Wall clock time and date at job start Tue Mar 31 2020 09:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46890 * 111.00136 * 2 1 4 4 C 1.39679 * 110.99682 * 123.95311 * 2 1 3 5 5 C 1.38932 * 120.07502 * 301.89597 * 4 2 1 6 6 C 1.38081 * 119.92504 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07302 * 0.03358 * 6 5 4 8 8 C 1.38256 * 120.15157 * 359.96899 * 7 6 5 9 9 C 1.38125 * 120.07545 * 359.74674 * 8 7 6 10 10 C 1.50707 * 120.04090 * 180.27577 * 9 8 7 11 11 N 1.46896 * 109.47020 * 104.92287 * 10 9 8 12 12 C 1.46901 * 111.00185 * 287.49843 * 11 10 9 13 13 C 1.46904 * 110.99840 * 163.55131 * 11 10 9 14 14 C 1.52991 * 109.47135 * 190.00191 * 13 11 10 15 15 C 1.53000 * 109.47298 * 179.97438 * 14 13 11 16 16 S 1.80997 * 109.47449 * 179.97438 * 15 14 13 17 17 C 1.76199 * 100.00236 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99897 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00285 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00071 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47405 * 89.99560 * 21 19 17 23 23 H 1.48500 * 109.47107 * 209.99884 * 21 19 17 24 24 H 1.48505 * 109.47004 * 329.99210 * 21 19 17 25 25 H 1.09001 * 109.47129 * 56.04916 * 1 2 3 26 26 H 1.09000 * 109.47567 * 296.05023 * 1 2 3 27 27 H 1.08997 * 109.47447 * 176.04658 * 1 2 3 28 28 H 1.08998 * 109.47866 * 55.12844 * 3 2 1 29 29 H 1.09000 * 109.47380 * 175.13704 * 3 2 1 30 30 H 1.09007 * 109.47058 * 295.12672 * 3 2 1 31 31 H 1.08003 * 120.03371 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.96022 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.92042 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.96476 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46668 * 224.92831 * 10 9 8 36 36 H 1.09002 * 109.46569 * 344.92163 * 10 9 8 37 37 H 1.09003 * 109.46889 * 62.84787 * 12 11 10 38 38 H 1.08990 * 109.47454 * 182.84483 * 12 11 10 39 39 H 1.09000 * 109.47031 * 302.85308 * 12 11 10 40 40 H 1.09000 * 109.46709 * 309.99942 * 13 11 10 41 41 H 1.09000 * 109.47283 * 69.99614 * 13 11 10 42 42 H 1.09000 * 109.47118 * 299.99500 * 14 13 11 43 43 H 1.09000 * 109.47506 * 59.99559 * 14 13 11 44 44 H 1.09000 * 109.46720 * 299.99857 * 15 14 13 45 45 H 1.09000 * 109.47110 * 59.99430 * 15 14 13 46 46 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6259 -0.3718 2.3798 6 6 2.1220 -1.0943 3.4468 7 6 2.9607 -2.1714 3.2244 8 6 3.3046 -2.5288 1.9340 9 6 2.8072 -1.8141 0.8618 10 6 3.1777 -2.2083 -0.5448 11 7 2.0385 -2.8838 -1.1802 12 6 1.8481 -4.2303 -0.6245 13 6 2.2037 -2.9350 -2.6390 14 6 0.9012 -3.4138 -3.2832 15 6 1.0730 -3.4665 -4.8026 16 16 -0.4676 -4.0336 -5.5648 17 6 0.0006 -3.9999 -7.2631 18 1 0.9965 -3.6892 -7.5426 19 6 -0.9101 -4.3737 -8.2416 20 7 -0.5606 -4.3480 -9.5103 21 14 -2.6324 -4.9117 -7.7581 22 1 -3.5297 -3.7290 -7.7256 23 1 -3.1415 -5.8923 -8.7503 24 1 -2.5950 -5.5418 -6.4138 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3634 0.4513 0.9232 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5772 1.9212 0.8431 29 1 3.0816 1.3436 0.0871 30 1 1.7182 1.8669 -0.9305 31 1 0.9708 0.4690 2.5540 32 1 1.8549 -0.8179 4.4561 33 1 3.3476 -2.7345 4.0609 34 1 3.9594 -3.3707 1.7638 35 1 3.4361 -1.3165 -1.1159 36 1 4.0328 -2.8838 -0.5195 37 1 1.6086 -4.1550 0.4362 38 1 1.0307 -4.7268 -1.1471 39 1 2.7639 -4.8079 -0.7500 40 1 2.4494 -1.9407 -3.0119 41 1 3.0085 -3.6261 -2.8896 42 1 0.6555 -4.4081 -2.9104 43 1 0.0964 -2.7227 -3.0327 44 1 1.3185 -2.4720 -5.1752 45 1 1.8779 -4.1573 -5.0535 46 1 -1.1971 -4.6089 -10.1941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288564441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:33 Heat of formation + Delta-G solvation = 13.912933 kcal Electronic energy + Delta-G solvation = -22945.713999 eV Core-core repulsion = 19767.639211 eV Total energy + Delta-G solvation = -3178.074788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99409 -38.58550 -37.31141 -34.68652 -34.53398 -32.14055 -30.76611 -28.43177 -28.18290 -28.00890 -27.36561 -25.39575 -24.09447 -22.39352 -21.81768 -21.25133 -19.60053 -17.81653 -17.11643 -16.92866 -16.84376 -16.48109 -16.32948 -15.95090 -15.64927 -15.25131 -15.20644 -14.92384 -14.83581 -14.48410 -13.78752 -13.67018 -13.50106 -13.40336 -13.28670 -13.11406 -12.99945 -12.96957 -12.73125 -12.55488 -12.54206 -12.37664 -12.23167 -11.94648 -11.86130 -11.60824 -11.45988 -11.15025 -10.54029 -9.74277 -9.50674 -9.27362 -9.11504 -8.97084 -8.51008 -6.21758 0.43041 0.46123 1.13766 1.32819 1.48767 1.76665 2.25865 2.69902 2.75468 2.86993 3.03483 3.24183 3.90393 3.99049 4.01944 4.20225 4.23676 4.25757 4.30183 4.41508 4.44160 4.47096 4.51280 4.56756 4.64051 4.67275 4.71281 4.77060 4.78041 4.82307 4.88752 4.94243 4.99943 5.08810 5.10484 5.19390 5.24199 5.35184 5.51592 5.61514 5.67018 5.70844 5.98855 6.04855 6.11058 6.19184 6.26074 6.58428 6.93217 8.62210 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002654 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.551282 B =10549.286631 C =10907.567254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.510 5.510 3 C 0.031 3.969 4 C 0.100 3.900 5 C -0.163 4.163 6 C -0.116 4.116 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.070 4.070 10 C 0.113 3.887 11 N -0.528 5.528 12 C 0.024 3.976 13 C 0.075 3.925 14 C -0.080 4.080 15 C -0.067 4.067 16 S -0.220 6.220 17 C -0.521 4.521 18 H 0.050 0.950 19 C 0.037 3.963 20 N -0.923 5.923 21 Si 0.926 3.074 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.229 1.229 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 7.514 29.226 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.231 5.231 3 C -0.116 4.116 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.134 4.134 7 C -0.146 4.146 8 C -0.133 4.133 9 C -0.072 4.072 10 C -0.015 4.015 11 N -0.252 5.252 12 C -0.124 4.124 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.216 4.216 16 S 0.008 5.992 17 C -0.669 4.669 18 H 0.068 0.932 19 C -0.168 4.168 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.186 1.186 23 H -0.187 1.187 24 H -0.152 1.152 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.645 7.253 29.122 30.537 hybrid contribution 1.037 0.164 -0.796 1.318 sum 6.682 7.417 28.325 30.033 Atomic orbital electron populations 1.22298 0.85571 1.02199 1.00561 1.59484 1.08760 1.13900 1.40938 1.22431 1.00291 0.87341 1.01525 1.18760 0.96804 0.95042 0.88865 1.21775 1.01895 1.01298 0.93324 1.21281 0.97304 0.95587 0.99277 1.21395 0.98368 0.97591 0.97198 1.21237 1.00206 0.99620 0.92282 1.19784 0.97527 0.94741 0.95119 1.20775 0.90599 0.98341 0.91754 1.61810 1.41480 1.18550 1.03348 1.22438 1.00537 0.88950 1.00489 1.21927 0.95435 1.00871 0.87193 1.21175 0.98648 1.02064 0.89966 1.23064 0.97326 1.02492 0.98734 1.83843 1.22785 1.88322 1.04296 1.22351 1.01932 1.51715 0.90878 0.93210 1.25788 1.03130 0.93867 0.93984 1.70037 1.37850 1.47482 1.00790 0.85704 0.78813 0.79849 0.80916 1.18601 1.18746 1.15236 0.90943 0.94986 0.92181 0.94817 0.91645 0.90593 0.85990 0.84341 0.83948 0.84866 0.90309 0.94016 0.91431 0.91708 0.95276 0.90688 0.94865 0.91469 0.91243 0.91744 0.91852 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 127.69 1.19 1.98 16 2 N -0.51 -10.33 4.23 -745.11 -3.15 -13.47 16 3 C 0.03 0.51 9.33 127.69 1.19 1.70 16 4 C 0.10 1.98 4.67 38.21 0.18 2.16 16 5 C -0.16 -2.81 8.69 22.40 0.19 -2.61 16 6 C -0.12 -1.68 10.04 22.25 0.22 -1.45 16 7 C -0.13 -1.78 10.04 22.29 0.22 -1.56 16 8 C -0.11 -1.85 9.31 22.25 0.21 -1.64 16 9 C -0.07 -1.37 4.72 -19.73 -0.09 -1.47 16 10 C 0.11 2.31 4.69 85.56 0.40 2.71 16 11 N -0.53 -12.18 4.70 -927.06 -4.36 -16.55 16 12 C 0.02 0.51 9.24 127.69 1.18 1.69 16 13 C 0.08 1.92 4.95 86.30 0.43 2.35 16 14 C -0.08 -2.45 5.15 30.59 0.16 -2.29 16 15 C -0.07 -2.63 5.67 71.98 0.41 -2.22 16 16 S -0.22 -10.84 19.41 -56.49 -1.10 -11.94 16 17 C -0.52 -31.29 10.04 67.95 0.68 -30.61 16 18 H 0.05 3.25 8.03 -2.91 -0.02 3.22 16 19 C 0.04 2.20 5.50 84.86 0.47 2.66 16 20 N -0.92 -57.61 13.97 21.65 0.30 -57.30 16 21 Si 0.93 44.79 27.74 68.60 1.90 46.69 16 22 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.23 -10.68 6.74 99.48 0.67 -10.01 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 0.54 7.02 -2.39 -0.02 0.53 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.03 0.49 7.75 -2.39 -0.02 0.47 16 29 H 0.06 1.07 8.07 -2.39 -0.02 1.05 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.12 1.87 7.10 -2.91 -0.02 1.85 16 32 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.13 1.74 8.00 -2.91 -0.02 1.72 16 35 H 0.08 1.73 7.61 -2.39 -0.02 1.71 16 36 H 0.04 0.78 7.79 -2.39 -0.02 0.76 16 37 H 0.07 1.37 7.29 -2.39 -0.02 1.35 16 38 H 0.06 1.48 6.19 -2.39 -0.01 1.46 16 39 H 0.03 0.57 8.05 -2.39 -0.02 0.55 16 40 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 41 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 42 H 0.07 2.05 6.42 -2.39 -0.02 2.03 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 46 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -67.31 380.92 1.52 -65.79 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.89 Total: 15.38 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 7.04 Total: -28.61 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -7.21 Total: -87.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.10 Total: -11.94 kcal Total: -67.31 1.52 -65.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288564441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.703 kcal (2) G-P(sol) polarization free energy of solvation -67.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds