26 -14.74 9.66 84.04 0.81 -13.93 16 10 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 11 C -0.05 -2.89 5.09 84.86 0.43 -2.46 16 12 N -0.94 -56.68 10.65 21.65 0.23 -56.45 16 13 Si 0.97 46.88 29.57 68.60 2.03 48.90 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 C 0.17 4.19 2.81 44.24 0.12 4.31 16 18 H 0.07 2.18 6.93 -2.38 -0.02 2.17 16 19 C -0.15 -2.33 7.92 71.98 0.57 -1.76 16 20 C -0.10 -2.35 4.95 -19.86 -0.10 -2.45 16 21 C -0.09 -2.12 9.66 22.26 0.22 -1.91 16 22 C -0.16 -3.41 10.03 22.31 0.22 -3.19 16 23 C 0.07 1.64 7.30 22.38 0.16 1.80 16 24 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 25 C -0.15 -2.83 10.03 22.31 0.22 -2.60 16 26 C -0.09 -1.62 9.08 22.26 0.20 -1.42 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.99 6.24 -2.39 -0.01 0.98 16 29 H 0.04 0.89 6.41 -2.39 -0.02 0.87 16 30 H 0.09 1.41 6.73 -2.38 -0.02 1.39 16 31 H 0.11 1.19 4.31 -2.39 -0.01 1.18 16 32 H 0.09 3.11 7.35 -2.39 -0.02 3.10 16 33 H 0.09 3.41 6.27 -2.39 -0.01 3.40 16 34 H 0.01 0.55 7.81 -2.39 -0.02 0.53 16 35 H 0.02 1.50 6.71 -2.38 -0.02 1.48 16 36 H 0.01 0.39 8.10 -2.39 -0.02 0.37 16 37 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.08 0.98 6.65 -2.39 -0.02 0.96 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.09 7.17 -2.39 -0.02 1.07 16 41 H 0.13 2.93 8.00 -2.91 -0.02 2.91 16 42 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.16 2.11 4.55 -2.91 -0.01 2.10 16 Total: -1.00 -75.83 353.35 6.61 -69.22 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.01 Total: 8.49 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.19 Total: 12.40 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -3.34 Total: -107.69 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.83 6.61 -69.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.334 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds