Wall clock time and date at job start Tue Mar 31 2020 09:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46711 * 2 1 4 4 C 1.50699 * 109.47096 * 120.00542 * 2 1 3 5 5 H 1.07998 * 119.99844 * 120.00251 * 4 2 1 6 6 C 1.37874 * 119.99975 * 299.99668 * 4 2 1 7 7 N 1.31514 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99834 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47565 * 60.00359 * 8 6 4 10 10 H 1.48508 * 109.47104 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47045 * 299.99753 * 8 6 4 12 12 N 1.46899 * 109.46716 * 240.00724 * 2 1 3 13 13 C 1.46904 * 111.00098 * 306.04085 * 12 2 1 14 14 C 1.46898 * 111.00329 * 69.99747 * 12 2 1 15 15 C 1.50696 * 109.47038 * 169.99555 * 14 12 2 16 16 N 1.29032 * 124.91313 * 90.00589 * 15 14 12 17 17 C 1.31779 * 117.12411 * 179.97438 * 16 15 14 18 18 C 1.50706 * 122.75016 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46957 * 95.02440 * 18 17 16 20 20 C 1.53006 * 109.46626 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47127 * 299.99539 * 20 19 18 22 22 C 1.53002 * 109.46817 * 60.00361 * 21 20 19 23 23 C 1.52996 * 109.46972 * 299.99733 * 22 21 20 24 24 C 1.33645 * 114.50312 * 0.23010 * 17 16 15 25 25 S 1.70978 * 124.92123 * 270.00066 * 15 14 12 26 26 H 1.08997 * 109.46922 * 299.99732 * 1 2 3 27 27 H 1.09001 * 109.47053 * 59.99056 * 1 2 3 28 28 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00652 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46807 * 183.95448 * 13 12 2 31 31 H 1.09002 * 109.47170 * 303.96163 * 13 12 2 32 32 H 1.09001 * 109.46651 * 63.95516 * 13 12 2 33 33 H 1.09005 * 109.46784 * 49.99788 * 14 12 2 34 34 H 1.08996 * 109.47427 * 289.99883 * 14 12 2 35 35 H 1.08993 * 109.46700 * 335.01921 * 18 17 16 36 36 H 1.08993 * 109.47839 * 60.00178 * 19 18 17 37 37 H 1.09000 * 109.47160 * 299.99740 * 19 18 17 38 38 H 1.09001 * 109.46801 * 59.99811 * 20 19 18 39 39 H 1.09001 * 109.46998 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.47153 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.46952 * 300.00302 * 21 20 19 42 42 H 1.08996 * 109.47407 * 60.00219 * 22 21 20 43 43 H 1.09000 * 109.46986 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46993 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47380 * 299.99696 * 23 22 21 46 46 H 1.07998 * 126.03935 * 179.77575 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8271 -0.4203 5.2204 11 1 1.8281 -2.5201 4.0079 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7528 0.0974 -2.4091 15 6 2.4773 -0.5159 -3.5795 16 7 1.9876 -1.4190 -4.3602 17 6 2.7577 -1.8484 -5.3396 18 6 2.3144 -2.8996 -6.3243 19 6 1.7541 -2.2217 -7.5762 20 6 1.3035 -3.2890 -8.5757 21 6 2.4981 -4.1638 -8.9608 22 6 3.0584 -4.8417 -7.7088 23 6 3.5090 -3.7744 -6.7094 24 6 3.9660 -1.2791 -5.3848 25 16 4.0671 -0.1160 -4.0652 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7083 1.1606 3.4845 30 1 1.8664 -2.5518 -2.1651 31 1 1.6466 -2.5987 -0.3993 32 1 0.3555 -1.9519 -1.4400 33 1 2.1024 1.1191 -2.2603 34 1 0.6813 0.1055 -2.6087 35 1 1.5417 -3.5199 -5.8702 36 1 2.5268 -1.6014 -8.0303 37 1 0.9028 -1.5987 -7.3019 38 1 0.5306 -3.9089 -8.1213 39 1 0.9039 -2.8061 -9.4674 40 1 2.1772 -4.9239 -9.6731 41 1 3.2710 -3.5438 -9.4150 42 1 2.2856 -5.4617 -7.2545 43 1 3.9093 -5.4653 -7.9832 44 1 3.9086 -4.2574 -5.8177 45 1 4.2820 -3.1545 -7.1636 46 1 4.7427 -1.4932 -6.1040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277728251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:34 Heat of formation + Delta-G solvation = 11.290367 kcal Electronic energy + Delta-G solvation = -23346.941900 eV Core-core repulsion = 20168.753389 eV Total energy + Delta-G solvation = -3178.188511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26181 -39.30617 -38.47702 -34.94059 -33.28296 -31.65189 -31.18082 -29.74767 -28.71609 -27.28835 -26.35495 -24.77302 -23.42483 -22.67327 -21.18933 -20.85725 -19.99652 -18.69529 -18.14500 -17.20688 -16.72083 -16.35188 -15.99905 -15.52667 -15.33960 -15.24586 -14.97895 -14.87748 -14.45978 -14.36488 -13.88377 -13.59159 -13.37192 -13.21008 -13.06025 -12.88458 -12.81589 -12.61553 -12.56108 -12.49351 -12.32163 -12.06116 -11.98585 -11.90845 -11.83057 -11.34108 -11.10898 -11.02402 -10.96869 -10.54853 -10.48262 -10.29310 -9.60828 -8.99074 -8.10392 -6.21028 -0.21089 0.50671 0.90937 1.44142 1.45163 1.52820 1.83679 2.43881 3.00918 3.18848 3.47263 3.78960 3.83153 3.90516 4.10347 4.28965 4.32593 4.38406 4.40305 4.50313 4.51978 4.56658 4.61103 4.63912 4.69818 4.72921 4.76053 4.80224 4.89197 4.97668 5.10659 5.12373 5.16214 5.25914 5.26624 5.27475 5.29128 5.43700 5.45960 5.47536 5.59284 5.68514 5.76001 6.14070 6.39790 6.61451 6.87675 6.90452 7.47593 8.95535 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.002927 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.583860 B = 9563.453852 C = 9695.312528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.218 3.782 3 H 0.016 0.984 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.534 5.534 13 C 0.052 3.948 14 C 0.128 3.872 15 C 0.051 3.949 16 N -0.494 5.494 17 C 0.059 3.941 18 C -0.008 4.008 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.107 4.107 24 C -0.259 4.259 25 S 0.153 5.847 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.017 0.983 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -6.935 -23.294 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.111 3.889 3 H 0.034 0.966 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.097 4.097 14 C -0.003 4.003 15 C -0.227 4.227 16 N -0.210 5.210 17 C -0.073 4.073 18 C -0.029 4.029 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.398 4.398 25 S 0.408 5.592 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.993 -6.323 -22.607 24.228 hybrid contribution -1.233 -0.633 0.714 1.559 sum 4.760 -6.956 -21.894 23.460 Atomic orbital electron populations 1.22224 1.00174 0.99277 1.00170 1.19107 0.90129 0.93189 0.86450 0.96588 1.21281 1.30779 1.12516 0.90775 0.92731 1.25637 0.95355 0.95789 1.01652 1.69985 1.37677 1.24071 1.24147 0.85616 0.78749 0.78611 0.78667 1.19783 1.20917 1.19900 1.62283 1.59116 1.03097 1.01381 1.22055 0.96251 0.90779 1.00607 1.20540 0.97147 0.96571 0.86054 1.26776 0.97106 0.98562 1.00215 1.66143 1.37223 1.11988 1.05611 1.20552 0.90461 1.00460 0.95818 1.19743 0.98497 0.92498 0.92156 1.21495 1.00303 0.97967 0.94233 1.21532 0.98257 0.97054 0.98569 1.21538 0.97575 0.99021 0.97256 1.21529 1.01106 0.97267 0.95568 1.21592 0.96391 0.97178 0.99302 1.27110 1.03005 1.04238 1.05451 1.83875 1.14367 1.38170 1.22758 0.91612 0.95648 0.95045 0.92879 0.92644 0.92517 0.96420 0.88986 0.93123 0.91407 0.91164 0.93519 0.92422 0.90954 0.91011 0.91257 0.92442 0.90570 0.92561 0.90395 0.78081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.79 8.22 71.98 0.59 -7.20 16 2 C 0.22 11.05 2.31 44.17 0.10 11.15 16 3 H 0.02 0.89 7.93 -2.39 -0.02 0.87 16 4 C -0.52 -28.40 7.91 25.60 0.20 -28.20 16 5 H 0.05 3.03 7.12 -2.91 -0.02 3.01 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.53 -23.49 4.69 -906.04 -4.25 -27.74 16 13 C 0.05 2.18 8.48 127.69 1.08 3.26 16 14 C 0.13 4.82 5.11 85.56 0.44 5.26 16 15 C 0.05 1.71 6.04 88.52 0.53 2.24 16 16 N -0.49 -16.39 9.75 -179.39 -1.75 -18.13 16 17 C 0.06 1.58 5.73 41.53 0.24 1.82 16 18 C -0.01 -0.16 2.60 -11.54 -0.03 -0.19 16 19 C -0.10 -1.85 5.19 30.60 0.16 -1.69 16 20 C -0.12 -1.65 5.92 30.60 0.18 -1.46 16 21 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 22 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 23 C -0.11 -1.72 4.70 30.59 0.14 -1.58 16 24 C -0.26 -5.96 10.36 66.78 0.69 -5.27 16 25 S 0.15 4.17 23.18 -56.49 -1.31 2.86 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 27 H 0.02 1.10 6.91 -2.39 -0.02 1.09 16 28 H 0.03 1.50 6.41 -2.39 -0.02 1.49 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.05 2.21 6.70 -2.39 -0.02 2.20 16 31 H 0.06 2.53 6.76 -2.39 -0.02 2.52 16 32 H 0.02 0.74 6.46 -2.39 -0.02 0.72 16 33 H 0.09 3.31 7.93 -2.38 -0.02 3.29 16 34 H 0.05 1.96 7.06 -2.39 -0.02 1.94 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.04 6.94 -2.39 -0.02 1.03 16 46 H 0.20 3.21 6.98 -2.91 -0.02 3.19 16 Total: -1.00 -60.76 362.52 1.06 -59.70 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.95 Total: 12.82 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 5.15 Total: -23.12 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.76 Total: -98.09 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.31 Total: 2.86 kcal Total: -60.76 1.06 -59.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277728251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.992 kcal (2) G-P(sol) polarization free energy of solvation -60.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds