Wall clock time and date at job start Tue Mar 31 2020 09:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46711 * 2 1 4 4 C 1.50699 * 109.47096 * 120.00542 * 2 1 3 5 5 H 1.07998 * 119.99844 * 120.00251 * 4 2 1 6 6 C 1.37874 * 119.99975 * 299.99668 * 4 2 1 7 7 N 1.31514 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99834 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47565 * 60.00359 * 8 6 4 10 10 H 1.48508 * 109.47104 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47045 * 299.99753 * 8 6 4 12 12 N 1.46899 * 109.46716 * 240.00724 * 2 1 3 13 13 C 1.46904 * 111.00098 * 306.04085 * 12 2 1 14 14 C 1.46898 * 111.00329 * 69.99747 * 12 2 1 15 15 C 1.50696 * 109.47038 * 169.99555 * 14 12 2 16 16 N 1.29032 * 124.91313 * 90.00589 * 15 14 12 17 17 C 1.31779 * 117.12411 * 179.97438 * 16 15 14 18 18 C 1.50706 * 122.75016 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46957 * 95.02440 * 18 17 16 20 20 C 1.53006 * 109.46626 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47127 * 299.99539 * 20 19 18 22 22 C 1.53002 * 109.46817 * 60.00361 * 21 20 19 23 23 C 1.52996 * 109.46972 * 299.99733 * 22 21 20 24 24 C 1.33645 * 114.50312 * 0.23010 * 17 16 15 25 25 S 1.70978 * 124.92123 * 270.00066 * 15 14 12 26 26 H 1.08997 * 109.46922 * 299.99732 * 1 2 3 27 27 H 1.09001 * 109.47053 * 59.99056 * 1 2 3 28 28 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00652 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46807 * 183.95448 * 13 12 2 31 31 H 1.09002 * 109.47170 * 303.96163 * 13 12 2 32 32 H 1.09001 * 109.46651 * 63.95516 * 13 12 2 33 33 H 1.09005 * 109.46784 * 49.99788 * 14 12 2 34 34 H 1.08996 * 109.47427 * 289.99883 * 14 12 2 35 35 H 1.08993 * 109.46700 * 335.01921 * 18 17 16 36 36 H 1.08993 * 109.47839 * 60.00178 * 19 18 17 37 37 H 1.09000 * 109.47160 * 299.99740 * 19 18 17 38 38 H 1.09001 * 109.46801 * 59.99811 * 20 19 18 39 39 H 1.09001 * 109.46998 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.47153 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.46952 * 300.00302 * 21 20 19 42 42 H 1.08996 * 109.47407 * 60.00219 * 22 21 20 43 43 H 1.09000 * 109.46986 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46993 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47380 * 299.99696 * 23 22 21 46 46 H 1.07998 * 126.03935 * 179.77575 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8271 -0.4203 5.2204 11 1 1.8281 -2.5201 4.0079 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7528 0.0974 -2.4091 15 6 2.4773 -0.5159 -3.5795 16 7 1.9876 -1.4190 -4.3602 17 6 2.7577 -1.8484 -5.3396 18 6 2.3144 -2.8996 -6.3243 19 6 1.7541 -2.2217 -7.5762 20 6 1.3035 -3.2890 -8.5757 21 6 2.4981 -4.1638 -8.9608 22 6 3.0584 -4.8417 -7.7088 23 6 3.5090 -3.7744 -6.7094 24 6 3.9660 -1.2791 -5.3848 25 16 4.0671 -0.1160 -4.0652 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7083 1.1606 3.4845 30 1 1.8664 -2.5518 -2.1651 31 1 1.6466 -2.5987 -0.3993 32 1 0.3555 -1.9519 -1.4400 33 1 2.1024 1.1191 -2.2603 34 1 0.6813 0.1055 -2.6087 35 1 1.5417 -3.5199 -5.8702 36 1 2.5268 -1.6014 -8.0303 37 1 0.9028 -1.5987 -7.3019 38 1 0.5306 -3.9089 -8.1213 39 1 0.9039 -2.8061 -9.4674 40 1 2.1772 -4.9239 -9.6731 41 1 3.2710 -3.5438 -9.4150 42 1 2.2856 -5.4617 -7.2545 43 1 3.9093 -5.4653 -7.9832 44 1 3.9086 -4.2574 -5.8177 45 1 4.2820 -3.1545 -7.1636 46 1 4.7427 -1.4932 -6.1040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277728251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:35 Heat of formation + Delta-G solvation = 26.313721 kcal Electronic energy + Delta-G solvation = -23346.290438 eV Core-core repulsion = 20168.753389 eV Total energy + Delta-G solvation = -3177.537050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18423 -38.19461 -37.00631 -33.11146 -32.09405 -30.96891 -29.71589 -28.26261 -27.31639 -25.22269 -24.94713 -23.50685 -22.73641 -21.49815 -20.12446 -19.28535 -18.98192 -17.49563 -16.17402 -15.86760 -15.42641 -14.95633 -14.58287 -14.43377 -14.26928 -14.15880 -13.80662 -13.69821 -13.09298 -12.73731 -12.58086 -12.43146 -12.36514 -12.21379 -11.64630 -11.55251 -11.32253 -11.10543 -11.04637 -11.03568 -10.77024 -10.67968 -10.62746 -10.52496 -10.37774 -10.31020 -10.05140 -9.91744 -9.32775 -9.13444 -8.94067 -8.47004 -8.38675 -7.23837 -6.01403 -4.05058 0.96295 1.65543 2.05842 2.99563 3.33415 3.37383 3.40776 4.11956 4.41923 4.53732 4.59149 4.65751 5.01049 5.06624 5.12803 5.19692 5.27631 5.29826 5.31095 5.31415 5.39262 5.47123 5.56610 5.65005 5.81728 5.82494 5.92268 5.93212 5.98728 6.03531 6.05699 6.16840 6.29649 6.30666 6.38714 6.47827 6.68764 6.83560 6.92198 7.08915 7.40108 7.69323 7.81588 8.01840 8.09068 8.34437 8.53702 9.00148 9.59753 11.05711 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.002927 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.583860 B = 9563.453852 C = 9695.312528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.213 3.787 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.038 3.962 14 C 0.122 3.878 15 C 0.086 3.914 16 N -0.476 5.476 17 C 0.078 3.922 18 C -0.010 4.010 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.279 4.279 25 S 0.130 5.870 26 H 0.089 0.911 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -5.924 -21.478 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.253 5.253 13 C -0.111 4.111 14 C -0.009 4.009 15 C -0.193 4.193 16 N -0.191 5.191 17 C -0.055 4.055 18 C -0.031 4.031 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.419 4.419 25 S 0.386 5.614 26 H 0.108 0.892 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.567 -5.306 -20.777 21.924 hybrid contribution -0.821 -0.957 0.251 1.285 sum 3.745 -6.262 -20.526 21.784 Atomic orbital electron populations 1.22420 1.00582 0.99658 1.00565 1.19348 0.89967 0.94468 0.85541 0.94195 1.21033 1.30660 1.12539 0.89470 0.91962 1.24910 0.95213 0.95136 0.98960 1.69867 1.36958 1.23047 1.23559 0.86568 0.79232 0.79610 0.82033 1.20217 1.21398 1.20369 1.62418 1.59081 1.02732 1.01021 1.22216 0.96511 0.91218 1.01140 1.20662 0.97099 0.96580 0.86587 1.27184 0.95398 0.96935 0.99771 1.66168 1.35931 1.12021 1.05004 1.20138 0.90097 0.99544 0.95731 1.19681 0.98010 0.93089 0.92366 1.21537 1.00852 0.97655 0.94425 1.21541 0.97858 0.97442 0.98790 1.21549 0.97931 0.98871 0.97385 1.21531 1.00723 0.97632 0.95749 1.21610 0.97096 0.97023 0.99169 1.26708 1.02918 1.06102 1.06135 1.84010 1.16647 1.38187 1.22581 0.89207 0.97408 0.94808 0.92916 0.93565 0.90980 0.96114 0.89391 0.92357 0.89600 0.91966 0.91676 0.91822 0.91991 0.92176 0.92067 0.91816 0.91925 0.91613 0.91771 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.22 37.16 0.31 -3.85 16 2 C 0.21 5.27 2.31 -68.86 -0.16 5.11 16 3 H 0.04 1.07 7.93 -51.93 -0.41 0.66 16 4 C -0.50 -13.54 7.91 -34.44 -0.27 -13.81 16 5 H 0.06 1.71 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -11.44 4.69 -237.73 -1.12 -12.55 16 13 C 0.04 0.79 8.48 60.07 0.51 1.29 16 14 C 0.12 2.28 5.11 -4.98 -0.03 2.25 16 15 C 0.09 1.45 6.04 -13.46 -0.08 1.37 16 16 N -0.48 -7.99 9.75 -8.05 -0.08 -8.06 16 17 C 0.08 1.09 5.73 -84.22 -0.48 0.61 16 18 C -0.01 -0.11 2.60 -91.77 -0.24 -0.35 16 19 C -0.11 -1.04 5.19 -26.73 -0.14 -1.18 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.11 -1.03 4.70 -26.73 -0.13 -1.15 16 24 C -0.28 -3.56 10.36 29.12 0.30 -3.26 16 25 S 0.13 1.86 23.18 -107.50 -2.49 -0.63 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 28 H 0.03 0.79 6.41 -51.93 -0.33 0.46 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 0.92 6.70 -51.93 -0.35 0.57 16 31 H 0.07 1.59 6.76 -51.93 -0.35 1.23 16 32 H 0.02 0.43 6.46 -51.93 -0.34 0.09 16 33 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 34 H 0.06 1.11 7.06 -51.93 -0.37 0.74 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.54 6.94 -51.93 -0.36 0.18 16 46 H 0.17 1.69 6.98 -52.49 -0.37 1.33 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -28.31 362.52 -11.29 -39.59 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.69 Total: -0.85 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.98 Total: -14.67 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.57 Total: -45.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.49 Total: -0.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.31 -11.29 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277728251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.906 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds