Wall clock time and date at job start Tue Mar 31 2020 09:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46987 * 2 1 4 4 C 1.50695 * 109.47192 * 239.99947 * 2 1 3 5 5 H 1.08001 * 120.00485 * 245.47166 * 4 2 1 6 6 C 1.37881 * 119.99866 * 65.47353 * 4 2 1 7 7 N 1.31508 * 120.00069 * 9.71471 * 6 4 2 8 8 Si 1.86803 * 119.99851 * 189.72045 * 6 4 2 9 9 H 1.48504 * 109.47431 * 84.99081 * 8 6 4 10 10 H 1.48501 * 109.46997 * 204.98938 * 8 6 4 11 11 H 1.48501 * 109.47047 * 324.99032 * 8 6 4 12 12 N 1.46900 * 109.47210 * 120.00226 * 2 1 3 13 13 C 1.46898 * 110.99906 * 58.95142 * 12 2 1 14 14 C 1.46906 * 110.99673 * 294.99952 * 12 2 1 15 15 C 1.50703 * 109.47012 * 189.99729 * 14 12 2 16 16 O 1.21279 * 119.99760 * 0.02562 * 15 14 12 17 17 N 1.34778 * 119.99796 * 180.02562 * 15 14 12 18 18 C 1.46497 * 120.00201 * 359.97438 * 17 15 14 19 19 C 1.46500 * 119.99772 * 180.02562 * 17 15 14 20 20 C 1.50707 * 109.47076 * 89.99635 * 19 17 15 21 21 C 1.38243 * 119.97709 * 269.72482 * 20 19 17 22 22 C 1.38194 * 120.02515 * 179.72646 * 21 20 19 23 23 C 1.38460 * 119.97347 * 0.57224 * 22 21 20 24 24 F 1.35102 * 120.02365 * 179.68605 * 23 22 21 25 25 C 1.38454 * 119.95123 * 359.70207 * 23 22 21 26 26 C 1.38204 * 119.97103 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.46916 * 181.81446 * 1 2 3 28 28 H 1.08993 * 109.47283 * 301.81892 * 1 2 3 29 29 H 1.08997 * 109.46845 * 61.81641 * 1 2 3 30 30 H 0.97003 * 120.00317 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47706 * 296.04362 * 13 12 2 32 32 H 1.08994 * 109.46917 * 56.05060 * 13 12 2 33 33 H 1.09001 * 109.47164 * 176.04997 * 13 12 2 34 34 H 1.08997 * 109.47266 * 309.99793 * 14 12 2 35 35 H 1.09004 * 109.46874 * 69.99857 * 14 12 2 36 36 H 1.09006 * 109.46520 * 90.00319 * 18 17 15 37 37 H 1.08993 * 109.47338 * 210.00454 * 18 17 15 38 38 H 1.08994 * 109.47256 * 330.00739 * 18 17 15 39 39 H 1.08996 * 109.47286 * 209.99579 * 19 17 15 40 40 H 1.09000 * 109.47028 * 329.99883 * 19 17 15 41 41 H 1.07999 * 119.98614 * 359.97438 * 21 20 19 42 42 H 1.08001 * 120.00997 * 180.25983 * 22 21 20 43 43 H 1.07998 * 120.01554 * 179.97438 * 25 23 22 44 44 H 1.08000 * 119.98396 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1339 6 6 1.7948 -0.1772 -2.4796 7 7 1.3027 1.0370 -2.5935 8 14 2.1720 -1.1796 -4.0101 9 1 1.0173 -2.0596 -4.3225 10 1 2.4200 -0.2641 -5.1527 11 1 3.3785 -2.0119 -3.7718 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5572 3.6006 16 8 3.1161 -1.4986 3.4435 17 7 2.1795 -0.0442 4.8326 18 6 1.2761 1.0933 5.0222 19 6 2.8790 -0.6236 5.9820 20 6 4.2019 0.0738 6.1687 21 6 5.3327 -0.4096 5.5372 22 6 6.5452 0.2323 5.7031 23 6 6.6295 1.3532 6.5117 24 9 7.8156 1.9779 6.6796 25 6 5.4975 1.8331 7.1482 26 6 4.2847 1.1934 6.9754 27 1 -0.3633 -1.0272 0.0325 28 1 -0.3633 0.5418 0.8732 29 1 -0.3633 0.4854 -0.9058 30 1 1.1352 1.4120 -3.4723 31 1 0.4420 -2.0732 1.3347 32 1 1.8168 -2.5950 0.3318 33 1 1.9617 -2.5869 2.1058 34 1 1.9298 1.0870 2.3125 35 1 0.5722 -0.0345 2.5725 36 1 0.2681 0.7278 5.2190 37 1 1.6172 1.6913 5.8672 38 1 1.2706 1.7070 4.1214 39 1 2.2719 -0.4970 6.8784 40 1 3.0498 -1.6856 5.8059 41 1 5.2677 -1.2870 4.9108 42 1 7.4276 -0.1431 5.2063 43 1 5.5621 2.7070 7.7794 44 1 3.4016 1.5673 7.4721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268326998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:47 Heat of formation + Delta-G solvation = -55.918620 kcal Electronic energy + Delta-G solvation = -25479.547386 eV Core-core repulsion = 21732.231298 eV Total energy + Delta-G solvation = -3747.316087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.93041 -41.19483 -39.89183 -38.39047 -36.47746 -34.66706 -32.70794 -32.09819 -30.96491 -29.21574 -28.01665 -27.20826 -26.62351 -25.20113 -23.98525 -22.65416 -21.35978 -19.97096 -18.68275 -18.35645 -17.99794 -17.31106 -17.17823 -17.05054 -16.61885 -16.56704 -16.11055 -15.80723 -15.28368 -15.12876 -14.68752 -14.53091 -14.37228 -14.31982 -14.06010 -13.82953 -13.52406 -13.30680 -13.12264 -12.87594 -12.83091 -12.76752 -12.66898 -12.62755 -12.48857 -12.21386 -12.04023 -11.91415 -11.79116 -11.02182 -10.61714 -10.44948 -10.06749 -9.70558 -9.53460 -8.81919 -8.14282 -6.19068 0.06923 0.27722 1.41995 1.42737 1.52622 1.71227 2.03538 2.44159 2.70670 3.17091 3.27269 3.45253 3.67990 3.81097 3.83307 3.96634 4.21337 4.30781 4.33256 4.39750 4.46687 4.58285 4.62980 4.70083 4.70806 4.82550 4.85165 4.88968 4.97190 5.01536 5.03458 5.08952 5.15606 5.24117 5.27196 5.49028 5.53740 5.63963 5.69052 5.74083 5.91955 6.14103 6.37466 6.48101 6.74206 6.92454 7.32098 7.48069 8.95006 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.003140 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.724174 B = 8914.706863 C = 9607.376060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.216 3.784 3 H 0.015 0.985 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.538 5.538 13 C 0.043 3.957 14 C 0.040 3.960 15 C 0.516 3.484 16 O -0.555 6.555 17 N -0.612 5.612 18 C 0.069 3.931 19 C 0.157 3.843 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.170 4.170 23 C 0.079 3.921 24 F -0.150 7.150 25 C -0.155 4.155 26 C -0.068 4.068 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.159 0.841 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 2.249 23.685 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.109 3.891 3 H 0.033 0.967 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.262 5.262 13 C -0.106 4.106 14 C -0.091 4.091 15 C 0.304 3.696 16 O -0.432 6.432 17 N -0.346 5.346 18 C -0.073 4.073 19 C 0.035 3.965 20 C -0.121 4.121 21 C -0.101 4.101 22 C -0.189 4.189 23 C 0.059 3.941 24 F -0.129 7.129 25 C -0.174 4.174 26 C -0.086 4.086 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.177 0.823 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.983 1.889 23.448 23.544 hybrid contribution -0.081 -0.228 -1.391 1.412 sum 0.902 1.661 22.057 22.138 Atomic orbital electron populations 1.22160 0.99813 0.99313 0.99929 1.19110 0.90169 0.93256 0.86563 0.96725 1.21350 1.35135 1.08064 0.91262 0.93066 1.25594 0.95425 0.95553 1.01552 1.70053 1.46333 1.14956 1.24383 0.85672 0.78598 0.78759 0.79232 1.19823 1.20860 1.19966 1.61913 1.60382 1.02623 1.01268 1.22223 0.96396 0.90222 1.01716 1.21990 0.98511 0.99094 0.89495 1.20824 0.81420 0.82856 0.84517 1.90603 1.38292 1.29373 1.84977 1.47979 1.45932 1.34616 1.06070 1.22106 0.93517 0.87617 1.04048 1.20436 0.89420 0.97194 0.89421 1.20497 0.95684 0.97635 0.98260 1.21116 0.92004 0.99568 0.97436 1.21282 0.99963 0.96577 1.01033 1.18021 0.81780 0.93917 1.00351 1.91470 1.45378 1.81753 1.94317 1.21439 0.91440 1.02568 1.01908 1.21264 0.97958 0.93000 0.96362 0.94407 0.94095 0.93660 0.92893 0.96201 0.93052 0.91443 0.88508 0.91090 0.90607 0.88196 0.91326 0.85481 0.90649 0.86282 0.84889 0.82345 0.81169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.97 8.36 71.98 0.60 -6.37 16 2 C 0.22 10.90 2.21 44.17 0.10 11.00 16 3 H 0.01 0.83 7.98 -2.39 -0.02 0.81 16 4 C -0.52 -29.26 7.93 25.60 0.20 -29.06 16 5 H 0.05 2.96 6.57 -2.91 -0.02 2.94 16 6 C 0.02 1.00 5.18 84.66 0.44 1.44 16 7 N -0.92 -52.89 12.17 21.45 0.26 -52.63 16 8 Si 0.95 44.49 29.55 68.60 2.03 46.52 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 12 N -0.54 -23.91 4.48 -906.05 -4.06 -27.97 16 13 C 0.04 1.78 8.45 127.69 1.08 2.86 16 14 C 0.04 1.37 3.44 85.56 0.29 1.67 16 15 C 0.52 16.22 7.40 87.66 0.65 16.86 16 16 O -0.55 -21.53 13.44 -3.03 -0.04 -21.57 16 17 N -0.61 -12.88 2.86 -851.14 -2.43 -15.31 16 18 C 0.07 0.89 10.24 127.77 1.31 2.20 16 19 C 0.16 2.72 5.53 85.64 0.47 3.19 16 20 C -0.12 -2.29 5.46 -19.86 -0.11 -2.39 16 21 C -0.08 -2.04 9.70 22.26 0.22 -1.82 16 22 C -0.17 -4.09 10.03 22.31 0.22 -3.86 16 23 C 0.08 1.75 7.30 22.37 0.16 1.91 16 24 F -0.15 -3.60 17.27 44.97 0.78 -2.82 16 25 C -0.16 -2.54 10.03 22.31 0.22 -2.32 16 26 C -0.07 -0.94 9.70 22.26 0.22 -0.72 16 27 H 0.04 1.66 6.38 -2.38 -0.02 1.65 16 28 H 0.04 1.57 6.84 -2.39 -0.02 1.56 16 29 H 0.04 2.29 6.87 -2.39 -0.02 2.28 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.02 0.77 6.47 -2.39 -0.02 0.75 16 32 H 0.05 2.34 6.31 -2.39 -0.02 2.33 16 33 H 0.07 2.75 5.88 -2.39 -0.01 2.73 16 34 H 0.10 3.21 7.26 -2.39 -0.02 3.19 16 35 H 0.07 2.15 6.94 -2.38 -0.02 2.13 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 38 H 0.07 1.03 6.44 -2.39 -0.02 1.01 16 39 H 0.13 1.13 8.02 -2.39 -0.02 1.11 16 40 H 0.08 1.62 7.36 -2.39 -0.02 1.60 16 41 H 0.12 3.40 7.60 -2.91 -0.02 3.38 16 42 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -70.53 357.67 3.62 -66.91 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.00 Total: 12.28 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.08 Total: -5.41 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -6.23 Total: -95.90 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.53 3.62 -66.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268326998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.993 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds