Wall clock time and date at job start Tue Mar 31 2020 09:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46890 * 111.00136 * 2 1 4 4 C 1.39679 * 110.99682 * 123.95311 * 2 1 3 5 5 C 1.38932 * 120.07502 * 301.89597 * 4 2 1 6 6 C 1.38081 * 119.92504 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07302 * 0.03358 * 6 5 4 8 8 C 1.38256 * 120.15157 * 359.96899 * 7 6 5 9 9 C 1.38125 * 120.07545 * 359.74674 * 8 7 6 10 10 C 1.50707 * 120.04090 * 180.27577 * 9 8 7 11 11 N 1.46896 * 109.47020 * 104.92287 * 10 9 8 12 12 C 1.46901 * 111.00185 * 287.49843 * 11 10 9 13 13 C 1.46904 * 110.99840 * 163.55131 * 11 10 9 14 14 C 1.52991 * 109.47135 * 190.00191 * 13 11 10 15 15 C 1.53000 * 109.47298 * 179.97438 * 14 13 11 16 16 S 1.80997 * 109.47449 * 179.97438 * 15 14 13 17 17 C 1.76199 * 100.00236 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99897 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00285 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00071 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47405 * 89.99560 * 21 19 17 23 23 H 1.48500 * 109.47107 * 209.99884 * 21 19 17 24 24 H 1.48505 * 109.47004 * 329.99210 * 21 19 17 25 25 H 1.09001 * 109.47129 * 56.04916 * 1 2 3 26 26 H 1.09000 * 109.47567 * 296.05023 * 1 2 3 27 27 H 1.08997 * 109.47447 * 176.04658 * 1 2 3 28 28 H 1.08998 * 109.47866 * 55.12844 * 3 2 1 29 29 H 1.09000 * 109.47380 * 175.13704 * 3 2 1 30 30 H 1.09007 * 109.47058 * 295.12672 * 3 2 1 31 31 H 1.08003 * 120.03371 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.96022 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.92042 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.96476 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46668 * 224.92831 * 10 9 8 36 36 H 1.09002 * 109.46569 * 344.92163 * 10 9 8 37 37 H 1.09003 * 109.46889 * 62.84787 * 12 11 10 38 38 H 1.08990 * 109.47454 * 182.84483 * 12 11 10 39 39 H 1.09000 * 109.47031 * 302.85308 * 12 11 10 40 40 H 1.09000 * 109.46709 * 309.99942 * 13 11 10 41 41 H 1.09000 * 109.47283 * 69.99614 * 13 11 10 42 42 H 1.09000 * 109.47118 * 299.99500 * 14 13 11 43 43 H 1.09000 * 109.47506 * 59.99559 * 14 13 11 44 44 H 1.09000 * 109.46720 * 299.99857 * 15 14 13 45 45 H 1.09000 * 109.47110 * 59.99430 * 15 14 13 46 46 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6259 -0.3718 2.3798 6 6 2.1220 -1.0943 3.4468 7 6 2.9607 -2.1714 3.2244 8 6 3.3046 -2.5288 1.9340 9 6 2.8072 -1.8141 0.8618 10 6 3.1777 -2.2083 -0.5448 11 7 2.0385 -2.8838 -1.1802 12 6 1.8481 -4.2303 -0.6245 13 6 2.2037 -2.9350 -2.6390 14 6 0.9012 -3.4138 -3.2832 15 6 1.0730 -3.4665 -4.8026 16 16 -0.4676 -4.0336 -5.5648 17 6 0.0006 -3.9999 -7.2631 18 1 0.9965 -3.6892 -7.5426 19 6 -0.9101 -4.3737 -8.2416 20 7 -0.5606 -4.3480 -9.5103 21 14 -2.6324 -4.9117 -7.7581 22 1 -3.5297 -3.7290 -7.7256 23 1 -3.1415 -5.8923 -8.7503 24 1 -2.5950 -5.5418 -6.4138 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3634 0.4513 0.9232 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5772 1.9212 0.8431 29 1 3.0816 1.3436 0.0871 30 1 1.7182 1.8669 -0.9305 31 1 0.9708 0.4690 2.5540 32 1 1.8549 -0.8179 4.4561 33 1 3.3476 -2.7345 4.0609 34 1 3.9594 -3.3707 1.7638 35 1 3.4361 -1.3165 -1.1159 36 1 4.0328 -2.8838 -0.5195 37 1 1.6086 -4.1550 0.4362 38 1 1.0307 -4.7268 -1.1471 39 1 2.7639 -4.8079 -0.7500 40 1 2.4494 -1.9407 -3.0119 41 1 3.0085 -3.6261 -2.8896 42 1 0.6555 -4.4081 -2.9104 43 1 0.0964 -2.7227 -3.0327 44 1 1.3185 -2.4720 -5.1752 45 1 1.8779 -4.1573 -5.0535 46 1 -1.1971 -4.6089 -10.1941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288564441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:34 Heat of formation + Delta-G solvation = 32.007926 kcal Electronic energy + Delta-G solvation = -22944.929341 eV Core-core repulsion = 19767.639211 eV Total energy + Delta-G solvation = -3177.290130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28058 -37.60443 -36.60094 -33.36452 -32.39936 -31.23709 -30.08353 -27.69869 -27.23667 -26.44777 -25.57880 -24.65202 -23.02686 -21.62911 -20.72010 -20.40900 -17.43288 -17.11755 -16.10225 -15.84826 -15.67289 -15.20975 -15.01768 -14.89705 -14.59167 -14.37695 -14.03593 -13.81211 -13.63402 -12.94349 -12.80230 -12.74933 -12.44050 -12.32187 -12.23369 -11.97793 -11.85116 -11.74858 -11.62964 -11.40475 -11.28094 -11.15064 -11.01202 -10.92503 -10.26092 -10.07037 -9.72960 -9.05775 -8.96695 -8.80359 -8.53798 -8.50291 -8.18259 -6.88775 -6.24699 -3.96068 1.10865 1.14841 3.05531 3.33167 3.44909 3.48844 3.63847 3.74804 4.17934 4.35372 4.63762 4.67302 4.82029 4.86583 4.96630 5.07608 5.12671 5.14117 5.20864 5.22869 5.31063 5.35455 5.41561 5.48305 5.50597 5.55917 5.64661 5.67155 5.72199 5.76951 5.88092 5.89565 5.93855 5.99338 6.11897 6.17473 6.26721 6.32403 6.38616 6.59600 6.65366 6.74555 6.77493 7.16555 7.19141 7.31529 7.99238 8.48325 9.21523 10.84896 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002654 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.551282 B =10549.286631 C =10907.567254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.497 5.497 3 C 0.028 3.972 4 C 0.114 3.886 5 C -0.154 4.154 6 C -0.114 4.114 7 C -0.126 4.126 8 C -0.111 4.111 9 C -0.053 4.053 10 C 0.107 3.893 11 N -0.522 5.522 12 C 0.020 3.980 13 C 0.064 3.936 14 C -0.095 4.095 15 C -0.081 4.081 16 S -0.217 6.217 17 C -0.500 4.500 18 H 0.087 0.913 19 C 0.091 3.909 20 N -0.883 5.883 21 Si 0.862 3.138 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.238 1.238 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 7.726 26.641 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.217 5.217 3 C -0.119 4.119 4 C 0.019 3.981 5 C -0.174 4.174 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.130 4.130 9 C -0.055 4.055 10 C -0.021 4.021 11 N -0.246 5.246 12 C -0.128 4.128 13 C -0.065 4.065 14 C -0.133 4.133 15 C -0.230 4.230 16 S 0.011 5.989 17 C -0.648 4.648 18 H 0.105 0.895 19 C -0.117 4.117 20 N -0.520 5.520 21 Si 0.687 3.313 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.162 1.162 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.994 7.459 26.528 28.201 hybrid contribution 0.797 0.044 -0.059 0.800 sum 6.791 7.502 26.469 28.338 Atomic orbital electron populations 1.22386 0.85421 1.03288 1.00032 1.59502 1.08746 1.13017 1.40418 1.22445 1.00360 0.87974 1.01099 1.18618 0.96324 0.94716 0.88418 1.21645 1.01549 1.00806 0.93408 1.20972 0.97885 0.95938 0.98512 1.21092 0.98855 0.97647 0.96813 1.21042 1.00263 0.99473 0.92210 1.19736 0.96541 0.94065 0.95135 1.20837 0.90952 0.98748 0.91518 1.61859 1.40475 1.17941 1.04289 1.22475 1.00517 0.89402 1.00416 1.22132 0.97101 1.00996 0.86236 1.21317 0.97285 1.01855 0.92885 1.23012 1.00248 1.03085 0.96606 1.84142 1.19437 1.87807 1.07517 1.22139 1.03208 1.51783 0.87666 0.89470 1.24800 0.98806 0.94014 0.94106 1.69938 1.36026 1.46560 0.99525 0.86665 0.84252 0.79768 0.80627 1.19387 1.20202 1.16157 0.90978 0.95974 0.90435 0.95624 0.91592 0.90767 0.86574 0.86415 0.86222 0.86100 0.89481 0.94833 0.91929 0.90855 0.96061 0.90616 0.95259 0.91774 0.90725 0.91464 0.91746 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 9.32 60.06 0.56 0.92 16 2 N -0.50 -5.21 4.23 -186.86 -0.79 -6.00 16 3 C 0.03 0.24 9.33 60.06 0.56 0.80 16 4 C 0.11 1.20 4.67 -83.78 -0.39 0.81 16 5 C -0.15 -1.45 8.69 -39.38 -0.34 -1.79 16 6 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 7 C -0.13 -1.05 10.04 -39.55 -0.40 -1.44 16 8 C -0.11 -1.01 9.31 -39.62 -0.37 -1.38 16 9 C -0.05 -0.56 4.72 -104.42 -0.49 -1.05 16 10 C 0.11 1.16 4.69 -4.97 -0.02 1.14 16 11 N -0.52 -6.36 4.70 -244.37 -1.15 -7.51 16 12 C 0.02 0.23 9.24 60.07 0.55 0.79 16 13 C 0.06 0.86 4.95 -3.83 -0.02 0.84 16 14 C -0.09 -1.51 5.15 -26.74 -0.14 -1.64 16 15 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 16 S -0.22 -5.38 19.41 -107.50 -2.09 -7.46 16 17 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 18 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 19 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 20 N -0.88 -27.11 13.97 55.49 0.78 -26.33 16 21 Si 0.86 21.83 27.74 -169.99 -4.72 17.12 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.20 7.02 -51.93 -0.36 -0.17 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.20 7.75 -51.93 -0.40 -0.20 16 29 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.12 0.98 7.10 -52.48 -0.37 0.61 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.94 8.00 -52.49 -0.42 0.52 16 35 H 0.09 0.99 7.61 -51.93 -0.39 0.59 16 36 H 0.03 0.34 7.79 -51.93 -0.40 -0.06 16 37 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 38 H 0.07 0.89 6.19 -51.93 -0.32 0.57 16 39 H 0.02 0.23 8.05 -51.93 -0.42 -0.19 16 40 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 41 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 42 H 0.06 1.03 6.42 -51.93 -0.33 0.69 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 45 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 46 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -31.34 380.92 -10.71 -42.06 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.02 Total: -1.03 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.47 Total: -16.58 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -1.16 Total: -39.85 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.34 -10.71 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288564441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.066 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds