Wall clock time and date at job start Tue Mar 31 2020 09:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46925 * 2 1 4 4 C 1.52994 * 109.47262 * 119.99986 * 2 1 3 5 5 C 1.50693 * 109.47304 * 185.00074 * 4 2 1 6 6 O 1.21286 * 120.00112 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.39918 * 120.00201 * 175.37562 * 7 5 4 9 9 C 1.38911 * 120.05905 * 214.81231 * 8 7 5 10 10 C 1.38103 * 119.97746 * 179.76866 * 9 8 7 11 11 C 1.38263 * 120.09446 * 0.49166 * 10 9 8 12 12 C 1.38482 * 120.11709 * 359.78628 * 11 10 9 13 13 F 1.35101 * 119.98949 * 179.97438 * 12 11 10 14 14 C 1.38352 * 120.02134 * 359.95485 * 12 11 10 15 15 N 1.46897 * 109.46853 * 240.00012 * 2 1 3 16 16 C 1.46902 * 110.99970 * 85.00451 * 15 2 1 17 17 C 1.53000 * 109.47057 * 179.97438 * 16 15 2 18 18 C 1.53007 * 109.47250 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46936 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99594 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99844 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46825 * 59.99877 * 23 21 19 25 25 H 1.48501 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47024 * 300.00158 * 23 21 19 27 27 H 1.08992 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46943 * 300.00238 * 1 2 3 29 29 H 1.09007 * 109.46814 * 60.00036 * 1 2 3 30 30 H 1.09005 * 109.46802 * 64.99661 * 4 2 1 31 31 H 1.09003 * 109.47221 * 305.00185 * 4 2 1 32 32 H 0.97001 * 119.99656 * 355.38065 * 7 5 4 33 33 H 1.07998 * 120.00664 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.94739 * 180.25441 * 10 9 8 35 35 H 1.08006 * 119.93743 * 179.76640 * 11 10 9 36 36 H 1.08001 * 120.05301 * 180.02562 * 14 12 11 37 37 H 1.00905 * 111.00083 * 208.94967 * 15 2 1 38 38 H 1.09008 * 109.46984 * 299.99309 * 16 15 2 39 39 H 1.09004 * 109.47781 * 59.99614 * 16 15 2 40 40 H 1.08998 * 109.47589 * 299.99712 * 17 16 15 41 41 H 1.09001 * 109.47241 * 59.99784 * 17 16 15 42 42 H 1.08996 * 109.47041 * 300.00069 * 18 17 16 43 43 H 1.09001 * 109.46720 * 60.00022 * 18 17 16 44 44 H 0.96999 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1451 -0.0211 0.4440 7 7 4.2150 -1.1805 2.3342 8 6 5.6141 -1.1658 2.3436 9 6 6.3177 -2.2409 2.8716 10 6 7.6986 -2.2268 2.8756 11 6 8.3823 -1.1395 2.3639 12 6 7.6848 -0.0631 1.8418 13 9 8.3555 0.9983 1.3429 14 6 6.3014 -0.0744 1.8304 15 7 2.0197 -0.6925 -1.1994 16 6 2.0825 0.2226 -2.3469 17 6 2.5962 -0.5328 -3.5742 18 6 2.6611 0.4201 -4.7695 19 6 3.1677 -0.3239 -5.9781 20 1 3.4179 -1.3717 -5.9016 21 6 3.3117 0.3332 -7.1817 22 7 3.0075 1.6093 -7.2748 23 14 3.9390 -0.5892 -8.6802 24 1 3.0179 -1.7114 -8.9920 25 1 4.0033 0.3361 -9.8399 26 1 5.2951 -1.1253 -8.3995 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.7516 -1.7715 1.2055 31 1 1.6055 -0.2617 2.1369 32 1 3.7295 -1.5977 3.0630 33 1 5.7849 -3.0893 3.2751 34 1 8.2452 -3.0647 3.2826 35 1 9.4623 -1.1295 2.3718 36 1 5.7569 0.7646 1.4230 37 1 2.9174 -1.1205 -1.0288 38 1 1.0871 0.6164 -2.5525 39 1 2.7589 1.0463 -2.1182 40 1 3.5917 -0.9263 -3.3684 41 1 1.9202 -1.3566 -3.8030 42 1 1.6655 0.8132 -4.9752 43 1 3.3370 1.2442 -4.5408 44 1 3.1092 2.0716 -8.1214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178640316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:35 Heat of formation + Delta-G solvation = -96.245831 kcal Electronic energy + Delta-G solvation = -24587.211631 eV Core-core repulsion = 20838.146825 eV Total energy + Delta-G solvation = -3749.064807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98182 -41.75154 -39.68266 -38.06494 -35.97526 -35.79311 -34.10238 -31.83852 -31.51434 -30.70107 -28.70416 -27.74845 -24.72024 -24.15616 -23.55700 -22.07267 -22.00080 -21.01129 -19.32036 -18.52430 -18.32750 -17.43831 -17.22635 -16.95464 -16.71438 -16.68038 -16.56790 -16.43413 -15.68821 -15.53313 -15.18891 -14.67654 -14.39054 -14.24760 -14.10857 -13.63915 -13.53972 -13.45086 -12.98173 -12.88658 -12.86536 -12.73154 -12.66578 -12.59723 -12.41278 -12.19741 -11.94567 -11.52182 -11.48627 -11.41372 -11.10078 -10.92370 -10.58244 -9.86776 -9.40090 -9.27977 -8.22526 -6.34715 0.05183 0.18195 1.36941 1.41754 1.46748 1.49638 1.91277 2.39114 2.61475 3.09743 3.23482 3.23746 3.58427 3.78317 3.87711 4.03358 4.12297 4.20415 4.28893 4.34471 4.35708 4.47413 4.56174 4.63117 4.70838 4.79825 4.88497 4.93573 5.01346 5.08280 5.09935 5.16622 5.19789 5.20163 5.26805 5.36738 5.45769 5.47251 5.69669 5.81009 5.91557 6.07145 6.23955 6.33423 6.44534 6.81265 7.06703 7.34356 8.89661 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003044 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.495981 B = 9196.097093 C =10973.907395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.025 0.975 4 C -0.128 4.128 5 C 0.503 3.497 6 O -0.563 6.563 7 N -0.656 5.656 8 C 0.163 3.837 9 C -0.143 4.143 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.083 3.917 13 F -0.156 7.156 14 C -0.187 4.187 15 N -0.677 5.677 16 C 0.078 3.922 17 C -0.089 4.089 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.059 0.941 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.134 0.866 31 H 0.144 0.856 32 H 0.436 0.564 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.336 0.664 38 H 0.065 0.935 39 H 0.004 0.996 40 H 0.037 0.963 41 H 0.058 0.942 42 H -0.006 1.006 43 H -0.018 1.018 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -10.986 30.885 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.043 0.957 4 C -0.168 4.168 5 C 0.293 3.707 6 O -0.441 6.441 7 N -0.303 5.303 8 C 0.068 3.932 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.191 4.191 12 C 0.064 3.936 13 F -0.135 7.135 14 C -0.209 4.209 15 N -0.309 5.309 16 C -0.051 4.051 17 C -0.127 4.127 18 C -0.010 4.010 19 C -0.585 4.585 20 H 0.078 0.922 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.193 1.193 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.277 0.723 33 H 0.190 0.810 34 H 0.194 0.806 35 H 0.170 0.830 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.022 0.978 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.013 0.987 43 H 0.000 1.000 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.020 -10.631 29.973 31.867 hybrid contribution 1.196 1.186 -0.945 1.931 sum 3.216 -9.445 29.029 30.696 Atomic orbital electron populations 1.21765 0.92330 1.03138 1.01899 1.21443 0.96887 0.95435 0.88657 0.95687 1.21971 0.88007 1.06131 1.00646 1.21719 0.91953 0.76801 0.80182 1.90807 1.71080 1.42028 1.40172 1.43420 1.03735 1.58213 1.24974 1.17633 0.83792 0.93195 0.98569 1.21419 0.94822 0.97196 1.02831 1.21302 0.93576 0.97509 0.95822 1.21469 1.02052 0.93448 1.02143 1.17940 0.90051 0.86016 0.99607 1.91463 1.80584 1.55721 1.85721 1.21193 0.93056 1.00745 1.05862 1.60803 1.33135 1.32560 1.04372 1.21751 0.99155 0.93390 0.90827 1.21346 0.99137 0.98434 0.93825 1.18943 0.94757 0.94224 0.93074 1.21663 1.44111 0.96910 0.95780 0.92229 1.26071 0.95539 0.95845 1.02623 1.70109 1.49700 1.10796 1.26899 0.85425 0.79155 0.78402 0.77614 1.18716 1.20493 1.19319 0.90876 0.89813 0.94375 0.84799 0.83807 0.72348 0.81032 0.80551 0.82954 0.86352 0.84522 0.91683 0.97820 0.94447 0.92279 0.98725 0.99997 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.42 71.98 0.68 -1.89 16 2 C 0.09 2.04 2.21 44.92 0.10 2.14 16 3 H 0.02 0.73 7.61 -2.38 -0.02 0.71 16 4 C -0.13 -1.75 5.30 29.84 0.16 -1.59 16 5 C 0.50 10.24 7.14 87.65 0.63 10.87 16 6 O -0.56 -18.33 12.02 -3.05 -0.04 -18.36 16 7 N -0.66 -8.81 5.34 -303.53 -1.62 -10.43 16 8 C 0.16 2.98 6.30 38.15 0.24 3.22 16 9 C -0.14 -1.61 9.96 22.40 0.22 -1.38 16 10 C -0.06 -0.70 10.04 22.24 0.22 -0.48 16 11 C -0.17 -2.94 10.02 22.33 0.22 -2.72 16 12 C 0.08 2.11 7.30 22.36 0.16 2.28 16 13 F -0.16 -4.64 17.27 44.97 0.78 -3.86 16 14 C -0.19 -4.93 8.68 22.43 0.19 -4.74 16 15 N -0.68 -21.54 6.18 -491.55 -3.04 -24.58 16 16 C 0.08 3.18 5.48 86.30 0.47 3.65 16 17 C -0.09 -4.24 5.41 30.60 0.17 -4.08 16 18 C 0.03 1.62 4.97 29.85 0.15 1.77 16 19 C -0.55 -33.69 9.11 25.60 0.23 -33.46 16 20 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 21 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 22 N -0.93 -60.22 13.29 21.45 0.28 -59.94 16 23 Si 0.97 46.66 29.54 68.60 2.03 48.69 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.91 7.45 -2.38 -0.02 0.89 16 30 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.44 1.59 8.82 -92.71 -0.82 0.77 16 33 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.12 3.85 6.22 -2.91 -0.02 3.83 16 37 H 0.34 11.25 6.50 -89.69 -0.58 10.66 16 38 H 0.06 2.60 7.44 -2.38 -0.02 2.58 16 39 H 0.00 0.16 8.06 -2.39 -0.02 0.14 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 44 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -83.73 369.21 2.32 -81.41 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.39 Total: 13.22 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.31 Total: -26.15 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.37 Total: -94.95 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.86 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -83.73 2.32 -81.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.834 kcal (2) G-P(sol) polarization free energy of solvation -83.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds