Wall clock time and date at job start Tue Mar 31 2020 09:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46987 * 2 1 4 4 C 1.50695 * 109.47192 * 239.99947 * 2 1 3 5 5 H 1.08001 * 120.00485 * 245.47166 * 4 2 1 6 6 C 1.37881 * 119.99866 * 65.47353 * 4 2 1 7 7 N 1.31508 * 120.00069 * 9.71471 * 6 4 2 8 8 Si 1.86803 * 119.99851 * 189.72045 * 6 4 2 9 9 H 1.48504 * 109.47431 * 84.99081 * 8 6 4 10 10 H 1.48501 * 109.46997 * 204.98938 * 8 6 4 11 11 H 1.48501 * 109.47047 * 324.99032 * 8 6 4 12 12 N 1.46900 * 109.47210 * 120.00226 * 2 1 3 13 13 C 1.46898 * 110.99906 * 58.95142 * 12 2 1 14 14 C 1.46906 * 110.99673 * 294.99952 * 12 2 1 15 15 C 1.50703 * 109.47012 * 189.99729 * 14 12 2 16 16 O 1.21279 * 119.99760 * 0.02562 * 15 14 12 17 17 N 1.34778 * 119.99796 * 180.02562 * 15 14 12 18 18 C 1.46497 * 120.00201 * 359.97438 * 17 15 14 19 19 C 1.46500 * 119.99772 * 180.02562 * 17 15 14 20 20 C 1.50707 * 109.47076 * 89.99635 * 19 17 15 21 21 C 1.38243 * 119.97709 * 269.72482 * 20 19 17 22 22 C 1.38194 * 120.02515 * 179.72646 * 21 20 19 23 23 C 1.38460 * 119.97347 * 0.57224 * 22 21 20 24 24 F 1.35102 * 120.02365 * 179.68605 * 23 22 21 25 25 C 1.38454 * 119.95123 * 359.70207 * 23 22 21 26 26 C 1.38204 * 119.97103 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.46916 * 181.81446 * 1 2 3 28 28 H 1.08993 * 109.47283 * 301.81892 * 1 2 3 29 29 H 1.08997 * 109.46845 * 61.81641 * 1 2 3 30 30 H 0.97003 * 120.00317 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47706 * 296.04362 * 13 12 2 32 32 H 1.08994 * 109.46917 * 56.05060 * 13 12 2 33 33 H 1.09001 * 109.47164 * 176.04997 * 13 12 2 34 34 H 1.08997 * 109.47266 * 309.99793 * 14 12 2 35 35 H 1.09004 * 109.46874 * 69.99857 * 14 12 2 36 36 H 1.09006 * 109.46520 * 90.00319 * 18 17 15 37 37 H 1.08993 * 109.47338 * 210.00454 * 18 17 15 38 38 H 1.08994 * 109.47256 * 330.00739 * 18 17 15 39 39 H 1.08996 * 109.47286 * 209.99579 * 19 17 15 40 40 H 1.09000 * 109.47028 * 329.99883 * 19 17 15 41 41 H 1.07999 * 119.98614 * 359.97438 * 21 20 19 42 42 H 1.08001 * 120.00997 * 180.25983 * 22 21 20 43 43 H 1.07998 * 120.01554 * 179.97438 * 25 23 22 44 44 H 1.08000 * 119.98396 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1339 6 6 1.7948 -0.1772 -2.4796 7 7 1.3027 1.0370 -2.5935 8 14 2.1720 -1.1796 -4.0101 9 1 1.0173 -2.0596 -4.3225 10 1 2.4200 -0.2641 -5.1527 11 1 3.3785 -2.0119 -3.7718 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5572 3.6006 16 8 3.1161 -1.4986 3.4435 17 7 2.1795 -0.0442 4.8326 18 6 1.2761 1.0933 5.0222 19 6 2.8790 -0.6236 5.9820 20 6 4.2019 0.0738 6.1687 21 6 5.3327 -0.4096 5.5372 22 6 6.5452 0.2323 5.7031 23 6 6.6295 1.3532 6.5117 24 9 7.8156 1.9779 6.6796 25 6 5.4975 1.8331 7.1482 26 6 4.2847 1.1934 6.9754 27 1 -0.3633 -1.0272 0.0325 28 1 -0.3633 0.5418 0.8732 29 1 -0.3633 0.4854 -0.9058 30 1 1.1352 1.4120 -3.4723 31 1 0.4420 -2.0732 1.3347 32 1 1.8168 -2.5950 0.3318 33 1 1.9617 -2.5869 2.1058 34 1 1.9298 1.0870 2.3125 35 1 0.5722 -0.0345 2.5725 36 1 0.2681 0.7278 5.2190 37 1 1.6172 1.6913 5.8672 38 1 1.2706 1.7070 4.1214 39 1 2.2719 -0.4970 6.8784 40 1 3.0498 -1.6856 5.8059 41 1 5.2677 -1.2870 4.9108 42 1 7.4276 -0.1431 5.2063 43 1 5.5621 2.7070 7.7794 44 1 3.4016 1.5673 7.4721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268326998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:48 Heat of formation + Delta-G solvation = -36.932548 kcal Electronic energy + Delta-G solvation = -25478.724088 eV Core-core repulsion = 21732.231298 eV Total energy + Delta-G solvation = -3746.492790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03403 -40.10586 -38.89453 -36.77751 -35.37682 -32.68566 -31.76706 -31.29695 -29.21657 -27.78321 -27.16881 -25.51834 -25.10691 -23.67567 -23.18288 -21.71089 -19.71032 -18.70613 -17.81804 -17.03025 -16.36886 -16.28471 -16.17156 -15.86195 -15.67380 -15.06385 -14.77890 -14.24024 -14.02108 -13.78330 -13.70090 -13.46764 -13.40196 -12.91184 -12.63209 -12.57258 -12.40239 -12.25512 -11.99455 -11.89699 -11.64568 -11.12310 -10.98790 -10.90962 -10.84157 -10.76555 -10.48821 -10.10801 -9.91387 -9.35682 -9.26164 -8.95880 -8.74685 -8.61691 -8.33261 -7.13593 -6.02898 -4.01422 0.91039 1.08160 2.92587 3.00916 3.33607 3.39717 3.44078 3.56294 4.09844 4.43575 4.47860 4.60860 4.72935 4.76871 4.99168 5.08982 5.09986 5.14724 5.30579 5.32711 5.40375 5.55963 5.59549 5.77794 5.79455 5.83283 5.86776 5.94658 6.11357 6.32185 6.36973 6.42064 6.51790 6.61881 6.72750 6.73434 6.96913 7.02210 7.33902 7.47202 7.57846 7.85923 8.08822 8.33161 8.47771 8.61374 9.03900 9.61743 11.07203 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.003140 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.724174 B = 8914.706863 C = 9607.376060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.039 3.961 15 C 0.518 3.482 16 O -0.515 6.515 17 N -0.623 5.623 18 C 0.079 3.921 19 C 0.157 3.843 20 C -0.115 4.115 21 C -0.062 4.062 22 C -0.154 4.154 23 C 0.097 3.903 24 F -0.143 7.143 25 C -0.160 4.160 26 C -0.080 4.080 27 H 0.034 0.966 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.260 0.740 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 1.372 21.480 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.240 5.240 13 C -0.118 4.118 14 C -0.092 4.092 15 C 0.306 3.694 16 O -0.389 6.389 17 N -0.359 5.359 18 C -0.064 4.064 19 C 0.035 3.965 20 C -0.117 4.117 21 C -0.081 4.081 22 C -0.173 4.173 23 C 0.078 3.922 24 F -0.121 7.121 25 C -0.179 4.179 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.546 0.991 21.197 21.373 hybrid contribution -0.581 -0.003 -0.813 0.999 sum 1.965 0.988 20.384 20.503 Atomic orbital electron populations 1.22380 1.01293 0.99085 0.99935 1.19381 0.89203 0.95110 0.85950 0.93621 1.21076 1.34974 1.08263 0.89599 0.91748 1.24908 0.95473 0.94694 0.98957 1.69959 1.45610 1.13909 1.23753 0.86590 0.78742 0.80071 0.82519 1.20711 1.21395 1.19832 1.62111 1.59483 1.02010 1.00386 1.22378 0.95869 0.90876 1.02701 1.21966 0.97214 0.99425 0.90625 1.21097 0.81789 0.83092 0.83399 1.90612 1.36576 1.27526 1.84151 1.48011 1.46282 1.34460 1.07180 1.21791 0.93101 0.88548 1.02993 1.20248 0.89106 0.98299 0.88874 1.20369 0.96183 0.96970 0.98170 1.21167 0.90844 0.99559 0.96510 1.21225 0.99904 0.95888 1.00296 1.17777 0.81230 0.93678 0.99541 1.91494 1.44758 1.81669 1.94200 1.21078 0.92051 1.02113 1.02616 1.20880 0.96895 0.94460 0.97658 0.94694 0.97066 0.91021 0.93009 0.97310 0.90784 0.92029 0.88806 0.92930 0.92586 0.91403 0.90607 0.89829 0.88868 0.84100 0.84687 0.84913 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 8.36 37.16 0.31 -3.55 16 2 C 0.21 5.22 2.21 -68.86 -0.15 5.06 16 3 H 0.05 1.25 7.98 -51.93 -0.41 0.84 16 4 C -0.50 -13.80 7.93 -34.44 -0.27 -14.07 16 5 H 0.06 1.81 6.57 -52.49 -0.35 1.46 16 6 C 0.06 1.69 5.18 -17.82 -0.09 1.60 16 7 N -0.89 -25.44 12.17 55.43 0.67 -24.77 16 8 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -11.37 4.48 -237.73 -1.06 -12.44 16 13 C 0.03 0.63 8.45 60.06 0.51 1.13 16 14 C 0.04 0.69 3.44 -4.97 -0.02 0.67 16 15 C 0.52 8.38 7.40 -10.98 -0.08 8.30 16 16 O -0.51 -9.85 13.44 5.56 0.07 -9.77 16 17 N -0.62 -7.39 2.86 -182.96 -0.52 -7.91 16 18 C 0.08 0.68 10.24 59.85 0.61 1.29 16 19 C 0.16 1.58 5.53 -5.19 -0.03 1.55 16 20 C -0.12 -1.22 5.46 -104.61 -0.57 -1.80 16 21 C -0.06 -0.75 9.70 -39.60 -0.38 -1.14 16 22 C -0.15 -1.80 10.03 -39.52 -0.40 -2.20 16 23 C 0.10 1.12 7.30 -39.42 -0.29 0.83 16 24 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 25 C -0.16 -1.55 10.03 -39.51 -0.40 -1.94 16 26 C -0.08 -0.72 9.70 -39.59 -0.38 -1.10 16 27 H 0.03 0.78 6.38 -51.93 -0.33 0.45 16 28 H 0.01 0.21 6.84 -51.93 -0.36 -0.14 16 29 H 0.07 1.82 6.87 -51.93 -0.36 1.46 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.01 0.17 6.47 -51.93 -0.34 -0.17 16 32 H 0.07 1.65 6.31 -51.93 -0.33 1.32 16 33 H 0.06 1.24 5.88 -51.93 -0.31 0.94 16 34 H 0.09 1.59 7.26 -51.93 -0.38 1.21 16 35 H 0.05 0.86 6.94 -51.93 -0.36 0.50 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 38 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 39 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 40 H 0.09 1.05 7.36 -51.93 -0.38 0.66 16 41 H 0.14 1.85 7.60 -52.49 -0.40 1.45 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -31.45 357.67 -8.35 -39.80 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.29 Total: 0.30 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.63 Total: -5.36 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.91 Total: -45.12 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.45 -8.35 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268326998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.866 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds