Wall clock time and date at job start Tue Mar 31 2020 09:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46925 * 2 1 4 4 C 1.52994 * 109.47262 * 119.99986 * 2 1 3 5 5 C 1.50693 * 109.47304 * 185.00074 * 4 2 1 6 6 O 1.21286 * 120.00112 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.39918 * 120.00201 * 175.37562 * 7 5 4 9 9 C 1.38911 * 120.05905 * 214.81231 * 8 7 5 10 10 C 1.38103 * 119.97746 * 179.76866 * 9 8 7 11 11 C 1.38263 * 120.09446 * 0.49166 * 10 9 8 12 12 C 1.38482 * 120.11709 * 359.78628 * 11 10 9 13 13 F 1.35101 * 119.98949 * 179.97438 * 12 11 10 14 14 C 1.38352 * 120.02134 * 359.95485 * 12 11 10 15 15 N 1.46897 * 109.46853 * 240.00012 * 2 1 3 16 16 C 1.46902 * 110.99970 * 85.00451 * 15 2 1 17 17 C 1.53000 * 109.47057 * 179.97438 * 16 15 2 18 18 C 1.53007 * 109.47250 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46936 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99594 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99844 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46825 * 59.99877 * 23 21 19 25 25 H 1.48501 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47024 * 300.00158 * 23 21 19 27 27 H 1.08992 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46943 * 300.00238 * 1 2 3 29 29 H 1.09007 * 109.46814 * 60.00036 * 1 2 3 30 30 H 1.09005 * 109.46802 * 64.99661 * 4 2 1 31 31 H 1.09003 * 109.47221 * 305.00185 * 4 2 1 32 32 H 0.97001 * 119.99656 * 355.38065 * 7 5 4 33 33 H 1.07998 * 120.00664 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.94739 * 180.25441 * 10 9 8 35 35 H 1.08006 * 119.93743 * 179.76640 * 11 10 9 36 36 H 1.08001 * 120.05301 * 180.02562 * 14 12 11 37 37 H 1.00905 * 111.00083 * 208.94967 * 15 2 1 38 38 H 1.09008 * 109.46984 * 299.99309 * 16 15 2 39 39 H 1.09004 * 109.47781 * 59.99614 * 16 15 2 40 40 H 1.08998 * 109.47589 * 299.99712 * 17 16 15 41 41 H 1.09001 * 109.47241 * 59.99784 * 17 16 15 42 42 H 1.08996 * 109.47041 * 300.00069 * 18 17 16 43 43 H 1.09001 * 109.46720 * 60.00022 * 18 17 16 44 44 H 0.96999 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1451 -0.0211 0.4440 7 7 4.2150 -1.1805 2.3342 8 6 5.6141 -1.1658 2.3436 9 6 6.3177 -2.2409 2.8716 10 6 7.6986 -2.2268 2.8756 11 6 8.3823 -1.1395 2.3639 12 6 7.6848 -0.0631 1.8418 13 9 8.3555 0.9983 1.3429 14 6 6.3014 -0.0744 1.8304 15 7 2.0197 -0.6925 -1.1994 16 6 2.0825 0.2226 -2.3469 17 6 2.5962 -0.5328 -3.5742 18 6 2.6611 0.4201 -4.7695 19 6 3.1677 -0.3239 -5.9781 20 1 3.4179 -1.3717 -5.9016 21 6 3.3117 0.3332 -7.1817 22 7 3.0075 1.6093 -7.2748 23 14 3.9390 -0.5892 -8.6802 24 1 3.0179 -1.7114 -8.9920 25 1 4.0033 0.3361 -9.8399 26 1 5.2951 -1.1253 -8.3995 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.7516 -1.7715 1.2055 31 1 1.6055 -0.2617 2.1369 32 1 3.7295 -1.5977 3.0630 33 1 5.7849 -3.0893 3.2751 34 1 8.2452 -3.0647 3.2826 35 1 9.4623 -1.1295 2.3718 36 1 5.7569 0.7646 1.4230 37 1 2.9174 -1.1205 -1.0288 38 1 1.0871 0.6164 -2.5525 39 1 2.7589 1.0463 -2.1182 40 1 3.5917 -0.9263 -3.3684 41 1 1.9202 -1.3566 -3.8030 42 1 1.6655 0.8132 -4.9752 43 1 3.3370 1.2442 -4.5408 44 1 3.1092 2.0716 -8.1214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178640316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:36 Heat of formation + Delta-G solvation = -72.016687 kcal Electronic energy + Delta-G solvation = -24586.160977 eV Core-core repulsion = 20838.146825 eV Total energy + Delta-G solvation = -3748.014152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.04560 -40.96194 -38.88926 -36.86438 -35.05003 -34.03253 -32.25716 -30.97466 -30.43346 -29.46688 -27.93885 -25.80123 -23.71712 -22.93650 -22.35760 -21.16563 -20.40623 -19.79016 -18.53500 -17.53900 -16.71001 -16.45223 -16.21222 -15.93829 -15.76410 -15.72514 -15.38565 -14.70911 -14.47042 -14.22031 -13.95837 -13.73100 -13.45500 -12.88242 -12.81240 -12.40237 -12.27056 -12.23383 -12.09192 -11.83808 -11.77381 -11.56354 -11.29147 -10.92315 -10.73426 -10.65667 -10.46480 -10.40524 -10.04846 -9.55970 -9.21936 -9.10131 -8.95778 -8.59135 -8.24887 -8.03955 -5.90382 -3.91999 0.76937 0.91407 2.22880 2.57968 3.30634 3.40107 3.43475 3.46748 4.00122 4.29269 4.40085 4.50391 4.55832 4.62045 4.68832 4.76549 5.01306 5.09788 5.13243 5.21330 5.45060 5.47965 5.56471 5.65637 5.76266 5.77530 5.91183 5.94026 5.97505 6.01826 6.05329 6.12663 6.31322 6.52068 6.63104 6.86776 6.90700 6.93464 7.27231 7.48231 7.69039 7.79215 7.82802 7.96794 8.11091 8.54724 9.15039 9.71175 11.21184 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003044 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.495981 B = 9196.097093 C =10973.907395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.094 3.906 3 H 0.050 0.950 4 C -0.142 4.142 5 C 0.508 3.492 6 O -0.505 6.505 7 N -0.676 5.676 8 C 0.176 3.824 9 C -0.158 4.158 10 C -0.072 4.072 11 C -0.172 4.172 12 C 0.120 3.880 13 F -0.135 7.135 14 C -0.159 4.159 15 N -0.683 5.683 16 C 0.063 3.937 17 C -0.105 4.105 18 C 0.023 3.977 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.414 0.586 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.340 0.660 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 -7.448 28.827 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 H 0.068 0.932 4 C -0.182 4.182 5 C 0.297 3.703 6 O -0.379 6.379 7 N -0.322 5.322 8 C 0.081 3.919 9 C -0.179 4.179 10 C -0.091 4.091 11 C -0.192 4.192 12 C 0.100 3.900 13 F -0.114 7.114 14 C -0.180 4.180 15 N -0.316 5.316 16 C -0.065 4.065 17 C -0.143 4.143 18 C -0.015 4.015 19 C -0.556 4.556 20 H 0.072 0.928 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.250 0.750 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.451 -7.061 27.846 28.831 hybrid contribution 1.066 0.073 -0.390 1.138 sum 3.517 -6.988 27.456 28.549 Atomic orbital electron populations 1.21793 0.94079 1.02353 1.01495 1.21277 0.95654 0.96424 0.88343 0.93156 1.21987 0.89975 1.04797 1.01421 1.21215 0.90917 0.77683 0.80506 1.90801 1.69877 1.39397 1.37782 1.43616 1.04351 1.59180 1.25082 1.17434 0.82936 0.93190 0.98326 1.20964 0.94557 0.97425 1.04928 1.20775 0.93359 0.97464 0.97486 1.21158 1.01046 0.93978 1.02975 1.17530 0.89795 0.85163 0.97509 1.91530 1.80253 1.54511 1.85063 1.21266 0.92629 1.00124 1.03970 1.60802 1.33542 1.33417 1.03850 1.22088 1.00077 0.93929 0.90450 1.21595 0.99186 0.99339 0.94227 1.19051 0.96990 0.94272 0.91140 1.21241 1.43354 0.96366 0.94610 0.92783 1.25033 0.95715 0.94890 0.98921 1.69966 1.49039 1.08979 1.25715 0.86659 0.79439 0.79590 0.82317 1.20251 1.21335 1.20293 0.91963 0.92944 0.91952 0.87450 0.87973 0.75008 0.84981 0.84561 0.84632 0.83037 0.84092 0.91808 0.95478 0.93814 0.92822 0.96661 0.96816 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.42 37.16 0.35 -1.12 16 2 C 0.09 1.14 2.21 -67.71 -0.15 0.99 16 3 H 0.05 0.71 7.61 -51.93 -0.40 0.31 16 4 C -0.14 -1.16 5.30 -27.89 -0.15 -1.31 16 5 C 0.51 5.35 7.14 -10.99 -0.08 5.28 16 6 O -0.51 -7.73 12.02 5.55 0.07 -7.67 16 7 N -0.68 -5.20 5.34 -9.87 -0.05 -5.26 16 8 C 0.18 1.70 6.30 -83.71 -0.53 1.17 16 9 C -0.16 -1.17 9.96 -39.38 -0.39 -1.56 16 10 C -0.07 -0.52 10.04 -39.62 -0.40 -0.92 16 11 C -0.17 -1.56 10.02 -39.48 -0.40 -1.95 16 12 C 0.12 1.42 7.30 -39.45 -0.29 1.13 16 13 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 14 C -0.16 -1.94 8.68 -39.33 -0.34 -2.29 16 15 N -0.68 -10.79 6.18 -106.72 -0.66 -11.45 16 16 C 0.06 1.22 5.48 -3.82 -0.02 1.20 16 17 C -0.11 -2.40 5.41 -26.73 -0.14 -2.55 16 18 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -15.54 9.11 -34.44 -0.31 -15.86 16 20 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.05 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -28.19 13.29 55.43 0.74 -27.45 16 23 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.76 7.45 -51.92 -0.39 0.38 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.41 1.53 8.82 -40.82 -0.36 1.17 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.15 2.14 6.22 -52.49 -0.33 1.82 16 37 H 0.34 5.60 6.50 -39.29 -0.26 5.35 16 38 H 0.06 1.21 7.44 -51.92 -0.39 0.83 16 39 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -35.36 369.21 -9.13 -44.50 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.72 Total: 1.64 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.08 Total: -15.71 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.02 Total: -44.15 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.07 Total: -7.67 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.36 -9.13 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.521 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds