Wall clock time and date at job start Tue Mar 31 2020 09:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81392 * 109.47272 * 2 1 4 4 C 1.81399 * 103.00124 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47122 * 180.02562 * 4 3 2 6 6 C 1.38886 * 120.74861 * 270.28717 * 5 4 3 7 7 C 1.38026 * 119.33120 * 180.29789 * 6 5 4 8 8 N 1.31974 * 120.85540 * 359.68539 * 7 6 5 9 9 C 1.32400 * 121.61845 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.69949 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99795 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47210 * 300.00019 * 12 11 10 14 14 C 1.53005 * 109.46882 * 59.99994 * 12 11 10 15 15 C 1.53002 * 109.47262 * 179.97438 * 12 11 10 16 16 C 1.50694 * 109.47293 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99783 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00005 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99807 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00090 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47570 * 89.99725 * 20 18 16 22 22 H 1.48500 * 109.47278 * 210.00005 * 20 18 16 23 23 H 1.48503 * 109.47138 * 329.99552 * 20 18 16 24 24 C 1.38297 * 120.74853 * 89.99698 * 5 4 3 25 25 H 1.08992 * 109.47065 * 299.99550 * 1 2 3 26 26 H 1.09004 * 109.47082 * 60.00272 * 1 2 3 27 27 H 1.09001 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 239.99996 * 2 1 3 29 29 H 1.08994 * 109.47182 * 120.00274 * 2 1 3 30 30 H 1.08996 * 109.47211 * 60.00545 * 4 3 2 31 31 H 1.08990 * 109.47280 * 299.99683 * 4 3 2 32 32 H 1.08003 * 120.33334 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.57370 * 179.69860 * 7 6 5 34 34 H 0.96994 * 119.99820 * 359.97438 * 10 9 8 35 35 H 1.09001 * 109.46940 * 299.99956 * 11 10 9 36 36 H 1.09003 * 109.46805 * 59.99711 * 11 10 9 37 37 H 1.08996 * 109.47180 * 59.99800 * 13 12 11 38 38 H 1.09000 * 109.46794 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.46974 * 299.99556 * 13 12 11 40 40 H 1.09001 * 109.47158 * 59.99801 * 14 12 11 41 41 H 1.09000 * 109.46652 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.47070 * 299.99932 * 14 12 11 43 43 H 1.09009 * 109.46848 * 300.00062 * 15 12 11 44 44 H 1.08995 * 109.46744 * 59.99719 * 15 12 11 45 45 H 0.97008 * 119.99890 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.45299 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.5964 2.8609 0.0015 6 6 4.9022 3.5024 -1.1918 7 6 5.5116 4.7403 -1.1570 8 7 5.7998 5.3209 -0.0074 9 6 5.5190 4.7443 1.1510 10 7 5.8397 5.3921 2.3383 11 6 5.5315 4.7604 3.6237 12 6 5.9843 5.6754 4.7632 13 6 7.4924 5.9112 4.6595 14 6 5.2507 7.0145 4.6641 15 6 5.6618 5.0160 6.1057 16 6 6.1072 5.9176 7.2280 17 1 6.5732 6.8663 7.0061 18 6 5.9187 5.5319 8.5382 19 7 6.3079 6.3185 9.5178 20 14 5.1120 3.8914 8.9221 21 1 6.1544 2.8386 9.0225 22 1 4.3811 3.9888 10.2111 23 1 4.1590 3.5427 7.8379 24 6 4.9051 3.4964 1.1904 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.2406 0.9542 -0.8890 31 1 4.2399 0.9544 0.8909 32 1 4.6696 3.0353 -2.1374 33 1 5.7556 5.2405 -2.0826 34 1 6.2676 6.2623 2.3158 35 1 4.4571 4.5921 3.6974 36 1 6.0544 3.8066 3.6945 37 1 7.7218 6.3811 3.7031 38 1 7.8148 6.5635 5.4711 39 1 8.0149 4.9573 4.7301 40 1 4.1763 6.8466 4.7380 41 1 5.5730 7.6662 5.4762 42 1 5.4800 7.4845 3.7077 43 1 4.5872 4.8485 6.1793 44 1 6.1840 4.0619 6.1765 45 1 6.1750 6.0473 10.4396 46 1 4.6774 3.0281 2.1366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090228731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:43 Heat of formation + Delta-G solvation = -1.622470 kcal Electronic energy + Delta-G solvation = -22691.025219 eV Core-core repulsion = 19512.276765 eV Total energy + Delta-G solvation = -3178.748454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23465 -39.22801 -35.97462 -34.79831 -34.14227 -33.64768 -30.76947 -29.42298 -29.00201 -28.02582 -27.38166 -24.69309 -24.49147 -23.35087 -22.43970 -19.74224 -18.90339 -18.24562 -17.70090 -17.06470 -16.59692 -16.27584 -16.07062 -15.85268 -15.66324 -15.56501 -15.33208 -14.91757 -14.87691 -14.26708 -14.20431 -14.09850 -13.94339 -13.79972 -13.16477 -12.98882 -12.84749 -12.72012 -12.63902 -12.56580 -12.30907 -12.27000 -12.14871 -11.75957 -11.57762 -11.20672 -11.08384 -10.92717 -10.91148 -10.70099 -10.38502 -10.34432 -8.72066 -8.57217 -8.21658 -6.22629 -0.00591 0.48561 1.06918 1.37315 1.39662 1.49897 1.65609 2.24918 2.40082 3.04800 3.13782 3.48929 3.75945 3.88836 3.99175 4.04254 4.04574 4.08655 4.15142 4.28201 4.31153 4.52376 4.53554 4.54928 4.64532 4.70119 4.70643 4.86691 4.89544 4.91451 4.92724 4.99780 5.01591 5.06442 5.22943 5.29207 5.35981 5.39106 5.43392 5.52510 5.65759 5.70043 5.77035 6.09018 6.39060 6.68024 6.84724 7.28509 7.40035 8.94397 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003297 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.970639 B = 8490.967198 C =10315.708354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 S -0.299 6.299 4 C -0.036 4.036 5 C 0.006 3.994 6 C -0.222 4.222 7 C 0.141 3.859 8 N -0.570 5.570 9 C 0.391 3.609 10 N -0.716 5.716 11 C 0.148 3.852 12 C -0.056 4.056 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.000 4.000 16 C -0.505 4.505 17 H 0.046 0.954 18 C 0.002 3.998 19 N -0.955 5.955 20 Si 0.939 3.061 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.246 1.246 24 C -0.237 4.237 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.404 0.596 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -14.022 -24.910 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.230 4.230 3 S -0.071 6.071 4 C -0.183 4.183 5 C -0.003 4.003 6 C -0.246 4.246 7 C -0.016 4.016 8 N -0.289 5.289 9 C 0.156 3.844 10 N -0.348 5.348 11 C 0.023 3.977 12 C -0.056 4.056 13 C -0.180 4.180 14 C -0.181 4.181 15 C -0.038 4.038 16 C -0.543 4.543 17 H 0.064 0.936 18 C -0.194 4.194 19 N -0.596 5.596 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.169 1.169 24 C -0.264 4.264 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.173 0.827 33 H 0.199 0.801 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.488 -12.417 -24.529 28.494 hybrid contribution 0.357 -1.694 1.106 2.054 sum -7.131 -14.111 -23.423 28.260 Atomic orbital electron populations 1.21529 0.91742 1.03577 1.02652 1.23408 1.00522 0.93150 1.05963 1.87532 1.05550 1.15824 1.98229 1.22258 0.92445 0.96368 1.07275 1.19499 0.93503 0.94372 0.92969 1.21910 1.06046 0.97887 0.98799 1.22870 0.91658 0.92080 0.95008 1.67189 1.25838 1.37825 0.98093 1.18533 0.90298 0.89066 0.86551 1.44639 1.65797 1.22644 1.01763 1.21395 0.99758 0.95761 0.80770 1.20512 0.96001 0.95425 0.93676 1.21682 0.94669 1.01238 1.00440 1.21685 0.99458 0.96494 1.00420 1.19547 0.96351 0.95590 0.92334 1.21383 1.37788 1.04638 0.90473 0.93609 1.25906 0.96308 1.00695 0.96473 1.70065 1.50198 1.39570 0.99799 0.85824 0.79614 0.80292 0.77928 1.19498 1.21709 1.16918 1.21349 1.08602 0.96729 0.99716 0.92655 0.91978 0.89064 0.88511 0.89412 0.86647 0.88338 0.82683 0.80129 0.75939 0.92086 0.91666 0.92388 0.93910 0.93215 0.93462 0.93866 0.92419 0.96242 0.96227 0.92891 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.92 71.98 0.71 -0.77 16 2 C -0.08 -0.98 6.66 71.98 0.48 -0.50 16 3 S -0.30 -5.59 21.72 -56.49 -1.23 -6.82 16 4 C -0.04 -0.58 6.11 71.24 0.44 -0.14 16 5 C 0.01 0.12 5.17 -19.69 -0.10 0.02 16 6 C -0.22 -4.14 9.81 22.37 0.22 -3.93 16 7 C 0.14 2.96 11.17 84.62 0.95 3.91 16 8 N -0.57 -15.67 10.39 -193.25 -2.01 -17.68 16 9 C 0.39 11.04 7.65 133.06 1.02 12.06 16 10 N -0.72 -20.38 5.13 -345.07 -1.77 -22.15 16 11 C 0.15 4.41 3.78 86.38 0.33 4.74 16 12 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 13 C -0.12 -4.34 8.05 71.98 0.58 -3.76 16 14 C -0.12 -4.42 8.05 71.98 0.58 -3.84 16 15 C 0.00 -0.02 3.11 29.85 0.09 0.08 16 16 C -0.50 -27.50 8.20 25.60 0.21 -27.29 16 17 H 0.05 2.74 5.92 -2.91 -0.02 2.72 16 18 C 0.00 0.12 5.47 84.65 0.46 0.58 16 19 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 20 Si 0.94 43.54 27.47 68.60 1.88 45.43 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 24 C -0.24 -6.00 9.03 22.50 0.20 -5.80 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.10 1.45 8.10 -2.40 -0.02 1.43 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.40 11.46 6.29 -92.71 -0.58 10.88 16 35 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 36 H 0.07 1.87 7.93 -2.39 -0.02 1.85 16 37 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 38 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.04 1.79 6.61 -2.39 -0.02 1.77 16 42 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 43 H 0.02 0.85 7.20 -2.38 -0.02 0.83 16 44 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 45 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 46 H 0.13 3.25 6.71 -2.91 -0.02 3.23 16 Total: -1.00 -66.51 376.27 3.63 -62.88 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.32 Total: 23.99 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 6.14 Total: -26.67 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -3.48 Total: -98.81 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -1.23 Total: -6.82 kcal Total: -66.51 3.63 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090228731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.261 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds