Wall clock time and date at job start Tue Mar 31 2020 09:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.47272 * 2 1 4 4 C 1.81399 * 103.00124 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47122 * 180.02562 * 4 3 2 6 6 C 1.38886 * 120.74861 * 270.28717 * 5 4 3 7 7 C 1.38026 * 119.33120 * 180.29789 * 6 5 4 8 8 N 1.31974 * 120.85540 * 359.68539 * 7 6 5 9 9 C 1.32400 * 121.61845 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.69949 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99795 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47210 * 300.00019 * 12 11 10 14 14 C 1.53005 * 109.46882 * 59.99994 * 12 11 10 15 15 C 1.53002 * 109.47262 * 179.97438 * 12 11 10 16 16 C 1.50694 * 109.47293 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99783 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00005 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99807 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00090 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47570 * 89.99725 * 20 18 16 22 22 H 1.48500 * 109.47278 * 210.00005 * 20 18 16 23 23 H 1.48503 * 109.47138 * 329.99552 * 20 18 16 24 24 C 1.38297 * 120.74853 * 89.99698 * 5 4 3 25 25 H 1.08992 * 109.47065 * 299.99550 * 1 2 3 26 26 H 1.09004 * 109.47082 * 60.00272 * 1 2 3 27 27 H 1.09001 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 239.99996 * 2 1 3 29 29 H 1.08994 * 109.47182 * 120.00274 * 2 1 3 30 30 H 1.08996 * 109.47211 * 60.00545 * 4 3 2 31 31 H 1.08990 * 109.47280 * 299.99683 * 4 3 2 32 32 H 1.08003 * 120.33334 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.57370 * 179.69860 * 7 6 5 34 34 H 0.96994 * 119.99820 * 359.97438 * 10 9 8 35 35 H 1.09001 * 109.46940 * 299.99956 * 11 10 9 36 36 H 1.09003 * 109.46805 * 59.99711 * 11 10 9 37 37 H 1.08996 * 109.47180 * 59.99800 * 13 12 11 38 38 H 1.09000 * 109.46794 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.46974 * 299.99556 * 13 12 11 40 40 H 1.09001 * 109.47158 * 59.99801 * 14 12 11 41 41 H 1.09000 * 109.46652 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.47070 * 299.99932 * 14 12 11 43 43 H 1.09009 * 109.46848 * 300.00062 * 15 12 11 44 44 H 1.08995 * 109.46744 * 59.99719 * 15 12 11 45 45 H 0.97008 * 119.99890 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.45299 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.5964 2.8609 0.0015 6 6 4.9022 3.5024 -1.1918 7 6 5.5116 4.7403 -1.1570 8 7 5.7998 5.3209 -0.0074 9 6 5.5190 4.7443 1.1510 10 7 5.8397 5.3921 2.3383 11 6 5.5315 4.7604 3.6237 12 6 5.9843 5.6754 4.7632 13 6 7.4924 5.9112 4.6595 14 6 5.2507 7.0145 4.6641 15 6 5.6618 5.0160 6.1057 16 6 6.1072 5.9176 7.2280 17 1 6.5732 6.8663 7.0061 18 6 5.9187 5.5319 8.5382 19 7 6.3079 6.3185 9.5178 20 14 5.1120 3.8914 8.9221 21 1 6.1544 2.8386 9.0225 22 1 4.3811 3.9888 10.2111 23 1 4.1590 3.5427 7.8379 24 6 4.9051 3.4964 1.1904 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.2406 0.9542 -0.8890 31 1 4.2399 0.9544 0.8909 32 1 4.6696 3.0353 -2.1374 33 1 5.7556 5.2405 -2.0826 34 1 6.2676 6.2623 2.3158 35 1 4.4571 4.5921 3.6974 36 1 6.0544 3.8066 3.6945 37 1 7.7218 6.3811 3.7031 38 1 7.8148 6.5635 5.4711 39 1 8.0149 4.9573 4.7301 40 1 4.1763 6.8466 4.7380 41 1 5.5730 7.6662 5.4762 42 1 5.4800 7.4845 3.7077 43 1 4.5872 4.8485 6.1793 44 1 6.1840 4.0619 6.1765 45 1 6.1750 6.0473 10.4396 46 1 4.6774 3.0281 2.1366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090228731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:44 Heat of formation + Delta-G solvation = 13.673226 kcal Electronic energy + Delta-G solvation = -22690.361948 eV Core-core repulsion = 19512.276765 eV Total energy + Delta-G solvation = -3178.085182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26117 -37.84143 -34.74810 -33.72792 -33.13232 -32.24622 -29.58146 -28.22115 -27.65397 -26.54080 -26.10426 -23.95357 -23.17557 -22.12085 -21.39210 -18.28789 -17.22326 -16.94673 -16.60734 -16.27464 -15.69187 -15.22181 -15.17212 -14.64202 -14.55785 -14.53651 -13.94465 -13.69599 -13.44890 -13.32565 -13.11322 -12.71348 -12.60297 -12.54680 -12.28299 -11.97003 -11.84401 -11.67679 -11.31925 -11.14744 -11.01286 -10.64505 -10.51172 -10.36925 -10.12923 -9.85455 -9.76678 -9.55733 -9.43948 -9.42279 -9.01746 -8.55812 -7.95059 -7.55150 -6.05924 -4.03315 0.81050 1.41140 1.82654 2.32677 3.28229 3.34186 3.36890 3.38930 3.99027 4.30905 4.42894 4.51008 4.53975 4.60224 4.83234 5.01143 5.06025 5.19658 5.25000 5.26092 5.30187 5.33091 5.41752 5.45980 5.46453 5.62299 5.71274 5.77754 5.90769 5.98813 6.08037 6.15294 6.31091 6.33119 6.52301 6.60176 6.62160 6.87730 7.01402 7.03762 7.15803 7.17568 7.32998 7.73015 7.79435 8.28038 8.51491 8.98636 9.56319 11.06942 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003297 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.970639 B = 8490.967198 C =10315.708354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 S -0.242 6.242 4 C -0.047 4.047 5 C 0.008 3.992 6 C -0.230 4.230 7 C 0.151 3.849 8 N -0.547 5.547 9 C 0.411 3.589 10 N -0.712 5.712 11 C 0.131 3.869 12 C -0.060 4.060 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.001 4.001 16 C -0.511 4.511 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.222 4.222 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.406 0.594 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.018 0.982 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -11.325 -22.152 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.244 4.244 3 S -0.014 6.014 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.255 4.255 7 C -0.008 4.008 8 N -0.266 5.266 9 C 0.174 3.826 10 N -0.343 5.343 11 C 0.007 3.993 12 C -0.060 4.060 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.039 4.039 16 C -0.549 4.549 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.250 4.250 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.572 -9.706 -21.726 24.686 hybrid contribution 0.076 -2.567 0.387 2.597 sum -6.496 -12.273 -21.339 25.460 Atomic orbital electron populations 1.21505 0.92130 1.02538 1.03351 1.23353 1.00376 0.95826 1.04861 1.87333 1.03959 1.12076 1.98066 1.22274 0.93843 0.97479 1.05873 1.19195 0.94137 0.93466 0.93290 1.21561 1.07682 0.98404 0.97883 1.22303 0.92106 0.91517 0.94836 1.67195 1.25033 1.36923 0.97443 1.18399 0.89254 0.88424 0.86570 1.44833 1.64938 1.22617 1.01936 1.21717 0.99802 0.96452 0.81303 1.20649 0.95717 0.95168 0.94499 1.21774 0.94932 1.01593 1.00365 1.21772 0.99647 0.96892 1.00348 1.19594 0.96546 0.96063 0.91698 1.21075 1.39439 1.05288 0.89077 0.90367 1.25003 0.95219 0.96775 0.96458 1.69905 1.47799 1.37166 0.99368 0.86855 0.80157 0.84874 0.77850 1.20405 1.21476 1.19041 1.21261 1.07988 0.96821 0.98917 0.91519 0.91679 0.91093 0.90176 0.90036 0.88896 0.88894 0.85441 0.82964 0.75713 0.92147 0.92312 0.94762 0.90880 0.93495 0.93434 0.90881 0.94759 0.96382 0.96892 0.92777 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.92 37.16 0.37 -0.52 16 2 C -0.10 -0.69 6.66 37.16 0.25 -0.45 16 3 S -0.24 -2.50 21.72 -107.50 -2.33 -4.84 16 4 C -0.05 -0.44 6.11 36.01 0.22 -0.22 16 5 C 0.01 0.10 5.17 -104.36 -0.54 -0.44 16 6 C -0.23 -2.50 9.81 -39.42 -0.39 -2.89 16 7 C 0.15 1.77 11.17 -17.57 -0.20 1.57 16 8 N -0.55 -7.96 10.39 -12.43 -0.13 -8.09 16 9 C 0.41 6.07 7.65 -155.01 -1.19 4.89 16 10 N -0.71 -10.57 5.13 -60.42 -0.31 -10.88 16 11 C 0.13 2.05 3.78 -4.04 -0.02 2.04 16 12 C -0.06 -1.09 0.54 -154.51 -0.08 -1.17 16 13 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 14 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 15 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 16 C -0.51 -13.58 8.20 -34.44 -0.28 -13.86 16 17 H 0.08 2.22 5.92 -52.48 -0.31 1.91 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 20 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 C -0.22 -3.00 9.03 -39.23 -0.35 -3.35 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.41 5.99 6.29 -40.82 -0.26 5.73 16 35 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 36 H 0.06 0.90 7.93 -51.93 -0.41 0.48 16 37 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 38 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.46 6.61 -51.93 -0.34 1.12 16 42 H 0.03 0.53 6.86 -51.93 -0.36 0.18 16 43 H 0.02 0.41 7.20 -51.92 -0.37 0.03 16 44 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.13 1.73 6.71 -52.49 -0.35 1.38 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -30.01 376.27 -10.52 -40.53 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.72 Total: 4.24 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.79 Total: -16.75 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.33 Total: -45.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.33 Total: -4.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.01 -10.52 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090228731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.200 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds