Wall clock time and date at job start Tue Mar 31 2020 09:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47187 * 2 1 4 4 C 1.52997 * 109.47372 * 239.99855 * 2 1 3 5 5 C 1.50700 * 109.47216 * 175.00052 * 4 2 1 6 6 O 1.21284 * 120.00059 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99951 * 180.02562 * 5 4 2 8 8 C 1.39923 * 120.00052 * 184.63404 * 7 5 4 9 9 C 1.38912 * 120.05343 * 324.64735 * 8 7 5 10 10 C 1.38106 * 119.97928 * 180.27898 * 9 8 7 11 11 C 1.38266 * 120.09067 * 359.97438 * 10 9 8 12 12 C 1.38484 * 120.11847 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.98785 * 180.02562 * 12 11 10 14 14 C 1.38356 * 120.02107 * 359.97438 * 12 11 10 15 15 N 1.46897 * 109.47143 * 120.00134 * 2 1 3 16 16 C 1.46908 * 111.00124 * 275.00321 * 15 2 1 17 17 C 1.52995 * 109.47408 * 179.97438 * 16 15 2 18 18 C 1.52997 * 109.47239 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00123 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99916 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99642 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47328 * 60.00302 * 23 21 19 25 25 H 1.48503 * 109.46708 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47544 * 299.99854 * 23 21 19 27 27 H 1.08994 * 109.47265 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.47278 * 60.00285 * 1 2 3 29 29 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46848 * 55.00027 * 4 2 1 31 31 H 1.08996 * 109.47651 * 295.00316 * 4 2 1 32 32 H 0.96996 * 120.00311 * 4.62239 * 7 5 4 33 33 H 1.07998 * 120.01139 * 0.25052 * 9 8 7 34 34 H 1.07995 * 119.95410 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.93699 * 180.02562 * 11 10 9 36 36 H 1.07998 * 120.04426 * 180.02562 * 14 12 11 37 37 H 1.00895 * 111.00283 * 151.04552 * 15 2 1 38 38 H 1.09005 * 109.46509 * 299.99901 * 16 15 2 39 39 H 1.09000 * 109.46858 * 59.99493 * 16 15 2 40 40 H 1.09005 * 109.47254 * 300.00104 * 17 16 15 41 41 H 1.09008 * 109.47158 * 59.99720 * 17 16 15 42 42 H 1.08997 * 109.47520 * 300.00059 * 18 17 16 43 43 H 1.09006 * 109.46927 * 60.00547 * 18 17 16 44 44 H 0.96996 * 119.99692 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1451 -0.0211 -0.4439 7 7 4.2149 -1.1797 -2.3347 8 6 5.6140 -1.1653 -2.3440 9 6 6.3019 -0.0713 -1.8343 10 6 7.6828 -0.0562 -1.8495 11 6 8.3821 -1.1290 -2.3709 12 6 7.7003 -2.2216 -2.8800 13 9 8.3863 -3.2687 -3.3884 14 6 6.3169 -2.2417 -2.8672 15 7 2.0196 -0.6925 1.1994 16 6 2.0824 0.2226 2.3470 17 6 2.5949 -0.5332 3.5745 18 6 2.6608 0.4200 4.7695 19 6 3.1651 -0.3246 5.9788 20 1 3.4141 -1.3727 5.9025 21 6 3.3086 0.3323 7.1825 22 7 3.0049 1.6085 7.2754 23 14 3.9344 -0.5905 8.6812 24 1 5.2904 -1.1272 8.4016 25 1 3.9982 0.3347 9.8411 26 1 3.0125 -1.7123 8.9924 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2617 -2.1369 31 1 1.7517 -1.7715 -1.2056 32 1 3.7294 -1.5962 -3.0638 33 1 5.7570 0.7674 -1.4267 34 1 8.2171 0.7946 -1.4535 35 1 9.4620 -1.1148 -2.3812 36 1 5.7849 -3.0938 -3.2638 37 1 2.9172 -1.1205 1.0287 38 1 2.7588 1.0462 2.1182 39 1 1.0869 0.6163 2.5525 40 1 1.9182 -1.3566 3.8030 41 1 3.5903 -0.9273 3.3692 42 1 3.3378 1.2431 4.5408 43 1 1.6656 0.8143 4.9750 44 1 3.1062 2.0707 8.1221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178640333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:38 Heat of formation + Delta-G solvation = -94.780594 kcal Electronic energy + Delta-G solvation = -24439.793820 eV Core-core repulsion = 20690.792551 eV Total energy + Delta-G solvation = -3749.001269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94773 -41.74769 -39.67614 -38.03771 -35.96842 -35.79547 -34.08058 -31.82825 -31.54509 -30.67467 -28.68828 -27.72903 -24.64922 -24.02883 -23.83738 -22.03256 -21.93359 -20.99196 -19.22499 -18.50534 -18.42540 -17.44503 -17.27922 -16.89070 -16.66868 -16.63114 -16.53497 -16.41333 -15.57741 -15.55099 -15.21613 -14.75321 -14.36690 -14.20547 -14.09112 -13.61679 -13.55369 -13.44638 -13.13080 -12.96342 -12.84090 -12.71826 -12.65507 -12.41307 -12.36198 -12.18295 -11.92553 -11.49827 -11.47889 -11.39196 -11.08210 -10.92688 -10.56689 -9.89377 -9.37387 -9.27940 -8.21225 -6.33025 0.05367 0.13774 1.38160 1.42463 1.47254 1.50370 1.88973 2.40142 2.59244 3.11170 3.26165 3.26639 3.56940 3.77169 3.83080 3.99952 4.10219 4.23307 4.30307 4.33957 4.36948 4.42635 4.58365 4.64896 4.73412 4.81077 4.90342 4.93246 4.96322 5.03950 5.11640 5.16978 5.18905 5.22450 5.28904 5.39128 5.47348 5.49331 5.72289 5.83097 5.88936 6.10140 6.26068 6.32913 6.47614 6.83023 7.05703 7.35984 8.90856 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002834 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.426167 B = 9875.970470 C =11663.258032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.030 0.970 4 C -0.130 4.130 5 C 0.507 3.493 6 O -0.557 6.557 7 N -0.659 5.659 8 C 0.166 3.834 9 C -0.150 4.150 10 C -0.077 4.077 11 C -0.171 4.171 12 C 0.102 3.898 13 F -0.143 7.143 14 C -0.178 4.178 15 N -0.679 5.679 16 C 0.079 3.921 17 C -0.090 4.090 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.432 0.568 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.337 0.663 38 H 0.008 0.992 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.038 0.962 42 H -0.016 1.016 43 H -0.006 1.006 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -7.015 -29.062 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.169 4.169 5 C 0.297 3.703 6 O -0.434 6.434 7 N -0.306 5.306 8 C 0.071 3.929 9 C -0.170 4.170 10 C -0.095 4.095 11 C -0.190 4.190 12 C 0.082 3.918 13 F -0.121 7.121 14 C -0.199 4.199 15 N -0.311 5.311 16 C -0.050 4.050 17 C -0.128 4.128 18 C -0.010 4.010 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.273 0.727 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.003 0.997 43 H 0.012 0.988 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.018 -6.748 -28.187 29.054 hybrid contribution 1.195 0.251 0.534 1.333 sum 3.213 -6.497 -27.653 28.587 Atomic orbital electron populations 1.21768 0.92535 1.03011 1.01921 1.21422 0.96741 0.95588 0.88501 0.95224 1.21973 0.88176 1.05976 1.00782 1.21627 0.91798 0.76818 0.80019 1.90788 1.70956 1.41868 1.39810 1.43436 1.03687 1.58411 1.25029 1.17520 0.83822 0.93137 0.98438 1.21456 0.95170 0.98484 1.01913 1.21163 0.93299 0.98579 0.96476 1.21387 1.02086 0.93435 1.02087 1.17544 0.89850 0.85548 0.98848 1.91501 1.79740 1.55908 1.84969 1.20956 0.92528 0.99516 1.06889 1.60781 1.33218 1.32709 1.04432 1.21745 0.99203 0.93419 0.90683 1.21347 0.99155 0.98386 0.93896 1.18939 0.94770 0.94260 0.92993 1.21665 1.44111 0.96837 0.95796 0.92336 1.26036 0.95563 0.95831 1.02526 1.70100 1.49720 1.10742 1.26873 0.85452 0.79167 0.78394 0.77749 1.19286 1.20517 1.18906 0.94298 0.89827 0.91127 0.83821 0.85196 0.72750 0.85472 0.83115 0.82894 0.82093 0.84467 0.97390 0.91809 0.92549 0.94336 0.99716 0.98807 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.41 71.98 0.68 -1.83 16 2 C 0.09 1.98 2.21 44.91 0.10 2.08 16 3 H 0.03 0.81 7.61 -2.39 -0.02 0.79 16 4 C -0.13 -1.69 5.30 29.85 0.16 -1.53 16 5 C 0.51 9.69 7.14 87.66 0.63 10.31 16 6 O -0.56 -16.57 12.03 -3.04 -0.04 -16.60 16 7 N -0.66 -8.85 5.34 -303.53 -1.62 -10.47 16 8 C 0.17 3.04 6.29 38.15 0.24 3.28 16 9 C -0.15 -3.28 8.70 22.40 0.19 -3.09 16 10 C -0.08 -1.43 10.04 22.24 0.22 -1.21 16 11 C -0.17 -2.94 10.02 22.34 0.22 -2.72 16 12 C 0.10 1.86 7.30 22.36 0.16 2.02 16 13 F -0.14 -2.73 17.27 44.97 0.78 -1.96 16 14 C -0.18 -2.85 9.95 22.43 0.22 -2.63 16 15 N -0.68 -20.90 6.18 -491.57 -3.04 -23.94 16 16 C 0.08 3.09 5.48 86.30 0.47 3.57 16 17 C -0.09 -4.16 5.41 30.59 0.17 -3.99 16 18 C 0.03 1.60 4.97 29.85 0.15 1.75 16 19 C -0.55 -33.16 9.11 25.60 0.23 -32.93 16 20 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -59.30 13.29 21.45 0.28 -59.01 16 23 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 27 H 0.04 0.90 7.45 -2.39 -0.02 0.89 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.43 2.06 8.82 -92.71 -0.82 1.24 16 33 H 0.13 3.28 6.23 -2.91 -0.02 3.26 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.34 10.86 6.50 -89.70 -0.58 10.28 16 38 H 0.01 0.34 8.06 -2.38 -0.02 0.32 16 39 H 0.06 2.48 7.44 -2.39 -0.02 2.46 16 40 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 44 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.32 369.22 2.32 -75.00 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.39 Total: 15.43 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.31 Total: -26.57 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -4.37 Total: -93.42 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.04 Total: -16.60 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.32 2.32 -75.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.777 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds