Wall clock time and date at job start Tue Mar 31 2020 09:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47187 * 2 1 4 4 C 1.52997 * 109.47372 * 239.99855 * 2 1 3 5 5 C 1.50700 * 109.47216 * 175.00052 * 4 2 1 6 6 O 1.21284 * 120.00059 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99951 * 180.02562 * 5 4 2 8 8 C 1.39923 * 120.00052 * 184.63404 * 7 5 4 9 9 C 1.38912 * 120.05343 * 324.64735 * 8 7 5 10 10 C 1.38106 * 119.97928 * 180.27898 * 9 8 7 11 11 C 1.38266 * 120.09067 * 359.97438 * 10 9 8 12 12 C 1.38484 * 120.11847 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.98785 * 180.02562 * 12 11 10 14 14 C 1.38356 * 120.02107 * 359.97438 * 12 11 10 15 15 N 1.46897 * 109.47143 * 120.00134 * 2 1 3 16 16 C 1.46908 * 111.00124 * 275.00321 * 15 2 1 17 17 C 1.52995 * 109.47408 * 179.97438 * 16 15 2 18 18 C 1.52997 * 109.47239 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00123 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99916 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99642 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47328 * 60.00302 * 23 21 19 25 25 H 1.48503 * 109.46708 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47544 * 299.99854 * 23 21 19 27 27 H 1.08994 * 109.47265 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.47278 * 60.00285 * 1 2 3 29 29 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46848 * 55.00027 * 4 2 1 31 31 H 1.08996 * 109.47651 * 295.00316 * 4 2 1 32 32 H 0.96996 * 120.00311 * 4.62239 * 7 5 4 33 33 H 1.07998 * 120.01139 * 0.25052 * 9 8 7 34 34 H 1.07995 * 119.95410 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.93699 * 180.02562 * 11 10 9 36 36 H 1.07998 * 120.04426 * 180.02562 * 14 12 11 37 37 H 1.00895 * 111.00283 * 151.04552 * 15 2 1 38 38 H 1.09005 * 109.46509 * 299.99901 * 16 15 2 39 39 H 1.09000 * 109.46858 * 59.99493 * 16 15 2 40 40 H 1.09005 * 109.47254 * 300.00104 * 17 16 15 41 41 H 1.09008 * 109.47158 * 59.99720 * 17 16 15 42 42 H 1.08997 * 109.47520 * 300.00059 * 18 17 16 43 43 H 1.09006 * 109.46927 * 60.00547 * 18 17 16 44 44 H 0.96996 * 119.99692 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1451 -0.0211 -0.4439 7 7 4.2149 -1.1797 -2.3347 8 6 5.6140 -1.1653 -2.3440 9 6 6.3019 -0.0713 -1.8343 10 6 7.6828 -0.0562 -1.8495 11 6 8.3821 -1.1290 -2.3709 12 6 7.7003 -2.2216 -2.8800 13 9 8.3863 -3.2687 -3.3884 14 6 6.3169 -2.2417 -2.8672 15 7 2.0196 -0.6925 1.1994 16 6 2.0824 0.2226 2.3470 17 6 2.5949 -0.5332 3.5745 18 6 2.6608 0.4200 4.7695 19 6 3.1651 -0.3246 5.9788 20 1 3.4141 -1.3727 5.9025 21 6 3.3086 0.3323 7.1825 22 7 3.0049 1.6085 7.2754 23 14 3.9344 -0.5905 8.6812 24 1 5.2904 -1.1272 8.4016 25 1 3.9982 0.3347 9.8411 26 1 3.0125 -1.7123 8.9924 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2617 -2.1369 31 1 1.7517 -1.7715 -1.2056 32 1 3.7294 -1.5962 -3.0638 33 1 5.7570 0.7674 -1.4267 34 1 8.2171 0.7946 -1.4535 35 1 9.4620 -1.1148 -2.3812 36 1 5.7849 -3.0938 -3.2638 37 1 2.9172 -1.1205 1.0287 38 1 2.7588 1.0462 2.1182 39 1 1.0869 0.6163 2.5525 40 1 1.9182 -1.3566 3.8030 41 1 3.5903 -0.9273 3.3692 42 1 3.3378 1.2431 4.5408 43 1 1.6656 0.8143 4.9750 44 1 3.1062 2.0707 8.1221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178640333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:38 Heat of formation + Delta-G solvation = -72.298871 kcal Electronic energy + Delta-G solvation = -24438.818939 eV Core-core repulsion = 20690.792551 eV Total energy + Delta-G solvation = -3748.026388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18853 -40.97273 -38.87636 -36.86445 -35.08083 -34.04322 -32.26373 -31.01882 -30.41334 -29.46572 -27.93600 -25.81364 -23.52294 -23.23152 -22.37614 -21.10349 -20.41184 -19.80269 -18.49243 -17.66362 -16.72820 -16.49941 -16.22769 -15.91259 -15.86951 -15.71708 -15.41700 -14.66587 -14.49770 -14.27576 -14.05913 -13.73973 -13.45065 -12.86504 -12.84383 -12.42140 -12.41172 -12.19534 -12.09375 -11.79178 -11.70592 -11.56277 -11.30372 -10.93349 -10.73341 -10.66772 -10.47667 -10.41970 -10.07002 -9.57267 -9.23290 -9.16778 -8.97097 -8.57315 -8.26265 -8.04830 -5.91811 -3.93395 0.78090 0.87764 2.21828 2.56315 3.31517 3.39105 3.42522 3.45843 3.98670 4.25313 4.38835 4.46299 4.54582 4.60107 4.66589 4.81959 5.04940 5.07298 5.10584 5.21536 5.43717 5.47174 5.55664 5.62320 5.74830 5.77531 5.86457 5.96066 6.00271 6.02185 6.11421 6.12190 6.30417 6.50681 6.61652 6.85579 6.89568 6.92793 7.25888 7.47233 7.68066 7.77832 7.81844 7.95265 8.09663 8.53387 9.13675 9.69890 11.19751 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002834 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.426167 B = 9875.970470 C =11663.258032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.094 3.906 3 H 0.051 0.949 4 C -0.142 4.142 5 C 0.510 3.490 6 O -0.506 6.506 7 N -0.677 5.677 8 C 0.176 3.824 9 C -0.130 4.130 10 C -0.070 4.070 11 C -0.170 4.170 12 C 0.115 3.885 13 F -0.139 7.139 14 C -0.184 4.184 15 N -0.684 5.684 16 C 0.064 3.936 17 C -0.106 4.106 18 C 0.023 3.977 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.340 0.660 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -5.064 -27.702 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.016 4.016 3 H 0.069 0.931 4 C -0.182 4.182 5 C 0.299 3.701 6 O -0.379 6.379 7 N -0.323 5.323 8 C 0.081 3.919 9 C -0.150 4.150 10 C -0.089 4.089 11 C -0.189 4.189 12 C 0.096 3.904 13 F -0.117 7.117 14 C -0.205 4.205 15 N -0.317 5.317 16 C -0.065 4.065 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.556 4.556 20 H 0.072 0.928 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.249 0.751 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.431 -4.767 -26.762 27.292 hybrid contribution 1.065 -0.402 0.169 1.150 sum 3.495 -5.169 -26.593 27.316 Atomic orbital electron populations 1.21793 0.94100 1.02363 1.01493 1.21270 0.95642 0.96400 0.88320 0.93137 1.21992 0.90001 1.04810 1.01429 1.21180 0.90866 0.77658 0.80419 1.90788 1.69890 1.39472 1.37739 1.43614 1.04353 1.59241 1.25043 1.17435 0.82941 0.93198 0.98339 1.21432 0.94417 0.98221 1.00954 1.20978 0.93611 0.97850 0.96478 1.21173 1.01098 0.93872 1.02761 1.17332 0.89300 0.85412 0.98405 1.91510 1.79613 1.55748 1.84859 1.20777 0.92729 0.99256 1.07763 1.60790 1.33571 1.33440 1.03857 1.22084 1.00073 0.93906 0.90438 1.21595 0.99200 0.99338 0.94223 1.19048 0.96991 0.94255 0.91142 1.21243 1.43411 0.96336 0.94581 0.92784 1.25028 0.95711 0.94887 0.98915 1.69961 1.49053 1.08983 1.25718 0.86662 0.79442 0.79601 0.82319 1.20290 1.21341 1.20248 0.91944 0.92946 0.91971 0.87965 0.87474 0.75127 0.83568 0.84435 0.84618 0.84458 0.84072 0.95475 0.91829 0.92821 0.93812 0.96821 0.96669 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.41 37.16 0.35 -1.10 16 2 C 0.09 1.12 2.21 -67.72 -0.15 0.97 16 3 H 0.05 0.68 7.61 -51.93 -0.40 0.29 16 4 C -0.14 -1.14 5.30 -27.88 -0.15 -1.28 16 5 C 0.51 5.20 7.14 -10.99 -0.08 5.12 16 6 O -0.51 -7.35 12.03 5.55 0.07 -7.28 16 7 N -0.68 -5.20 5.34 -9.87 -0.05 -5.25 16 8 C 0.18 1.69 6.29 -83.71 -0.53 1.17 16 9 C -0.13 -1.40 8.70 -39.38 -0.34 -1.74 16 10 C -0.07 -0.66 10.04 -39.62 -0.40 -1.05 16 11 C -0.17 -1.53 10.02 -39.48 -0.40 -1.92 16 12 C 0.12 1.12 7.30 -39.45 -0.29 0.83 16 13 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 14 C -0.18 -1.63 9.95 -39.33 -0.39 -2.02 16 15 N -0.68 -10.60 6.18 -106.73 -0.66 -11.26 16 16 C 0.06 1.20 5.48 -3.82 -0.02 1.18 16 17 C -0.11 -2.37 5.41 -26.74 -0.14 -2.51 16 18 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -15.39 9.11 -34.44 -0.31 -15.71 16 20 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 23 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 1.64 8.82 -40.82 -0.36 1.28 16 33 H 0.15 1.76 6.23 -52.49 -0.33 1.44 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.34 5.50 6.50 -39.29 -0.26 5.24 16 38 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 39 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -34.34 369.22 -9.13 -43.47 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.72 Total: 1.93 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -3.08 Total: -16.02 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.02 Total: -43.70 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.07 Total: -7.28 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.34 -9.13 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.824 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds