Wall clock time and date at job start Tue Mar 31 2020 09:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47554 * 2 1 4 4 C 1.46899 * 110.99947 * 299.25032 * 3 2 1 5 5 C 1.50698 * 109.47414 * 289.50083 * 4 3 2 6 6 H 1.08005 * 119.99638 * 4.96786 * 5 4 3 7 7 C 1.37868 * 120.00293 * 184.97256 * 5 4 3 8 8 N 1.31513 * 120.00233 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47425 * 90.00372 * 9 7 5 11 11 H 1.48505 * 109.47495 * 210.00714 * 9 7 5 12 12 H 1.48504 * 109.47121 * 330.00112 * 9 7 5 13 13 C 1.46896 * 111.00209 * 63.20480 * 3 2 1 14 14 H 1.09002 * 109.47613 * 304.88512 * 13 3 2 15 15 C 1.53004 * 109.47276 * 184.88598 * 13 3 2 16 16 C 1.50698 * 109.47304 * 64.88518 * 13 3 2 17 17 O 1.21296 * 120.00100 * 13.72784 * 16 13 3 18 18 N 1.34777 * 120.00412 * 193.73155 * 16 13 3 19 19 C 1.40038 * 120.00202 * 184.78114 * 18 16 13 20 20 C 1.38814 * 120.07994 * 33.23850 * 19 18 16 21 21 C 1.38145 * 119.95489 * 179.72337 * 20 19 18 22 22 C 1.38288 * 120.11008 * 0.54574 * 21 20 19 23 23 C 1.50698 * 119.92223 * 179.74304 * 22 21 20 24 24 C 1.38263 * 120.15705 * 359.72967 * 22 21 20 25 25 C 1.38310 * 120.04810 * 359.97438 * 24 22 21 26 26 F 1.35096 * 120.05844 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.47071 * 65.29169 * 1 2 3 28 28 H 1.08994 * 109.47727 * 185.28981 * 1 2 3 29 29 H 1.09007 * 109.47078 * 305.29907 * 1 2 3 30 30 H 1.08994 * 109.46970 * 239.99083 * 2 1 3 31 31 H 1.09007 * 109.46746 * 119.99977 * 2 1 3 32 32 H 1.09002 * 109.46730 * 49.49897 * 4 3 2 33 33 H 1.09002 * 109.47392 * 169.49954 * 4 3 2 34 34 H 0.97003 * 120.00747 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47202 * 299.99850 * 15 13 3 36 36 H 1.08993 * 109.46990 * 59.99602 * 15 13 3 37 37 H 1.08999 * 109.47294 * 179.97438 * 15 13 3 38 38 H 0.97007 * 119.99991 * 4.77439 * 18 16 13 39 39 H 1.08000 * 120.01855 * 359.97438 * 20 19 18 40 40 H 1.07993 * 119.94349 * 180.24927 * 21 20 19 41 41 H 1.08995 * 109.47513 * 269.98410 * 23 22 21 42 42 H 1.09004 * 109.47056 * 29.98045 * 23 22 21 43 43 H 1.08994 * 109.47186 * 149.97984 * 23 22 21 44 44 H 1.08001 * 119.97916 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5635 2.1046 -1.1966 5 6 2.2831 1.5714 -2.4085 6 1 2.9468 0.7246 -2.3133 7 6 2.0945 2.1646 -3.6387 8 7 2.7222 1.6989 -4.6964 9 14 0.9464 3.6287 -3.8035 10 1 1.7114 4.8840 -3.5931 11 1 0.3460 3.6367 -5.1617 12 1 -0.1314 3.5295 -2.7866 13 6 1.6124 2.0874 1.2241 14 1 0.5298 2.0264 1.3350 15 6 2.0339 3.5554 1.1340 16 6 2.2762 1.4465 2.4156 17 8 3.1960 0.6725 2.2540 18 7 1.8477 1.7331 3.6609 19 6 2.5272 1.2170 4.7713 20 6 3.9021 1.0324 4.7217 21 6 4.5705 0.5285 5.8206 22 6 3.8707 0.1968 6.9663 23 6 4.6034 -0.3581 8.1606 24 6 2.5004 0.3734 7.0188 25 6 1.8254 0.8832 5.9245 26 9 0.4864 1.0554 5.9754 27 1 -0.3633 0.4296 -0.9336 28 1 -0.3634 -1.0232 0.0947 29 1 -0.3633 0.5939 0.8388 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.4899 1.9614 -1.3193 33 1 1.7779 3.1675 -1.0851 34 1 2.5893 2.1159 -5.5621 35 1 3.1165 3.6165 1.0232 36 1 1.5538 4.0190 0.2722 37 1 1.7312 4.0768 2.0421 38 1 1.0688 2.2971 3.7880 39 1 4.4494 1.2865 3.8260 40 1 5.6407 0.3887 5.7832 41 1 4.6434 -1.4450 8.0895 42 1 5.6170 0.0421 8.1831 43 1 4.0797 -0.0726 9.0729 44 1 1.9567 0.1138 7.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:08 Heat of formation + Delta-G solvation = -40.027930 kcal Electronic energy + Delta-G solvation = -25745.727082 eV Core-core repulsion = 21999.100067 eV Total energy + Delta-G solvation = -3746.627015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.07682 -40.62086 -38.99548 -37.14650 -35.04570 -32.68537 -32.19420 -31.24582 -30.75390 -29.19073 -26.85620 -26.82816 -23.99875 -23.28518 -22.73759 -21.82492 -20.52253 -19.17763 -17.92319 -17.16408 -17.01695 -16.77196 -16.32880 -15.74415 -15.35072 -15.25426 -14.59973 -14.35016 -14.26282 -13.95205 -13.85473 -13.76405 -13.41872 -13.24431 -12.58111 -12.53926 -12.39253 -12.15703 -12.08664 -12.01696 -11.92107 -11.61238 -11.36696 -11.22541 -10.97616 -10.70179 -10.54927 -10.38621 -10.02575 -9.90584 -9.41691 -9.24655 -8.99915 -8.54984 -8.16613 -7.36524 -6.03937 -4.00394 0.89665 1.03111 2.67533 2.88035 3.25902 3.33404 3.34259 3.43607 3.98243 4.40603 4.46180 4.58837 4.61489 4.75463 4.97970 5.00650 5.23574 5.27528 5.28831 5.30773 5.34446 5.38243 5.63851 5.67993 5.75653 5.78111 5.85278 5.89818 5.93241 6.01755 6.06267 6.26215 6.30222 6.33843 6.39548 6.47965 6.77084 6.79704 6.90474 7.01449 7.24197 7.58221 7.86177 7.95339 8.23854 8.65868 9.07066 9.56952 11.09466 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003156 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.672798 B = 8870.416772 C = 9101.460854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 N -0.500 5.500 4 C 0.154 3.846 5 C -0.503 4.503 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.062 3.938 14 H 0.060 0.940 15 C -0.146 4.146 16 C 0.521 3.479 17 O -0.490 6.490 18 N -0.680 5.680 19 C 0.124 3.876 20 C -0.092 4.092 21 C -0.108 4.108 22 C -0.082 4.082 23 C -0.111 4.111 24 C -0.137 4.137 25 C 0.068 3.932 26 F -0.139 7.139 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.064 0.936 32 H -0.004 1.004 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.410 0.590 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 0.466 24.952 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.072 4.072 3 N -0.224 5.224 4 C 0.028 3.972 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.051 4.051 14 H 0.077 0.923 15 C -0.203 4.203 16 C 0.309 3.691 17 O -0.360 6.360 18 N -0.326 5.326 19 C 0.028 3.972 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.083 4.083 23 C -0.168 4.168 24 C -0.156 4.156 25 C 0.046 3.954 26 F -0.118 7.118 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.013 0.987 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.246 0.754 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.607 -0.049 24.503 24.511 hybrid contribution -2.279 1.122 -0.184 2.547 sum -2.886 1.073 24.319 24.513 Atomic orbital electron populations 1.22439 0.99646 1.01172 1.01715 1.22106 0.91499 0.90601 1.03012 1.62035 1.59049 1.01702 0.99656 1.20418 0.94353 0.94397 0.88012 1.20985 1.26675 1.16712 0.89768 0.90090 1.24875 0.95684 0.96954 0.95794 1.69887 1.42862 1.41576 0.99584 0.86926 0.81759 0.83834 0.77607 1.20119 1.21221 1.19329 1.21556 0.97439 0.95424 0.90672 0.92296 1.21921 1.03761 0.92463 1.02194 1.21108 0.83896 0.80978 0.83144 1.90699 1.27812 1.32535 1.84987 1.43662 1.32702 1.51902 1.04382 1.17779 0.92000 1.00612 0.86825 1.21179 0.91495 0.98872 0.99664 1.21026 1.00411 0.99217 0.92019 1.19717 0.92771 0.99498 0.96297 1.20768 1.00040 1.01125 0.94879 1.20797 0.94573 1.02404 0.97853 1.17456 0.77110 1.05006 0.95843 1.91471 1.29847 1.93569 1.96921 0.91461 0.92903 0.93995 0.89262 0.91752 0.98672 0.94959 0.92684 0.90825 0.90249 0.92590 0.75372 0.83440 0.84995 0.90914 0.91182 0.91472 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.24 37.16 0.34 -2.96 16 2 C 0.06 1.12 5.57 -3.83 -0.02 1.10 16 3 N -0.50 -10.47 4.21 -229.48 -0.97 -11.44 16 4 C 0.15 3.58 3.36 -4.98 -0.02 3.57 16 5 C -0.50 -14.15 9.20 -34.44 -0.32 -14.46 16 6 H 0.08 2.53 7.48 -52.48 -0.39 2.14 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 9 Si 0.87 20.99 27.37 -169.99 -4.65 16.34 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 13 C 0.06 1.02 2.28 -68.87 -0.16 0.86 16 14 H 0.06 0.89 6.05 -51.93 -0.31 0.58 16 15 C -0.15 -2.15 8.70 37.16 0.32 -1.83 16 16 C 0.52 8.36 6.19 -10.99 -0.07 8.29 16 17 O -0.49 -9.44 12.67 5.54 0.07 -9.37 16 18 N -0.68 -8.73 5.24 -9.80 -0.05 -8.78 16 19 C 0.12 1.59 6.29 -83.59 -0.53 1.07 16 20 C -0.09 -1.17 8.66 -39.40 -0.34 -1.51 16 21 C -0.11 -1.10 9.69 -39.60 -0.38 -1.49 16 22 C -0.08 -0.75 5.88 -104.60 -0.62 -1.36 16 23 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 24 C -0.14 -1.34 9.67 -39.55 -0.38 -1.72 16 25 C 0.07 0.79 7.31 -39.25 -0.29 0.50 16 26 F -0.14 -1.65 16.94 2.25 0.04 -1.61 16 27 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.65 6.13 -51.92 -0.32 0.33 16 30 H 0.09 1.99 7.06 -51.93 -0.37 1.62 16 31 H 0.06 1.27 6.22 -51.92 -0.32 0.95 16 32 H 0.00 -0.10 5.35 -51.93 -0.28 -0.38 16 33 H 0.03 0.74 4.53 -51.93 -0.24 0.50 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.23 6.01 -51.93 -0.31 0.92 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 4.22 8.64 -40.82 -0.35 3.86 16 39 H 0.15 2.11 6.39 -52.49 -0.34 1.77 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -32.42 352.32 -7.76 -40.18 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.10 Total: 4.51 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.19 Total: -8.41 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.24 Total: -46.95 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.65 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.42 -7.76 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.157 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds