Wall clock time and date at job start Tue Mar 31 2020 09:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47554 * 2 1 4 4 C 1.46899 * 110.99947 * 299.25032 * 3 2 1 5 5 C 1.50698 * 109.47414 * 289.50083 * 4 3 2 6 6 H 1.08005 * 119.99638 * 4.96786 * 5 4 3 7 7 C 1.37868 * 120.00293 * 184.97256 * 5 4 3 8 8 N 1.31513 * 120.00233 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47425 * 90.00372 * 9 7 5 11 11 H 1.48505 * 109.47495 * 210.00714 * 9 7 5 12 12 H 1.48504 * 109.47121 * 330.00112 * 9 7 5 13 13 C 1.46896 * 111.00209 * 63.20480 * 3 2 1 14 14 H 1.09002 * 109.47613 * 304.88512 * 13 3 2 15 15 C 1.53004 * 109.47276 * 184.88598 * 13 3 2 16 16 C 1.50698 * 109.47304 * 64.88518 * 13 3 2 17 17 O 1.21296 * 120.00100 * 13.72784 * 16 13 3 18 18 N 1.34777 * 120.00412 * 193.73155 * 16 13 3 19 19 C 1.40038 * 120.00202 * 184.78114 * 18 16 13 20 20 C 1.38814 * 120.07994 * 33.23850 * 19 18 16 21 21 C 1.38145 * 119.95489 * 179.72337 * 20 19 18 22 22 C 1.38288 * 120.11008 * 0.54574 * 21 20 19 23 23 C 1.50698 * 119.92223 * 179.74304 * 22 21 20 24 24 C 1.38263 * 120.15705 * 359.72967 * 22 21 20 25 25 C 1.38310 * 120.04810 * 359.97438 * 24 22 21 26 26 F 1.35096 * 120.05844 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.47071 * 65.29169 * 1 2 3 28 28 H 1.08994 * 109.47727 * 185.28981 * 1 2 3 29 29 H 1.09007 * 109.47078 * 305.29907 * 1 2 3 30 30 H 1.08994 * 109.46970 * 239.99083 * 2 1 3 31 31 H 1.09007 * 109.46746 * 119.99977 * 2 1 3 32 32 H 1.09002 * 109.46730 * 49.49897 * 4 3 2 33 33 H 1.09002 * 109.47392 * 169.49954 * 4 3 2 34 34 H 0.97003 * 120.00747 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47202 * 299.99850 * 15 13 3 36 36 H 1.08993 * 109.46990 * 59.99602 * 15 13 3 37 37 H 1.08999 * 109.47294 * 179.97438 * 15 13 3 38 38 H 0.97007 * 119.99991 * 4.77439 * 18 16 13 39 39 H 1.08000 * 120.01855 * 359.97438 * 20 19 18 40 40 H 1.07993 * 119.94349 * 180.24927 * 21 20 19 41 41 H 1.08995 * 109.47513 * 269.98410 * 23 22 21 42 42 H 1.09004 * 109.47056 * 29.98045 * 23 22 21 43 43 H 1.08994 * 109.47186 * 149.97984 * 23 22 21 44 44 H 1.08001 * 119.97916 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5635 2.1046 -1.1966 5 6 2.2831 1.5714 -2.4085 6 1 2.9468 0.7246 -2.3133 7 6 2.0945 2.1646 -3.6387 8 7 2.7222 1.6989 -4.6964 9 14 0.9464 3.6287 -3.8035 10 1 1.7114 4.8840 -3.5931 11 1 0.3460 3.6367 -5.1617 12 1 -0.1314 3.5295 -2.7866 13 6 1.6124 2.0874 1.2241 14 1 0.5298 2.0264 1.3350 15 6 2.0339 3.5554 1.1340 16 6 2.2762 1.4465 2.4156 17 8 3.1960 0.6725 2.2540 18 7 1.8477 1.7331 3.6609 19 6 2.5272 1.2170 4.7713 20 6 3.9021 1.0324 4.7217 21 6 4.5705 0.5285 5.8206 22 6 3.8707 0.1968 6.9663 23 6 4.6034 -0.3581 8.1606 24 6 2.5004 0.3734 7.0188 25 6 1.8254 0.8832 5.9245 26 9 0.4864 1.0554 5.9754 27 1 -0.3633 0.4296 -0.9336 28 1 -0.3634 -1.0232 0.0947 29 1 -0.3633 0.5939 0.8388 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.4899 1.9614 -1.3193 33 1 1.7779 3.1675 -1.0851 34 1 2.5893 2.1159 -5.5621 35 1 3.1165 3.6165 1.0232 36 1 1.5538 4.0190 0.2722 37 1 1.7312 4.0768 2.0421 38 1 1.0688 2.2971 3.7880 39 1 4.4494 1.2865 3.8260 40 1 5.6407 0.3887 5.7832 41 1 4.6434 -1.4450 8.0895 42 1 5.6170 0.0421 8.1831 43 1 4.0797 -0.0726 9.0729 44 1 1.9567 0.1138 7.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:07 Heat of formation + Delta-G solvation = -61.861226 kcal Electronic energy + Delta-G solvation = -25746.673845 eV Core-core repulsion = 21999.100067 eV Total energy + Delta-G solvation = -3747.573778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96374 -41.78194 -40.02315 -38.56589 -36.14767 -34.72931 -33.46604 -32.26284 -31.57818 -30.95358 -28.48763 -27.65954 -25.38643 -24.40886 -24.16087 -22.86134 -21.78917 -20.58946 -19.12041 -18.80903 -18.24437 -17.87088 -17.31923 -16.88666 -16.67582 -16.58746 -16.25412 -15.60967 -15.46969 -15.18861 -14.83367 -14.70584 -14.52624 -14.40677 -14.27817 -13.91629 -13.58660 -13.35647 -13.17681 -13.01309 -12.88866 -12.72081 -12.66309 -12.57846 -12.42441 -12.37414 -12.21540 -11.86353 -11.58991 -11.37446 -11.30318 -10.76879 -10.67226 -9.86524 -9.08203 -8.95690 -8.24502 -6.27392 0.02568 0.18780 1.36537 1.38962 1.48741 1.49472 1.79816 2.37118 2.58023 3.05410 3.12361 3.17343 3.55846 3.71633 3.92257 3.97318 4.02657 4.18830 4.21447 4.27391 4.37517 4.46512 4.51051 4.55252 4.68745 4.73825 4.87404 4.89373 4.90129 4.97203 5.03883 5.04403 5.09821 5.16970 5.20165 5.29346 5.35749 5.41101 5.54583 5.59059 5.92150 5.95947 6.20395 6.36267 6.65757 6.78266 7.05833 7.34691 8.93011 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003156 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.672798 B = 8870.416772 C = 9101.460854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.527 5.527 4 C 0.166 3.834 5 C -0.512 4.512 6 H 0.026 0.974 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.241 1.241 13 C 0.060 3.940 14 H 0.085 0.915 15 C -0.144 4.144 16 C 0.526 3.474 17 O -0.532 6.532 18 N -0.664 5.664 19 C 0.099 3.901 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.073 4.073 23 C -0.111 4.111 24 C -0.135 4.135 25 C 0.062 3.938 26 F -0.141 7.141 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.004 0.996 33 H 0.047 0.953 34 H 0.266 0.734 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.424 0.576 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 1.959 28.350 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.252 5.252 4 C 0.040 3.960 5 C -0.550 4.550 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.164 1.164 13 C -0.052 4.052 14 H 0.103 0.897 15 C -0.201 4.201 16 C 0.314 3.686 17 O -0.406 6.406 18 N -0.311 5.311 19 C 0.004 3.996 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.074 4.074 23 C -0.167 4.167 24 C -0.154 4.154 25 C 0.040 3.960 26 F -0.120 7.120 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.262 0.738 39 H 0.141 0.859 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.601 1.455 27.968 28.126 hybrid contribution -1.536 0.530 -1.105 1.965 sum -4.137 1.985 26.863 27.252 Atomic orbital electron populations 1.22319 0.97019 1.02781 1.01772 1.21937 0.93609 0.90180 1.01025 1.61797 1.60429 1.02145 1.00786 1.20159 0.93813 0.94894 0.87113 1.21234 1.26101 1.15293 0.92398 0.95522 1.25894 0.97672 1.00632 0.95050 1.70074 1.45205 1.43788 1.00395 0.85709 0.79805 0.79285 0.78150 1.18721 1.21186 1.16439 1.21675 0.98839 0.95926 0.88746 0.89748 1.21937 1.02514 0.91465 1.04189 1.20970 0.83278 0.80429 0.83958 1.90692 1.29693 1.34595 1.85661 1.43367 1.32745 1.51516 1.03471 1.17905 0.92219 1.02287 0.87218 1.21115 0.91802 1.00319 0.99797 1.21285 1.01436 0.98526 0.91721 1.20102 0.92753 0.97821 0.96720 1.20860 1.00462 1.01494 0.93917 1.21164 0.94960 1.01194 0.98060 1.17579 0.77101 1.05332 0.95950 1.91466 1.29924 1.93638 1.96934 0.93040 0.91078 0.91571 0.93247 0.91728 0.97842 0.93554 0.92557 0.92741 0.90563 0.88412 0.73803 0.85859 0.83280 0.90037 0.90064 0.89790 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 9.24 71.98 0.67 -5.38 16 2 C 0.06 2.50 5.57 86.30 0.48 2.98 16 3 N -0.53 -22.39 4.21 -879.94 -3.71 -26.09 16 4 C 0.17 7.74 3.36 85.56 0.29 8.03 16 5 C -0.51 -30.05 9.20 25.60 0.24 -29.81 16 6 H 0.03 1.80 7.48 -2.91 -0.02 1.77 16 7 C 0.00 0.23 5.47 84.65 0.46 0.69 16 8 N -0.95 -60.70 13.96 21.44 0.30 -60.41 16 9 Si 0.95 43.07 27.37 68.60 1.88 44.95 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.24 -9.83 6.69 99.48 0.67 -9.17 16 13 C 0.06 1.90 2.28 44.17 0.10 2.00 16 14 H 0.09 2.27 6.05 -2.39 -0.01 2.26 16 15 C -0.14 -3.94 8.70 71.98 0.63 -3.32 16 16 C 0.53 16.65 6.19 87.66 0.54 17.20 16 17 O -0.53 -21.22 12.67 -3.08 -0.04 -21.26 16 18 N -0.66 -16.20 5.24 -303.31 -1.59 -17.79 16 19 C 0.10 2.46 6.29 38.16 0.24 2.70 16 20 C -0.11 -2.81 8.66 22.39 0.19 -2.61 16 21 C -0.11 -2.13 9.69 22.26 0.22 -1.92 16 22 C -0.07 -1.14 5.88 -19.85 -0.12 -1.25 16 23 C -0.11 -0.95 10.01 71.24 0.71 -0.24 16 24 C -0.13 -2.25 9.67 22.29 0.22 -2.03 16 25 C 0.06 1.33 7.31 22.48 0.16 1.49 16 26 F -0.14 -3.02 16.94 44.97 0.76 -2.25 16 27 H 0.05 1.89 6.49 -2.38 -0.02 1.87 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.88 6.13 -2.38 -0.01 1.86 16 30 H 0.05 2.38 7.06 -2.39 -0.02 2.36 16 31 H 0.06 2.64 6.22 -2.38 -0.01 2.62 16 32 H 0.00 0.18 5.35 -2.39 -0.01 0.17 16 33 H 0.05 2.04 4.53 -2.39 -0.01 2.03 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.15 6.01 -2.39 -0.01 2.14 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.42 7.71 8.64 -92.70 -0.80 6.90 16 39 H 0.12 3.73 6.39 -2.91 -0.02 3.72 16 40 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.55 8.08 -2.38 -0.02 0.53 16 43 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 44 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -75.31 352.32 2.82 -72.49 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.19 Total: 21.83 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.03 Total: -11.46 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -5.00 Total: -104.29 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.76 Total: -2.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -75.31 2.82 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds