Wall clock time and date at job start Tue Mar 31 2020 09:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46880 * 2 1 4 4 C 1.36936 * 119.99349 * 273.31192 * 3 2 1 5 5 H 1.08002 * 120.00325 * 322.14320 * 4 3 2 6 6 C 1.38823 * 119.99865 * 142.14755 * 4 3 2 7 7 N 1.31622 * 119.99823 * 350.24479 * 6 4 3 8 8 Si 1.86802 * 119.99902 * 170.24966 * 6 4 3 9 9 H 1.48491 * 109.47126 * 59.99786 * 8 6 4 10 10 H 1.48500 * 109.46744 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46854 * 299.99762 * 8 6 4 12 12 C 1.46497 * 120.00213 * 93.30823 * 3 2 1 13 13 H 1.08998 * 109.46805 * 186.00986 * 12 3 2 14 14 C 1.52996 * 109.47142 * 306.00983 * 12 3 2 15 15 C 1.50698 * 109.46856 * 66.01290 * 12 3 2 16 16 O 1.21282 * 120.00023 * 353.88393 * 15 12 3 17 17 N 1.34774 * 120.00128 * 173.89181 * 15 12 3 18 18 C 1.46502 * 119.99766 * 354.73343 * 17 15 12 19 19 C 1.46498 * 120.00201 * 174.73840 * 17 15 12 20 20 C 1.50705 * 109.47006 * 89.99758 * 19 17 15 21 21 C 1.38266 * 119.98732 * 269.72113 * 20 19 17 22 22 C 1.38217 * 120.05329 * 180.27859 * 21 20 19 23 23 C 1.38223 * 120.02547 * 0.02562 * 22 21 20 24 24 C 1.38441 * 119.97375 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.02964 * 180.02562 * 24 23 22 26 26 C 1.38177 * 119.98467 * 90.00226 * 20 19 17 27 27 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47481 * 299.99978 * 1 2 3 29 29 H 1.08996 * 109.47527 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47025 * 239.99811 * 2 1 3 31 31 H 1.08998 * 109.46923 * 119.99427 * 2 1 3 32 32 H 0.96996 * 119.99842 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47459 * 51.49363 * 14 12 3 34 34 H 1.09007 * 109.46890 * 171.49205 * 14 12 3 35 35 H 1.09004 * 109.47334 * 291.48910 * 14 12 3 36 36 H 1.08993 * 109.47358 * 271.28112 * 18 17 15 37 37 H 1.09002 * 109.47142 * 31.28425 * 18 17 15 38 38 H 1.09003 * 109.47184 * 151.27985 * 18 17 15 39 39 H 1.08995 * 109.47486 * 329.99476 * 19 17 15 40 40 H 1.08998 * 109.46959 * 209.99581 * 19 17 15 41 41 H 1.08001 * 119.96927 * 0.26310 * 21 20 19 42 42 H 1.07998 * 119.98972 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.01504 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.01830 * 359.69701 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1819 2.0495 -1.1840 5 1 2.5534 1.5262 -2.0527 6 6 1.8702 3.3997 -1.2677 7 7 1.2410 3.9927 -0.2753 8 14 2.3438 4.3750 -2.7890 9 1 1.6885 3.7808 -3.9817 10 1 1.9009 5.7836 -2.6315 11 1 3.8180 4.3355 -2.9630 12 6 2.3315 2.0475 1.2666 13 1 2.5750 3.0928 1.0767 14 6 1.1205 1.9671 2.1982 15 6 3.5097 1.3669 1.9142 16 8 3.9661 0.3531 1.4295 17 7 4.0562 1.8845 3.0322 18 6 3.5809 3.1688 3.5528 19 6 5.1254 1.1631 3.7267 20 6 6.4611 1.5937 3.1772 21 6 7.0202 0.9158 2.1096 22 6 8.2477 1.3060 1.6083 23 6 8.9181 2.3742 2.1741 24 6 8.3592 3.0536 3.2430 25 9 9.0132 4.0982 3.7966 26 6 7.1291 2.6621 3.7442 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.0229 4.9360 -0.3340 33 1 0.7837 0.9328 2.2679 34 1 1.3999 2.3259 3.1889 35 1 0.3152 2.5855 1.8016 36 1 4.1486 3.9789 3.0953 37 1 2.5234 3.2876 3.3168 38 1 3.7169 3.1953 4.6340 39 1 4.9986 0.0912 3.5750 40 1 5.0819 1.3868 4.7925 41 1 6.4974 0.0807 1.6674 42 1 8.6837 0.7755 0.7747 43 1 9.8774 2.6786 1.7825 44 1 6.6920 3.1917 4.5778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299373164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:12 Heat of formation + Delta-G solvation = -23.012152 kcal Electronic energy + Delta-G solvation = -26516.285033 eV Core-core repulsion = 22770.395877 eV Total energy + Delta-G solvation = -3745.889156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.86807 -39.74466 -38.58868 -35.93427 -34.93657 -32.15024 -31.80536 -30.55532 -30.16617 -28.35854 -27.01478 -25.72491 -24.11030 -22.71346 -22.60608 -21.53788 -20.43183 -18.57765 -17.31418 -16.87889 -16.45508 -16.09745 -15.81815 -15.66731 -15.42069 -14.81865 -14.48401 -14.06827 -13.90419 -13.59957 -13.36731 -13.12932 -12.88797 -12.69424 -12.38677 -12.31977 -12.08467 -11.79407 -11.62578 -11.50985 -11.30716 -11.13661 -11.04557 -11.00631 -10.83006 -10.60989 -10.32785 -10.14188 -9.76350 -9.56334 -9.09425 -8.75434 -8.56500 -8.51242 -8.18583 -6.54482 -5.86310 -3.39273 1.17943 1.25349 3.33481 3.40374 3.41743 3.44135 3.53723 3.88109 4.25378 4.46394 4.72290 4.78683 5.03335 5.22137 5.31721 5.35348 5.40597 5.43063 5.50184 5.68670 5.75712 5.88904 5.93506 6.04662 6.11685 6.13785 6.25405 6.28889 6.40424 6.44771 6.54841 6.61145 6.65508 6.66457 6.82671 6.94259 6.97215 7.10269 7.25872 7.32891 7.44501 7.79405 7.97403 8.51151 8.96740 9.22492 9.78468 10.37060 11.20181 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004752 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.544282 B = 5890.990966 C = 6660.989181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 N -0.561 5.561 4 C -0.249 4.249 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.900 5.900 8 Si 0.902 3.098 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.171 3.829 13 H 0.125 0.875 14 C -0.150 4.150 15 C 0.493 3.507 16 O -0.539 6.539 17 N -0.623 5.623 18 C 0.069 3.931 19 C 0.153 3.847 20 C -0.071 4.071 21 C -0.100 4.100 22 C -0.094 4.094 23 C -0.156 4.156 24 C 0.088 3.912 25 F -0.145 7.145 26 C -0.143 4.143 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.256 0.744 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -2.578 10.447 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 N -0.280 5.280 4 C -0.379 4.379 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.544 5.544 8 Si 0.732 3.268 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.210 1.210 12 C 0.060 3.940 13 H 0.142 0.858 14 C -0.209 4.209 15 C 0.282 3.718 16 O -0.414 6.414 17 N -0.359 5.359 18 C -0.074 4.074 19 C 0.030 3.970 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.175 4.175 24 C 0.069 3.931 25 F -0.124 7.124 26 C -0.162 4.162 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.332 -2.928 10.165 13.466 hybrid contribution 0.502 1.034 -0.677 1.334 sum 8.834 -1.894 9.488 13.101 Atomic orbital electron populations 1.22455 0.99924 0.98331 1.02037 1.20753 0.91123 0.86808 0.98843 1.43440 1.72970 1.10238 1.01308 1.19104 1.36932 0.92608 0.89263 0.92127 1.25252 0.97529 0.98566 0.97518 1.69841 1.41662 1.10981 1.31889 0.86374 0.78435 0.78970 0.83027 1.20696 1.21516 1.20968 1.20344 0.88367 0.99403 0.85920 0.85774 1.22325 1.00161 1.01056 0.97313 1.23482 0.85514 0.84767 0.78064 1.90514 1.63562 1.25798 1.61574 1.48305 1.36742 1.22675 1.28212 1.22078 1.02144 0.84947 0.98267 1.20286 0.83154 0.98209 0.95383 1.20238 0.96289 0.94718 0.95989 1.21360 0.94775 1.00487 0.95265 1.21046 0.94954 0.96002 0.99222 1.21115 1.01622 0.97843 0.96951 1.17654 0.92467 0.87469 0.95517 1.91475 1.80759 1.55445 1.84685 1.20984 0.94170 0.98803 1.02260 0.95275 0.93188 0.92882 0.94424 0.93946 0.93418 0.93908 0.93781 0.90234 0.93263 0.88756 0.92147 0.89247 0.90285 0.84464 0.85135 0.85147 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.94 37.16 0.37 -3.04 16 2 C 0.15 3.38 5.05 -4.04 -0.02 3.36 16 3 N -0.56 -13.90 2.11 -166.98 -0.35 -14.25 16 4 C -0.25 -6.75 9.53 -15.06 -0.14 -6.89 16 5 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 6 C 0.01 0.27 5.04 -17.43 -0.09 0.19 16 7 N -0.90 -23.95 10.86 55.49 0.60 -23.34 16 8 Si 0.90 21.34 29.57 -169.99 -5.03 16.31 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.17 3.82 1.38 -69.09 -0.10 3.72 16 13 H 0.13 3.09 5.48 -51.93 -0.28 2.80 16 14 C -0.15 -2.92 7.81 37.16 0.29 -2.63 16 15 C 0.49 10.15 6.80 -10.99 -0.07 10.08 16 16 O -0.54 -12.30 13.65 5.56 0.08 -12.22 16 17 N -0.62 -10.18 2.86 -182.96 -0.52 -10.70 16 18 C 0.07 0.95 9.84 59.85 0.59 1.54 16 19 C 0.15 2.10 5.54 -5.19 -0.03 2.08 16 20 C -0.07 -1.00 5.46 -104.63 -0.57 -1.57 16 21 C -0.10 -1.49 9.56 -39.58 -0.38 -1.86 16 22 C -0.09 -1.23 10.04 -39.59 -0.40 -1.63 16 23 C -0.16 -1.99 10.03 -39.51 -0.40 -2.38 16 24 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 25 F -0.14 -1.99 17.27 2.25 0.04 -1.95 16 26 C -0.14 -1.88 9.68 -39.51 -0.38 -2.27 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.00 5.76 -51.93 -0.30 0.71 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 0.94 6.57 -51.93 -0.34 0.59 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.04 0.82 5.78 -51.93 -0.30 0.52 16 34 H 0.04 0.72 5.32 -51.93 -0.28 0.44 16 35 H 0.08 1.72 7.83 -51.93 -0.41 1.31 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.38 4.15 -51.93 -0.22 1.17 16 38 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 39 H 0.09 1.29 7.44 -51.93 -0.39 0.91 16 40 H 0.08 0.84 7.83 -51.93 -0.41 0.43 16 41 H 0.14 2.20 7.39 -52.49 -0.39 1.81 16 42 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -29.56 354.89 -7.67 -37.23 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.22 Total: 4.00 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.62 Total: -0.42 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.27 Total: -48.30 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.56 -7.67 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299373164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.217 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds