Wall clock time and date at job start Tue Mar 31 2020 09:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46880 * 2 1 4 4 C 1.36936 * 119.99349 * 273.31192 * 3 2 1 5 5 H 1.08002 * 120.00325 * 322.14320 * 4 3 2 6 6 C 1.38823 * 119.99865 * 142.14755 * 4 3 2 7 7 N 1.31622 * 119.99823 * 350.24479 * 6 4 3 8 8 Si 1.86802 * 119.99902 * 170.24966 * 6 4 3 9 9 H 1.48491 * 109.47126 * 59.99786 * 8 6 4 10 10 H 1.48500 * 109.46744 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46854 * 299.99762 * 8 6 4 12 12 C 1.46497 * 120.00213 * 93.30823 * 3 2 1 13 13 H 1.08998 * 109.46805 * 186.00986 * 12 3 2 14 14 C 1.52996 * 109.47142 * 306.00983 * 12 3 2 15 15 C 1.50698 * 109.46856 * 66.01290 * 12 3 2 16 16 O 1.21282 * 120.00023 * 353.88393 * 15 12 3 17 17 N 1.34774 * 120.00128 * 173.89181 * 15 12 3 18 18 C 1.46502 * 119.99766 * 354.73343 * 17 15 12 19 19 C 1.46498 * 120.00201 * 174.73840 * 17 15 12 20 20 C 1.50705 * 109.47006 * 89.99758 * 19 17 15 21 21 C 1.38266 * 119.98732 * 269.72113 * 20 19 17 22 22 C 1.38217 * 120.05329 * 180.27859 * 21 20 19 23 23 C 1.38223 * 120.02547 * 0.02562 * 22 21 20 24 24 C 1.38441 * 119.97375 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.02964 * 180.02562 * 24 23 22 26 26 C 1.38177 * 119.98467 * 90.00226 * 20 19 17 27 27 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47481 * 299.99978 * 1 2 3 29 29 H 1.08996 * 109.47527 * 60.00135 * 1 2 3 30 30 H 1.08998 * 109.47025 * 239.99811 * 2 1 3 31 31 H 1.08998 * 109.46923 * 119.99427 * 2 1 3 32 32 H 0.96996 * 119.99842 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47459 * 51.49363 * 14 12 3 34 34 H 1.09007 * 109.46890 * 171.49205 * 14 12 3 35 35 H 1.09004 * 109.47334 * 291.48910 * 14 12 3 36 36 H 1.08993 * 109.47358 * 271.28112 * 18 17 15 37 37 H 1.09002 * 109.47142 * 31.28425 * 18 17 15 38 38 H 1.09003 * 109.47184 * 151.27985 * 18 17 15 39 39 H 1.08995 * 109.47486 * 329.99476 * 19 17 15 40 40 H 1.08998 * 109.46959 * 209.99581 * 19 17 15 41 41 H 1.08001 * 119.96927 * 0.26310 * 21 20 19 42 42 H 1.07998 * 119.98972 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.01504 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.01830 * 359.69701 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1819 2.0495 -1.1840 5 1 2.5534 1.5262 -2.0527 6 6 1.8702 3.3997 -1.2677 7 7 1.2410 3.9927 -0.2753 8 14 2.3438 4.3750 -2.7890 9 1 1.6885 3.7808 -3.9817 10 1 1.9009 5.7836 -2.6315 11 1 3.8180 4.3355 -2.9630 12 6 2.3315 2.0475 1.2666 13 1 2.5750 3.0928 1.0767 14 6 1.1205 1.9671 2.1982 15 6 3.5097 1.3669 1.9142 16 8 3.9661 0.3531 1.4295 17 7 4.0562 1.8845 3.0322 18 6 3.5809 3.1688 3.5528 19 6 5.1254 1.1631 3.7267 20 6 6.4611 1.5937 3.1772 21 6 7.0202 0.9158 2.1096 22 6 8.2477 1.3060 1.6083 23 6 8.9181 2.3742 2.1741 24 6 8.3592 3.0536 3.2430 25 9 9.0132 4.0982 3.7966 26 6 7.1291 2.6621 3.7442 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.0229 4.9360 -0.3340 33 1 0.7837 0.9328 2.2679 34 1 1.3999 2.3259 3.1889 35 1 0.3152 2.5855 1.8016 36 1 4.1486 3.9789 3.0953 37 1 2.5234 3.2876 3.3168 38 1 3.7169 3.1953 4.6340 39 1 4.9986 0.0912 3.5750 40 1 5.0819 1.3868 4.7925 41 1 6.4974 0.0807 1.6674 42 1 8.6837 0.7755 0.7747 43 1 9.8774 2.6786 1.7825 44 1 6.6920 3.1917 4.5778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299373164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:11 Heat of formation + Delta-G solvation = -37.878377 kcal Electronic energy + Delta-G solvation = -26516.929681 eV Core-core repulsion = 22770.395877 eV Total energy + Delta-G solvation = -3746.533804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91479 -41.12188 -39.82638 -37.62900 -36.40529 -33.83155 -33.35751 -31.83465 -31.42527 -30.17644 -28.16528 -27.04462 -26.01825 -24.15755 -23.71581 -22.88786 -22.02775 -20.13680 -18.72741 -18.36778 -17.82180 -17.16477 -17.09527 -17.04739 -16.58715 -16.34156 -16.09910 -15.79257 -15.35038 -14.97211 -14.67904 -14.33860 -14.31691 -14.10744 -14.02655 -13.56473 -13.38377 -13.16595 -13.13003 -12.99174 -12.84012 -12.79304 -12.63515 -12.47084 -12.25215 -12.10818 -12.06778 -12.01611 -11.55144 -11.30652 -10.59270 -10.43053 -9.98011 -9.70272 -9.50883 -8.46878 -7.86533 -5.43099 0.11970 0.20873 1.45756 1.47073 1.53416 1.92937 2.19232 2.50821 2.73635 3.21410 3.29240 3.68416 3.71702 3.76646 4.00647 4.12926 4.23399 4.35226 4.40434 4.47363 4.50050 4.62858 4.64544 4.76688 4.77354 4.86540 4.88750 4.92234 4.94878 5.05747 5.09566 5.10671 5.21410 5.33498 5.33863 5.46957 5.53235 5.63249 5.64881 5.73919 5.79619 5.91626 6.45953 6.56720 7.17253 7.47815 7.87647 8.39739 9.15946 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004752 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.544282 B = 5890.990966 C = 6660.989181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 N -0.578 5.578 4 C -0.270 4.270 5 H 0.043 0.957 6 C -0.024 4.024 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.288 1.288 12 C 0.171 3.829 13 H 0.098 0.902 14 C -0.136 4.136 15 C 0.491 3.509 16 O -0.570 6.570 17 N -0.616 5.616 18 C 0.065 3.935 19 C 0.154 3.846 20 C -0.081 4.081 21 C -0.121 4.121 22 C -0.099 4.099 23 C -0.155 4.155 24 C 0.076 3.924 25 F -0.146 7.146 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.044 0.956 32 H 0.255 0.745 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -1.898 12.183 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 N -0.298 5.298 4 C -0.401 4.401 5 H 0.061 0.939 6 C -0.222 4.222 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.214 1.214 12 C 0.060 3.940 13 H 0.116 0.884 14 C -0.194 4.194 15 C 0.279 3.721 16 O -0.448 6.448 17 N -0.350 5.350 18 C -0.077 4.077 19 C 0.031 3.969 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.174 4.174 24 C 0.057 3.943 25 F -0.124 7.124 26 C -0.158 4.158 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.962 -2.233 11.948 15.101 hybrid contribution 0.392 0.819 -1.173 1.483 sum 9.354 -1.414 10.775 14.339 Atomic orbital electron populations 1.22285 0.98168 1.00022 1.00876 1.20745 0.92434 0.85877 0.98261 1.43603 1.73867 1.10835 1.01536 1.19160 1.37595 0.93321 0.90006 0.93913 1.25764 0.97685 0.99009 0.99761 1.69948 1.41729 1.10885 1.32611 0.85563 0.77666 0.77914 0.80530 1.20517 1.20943 1.21412 1.20272 0.90195 0.97774 0.85771 0.88440 1.22159 0.98225 1.00749 0.98296 1.22951 0.85388 0.84485 0.79275 1.90503 1.64307 1.27130 1.62859 1.48162 1.36687 1.23233 1.26875 1.22243 1.01241 0.83320 1.00929 1.20479 0.81943 0.97301 0.97159 1.20273 0.96638 0.95267 0.96121 1.21392 0.95740 1.00646 0.96188 1.21259 0.94445 0.96277 0.99675 1.21385 1.02360 0.97169 0.96461 1.17856 0.92855 0.87651 0.95917 1.91474 1.80783 1.55473 1.84716 1.21173 0.93882 0.98196 1.02552 0.92114 0.93105 0.95111 0.95742 0.93711 0.93550 0.93760 0.90424 0.92582 0.93777 0.89790 0.87607 0.90392 0.86109 0.86534 0.83395 0.82931 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.23 9.94 71.98 0.72 -5.51 16 2 C 0.15 6.95 5.05 86.38 0.44 7.38 16 3 N -0.58 -29.34 2.11 -682.20 -1.44 -30.78 16 4 C -0.27 -15.07 9.53 84.04 0.80 -14.27 16 5 H 0.04 2.48 7.85 -2.91 -0.02 2.45 16 6 C -0.02 -1.31 5.04 84.86 0.43 -0.89 16 7 N -0.91 -48.77 10.86 21.66 0.24 -48.54 16 8 Si 0.95 44.30 29.57 68.60 2.03 46.33 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 C 0.17 7.67 1.38 44.24 0.06 7.73 16 13 H 0.10 4.92 5.48 -2.39 -0.01 4.91 16 14 C -0.14 -5.22 7.81 71.98 0.56 -4.65 16 15 C 0.49 20.15 6.80 87.66 0.60 20.75 16 16 O -0.57 -26.44 13.65 -3.04 -0.04 -26.48 16 17 N -0.62 -19.04 2.86 -851.14 -2.43 -21.47 16 18 C 0.06 1.60 9.84 127.77 1.26 2.86 16 19 C 0.15 3.89 5.54 85.64 0.47 4.36 16 20 C -0.08 -2.19 5.46 -19.87 -0.11 -2.30 16 21 C -0.12 -3.57 9.56 22.27 0.21 -3.35 16 22 C -0.10 -2.49 10.04 22.26 0.22 -2.27 16 23 C -0.15 -3.66 10.03 22.31 0.22 -3.43 16 24 C 0.08 1.91 7.30 22.38 0.16 2.07 16 25 F -0.15 -3.66 17.27 44.97 0.78 -2.89 16 26 C -0.14 -3.31 9.68 22.31 0.22 -3.09 16 27 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 2.02 5.76 -2.39 -0.01 2.00 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.04 1.99 6.57 -2.39 -0.02 1.98 16 32 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 33 H 0.04 1.66 5.78 -2.39 -0.01 1.64 16 34 H 0.08 2.40 5.32 -2.38 -0.01 2.38 16 35 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 2.28 4.15 -2.39 -0.01 2.27 16 38 H 0.11 1.69 7.88 -2.39 -0.02 1.67 16 39 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 40 H 0.12 2.05 7.83 -2.39 -0.02 2.03 16 41 H 0.12 3.89 7.39 -2.91 -0.02 3.87 16 42 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -65.19 354.89 6.39 -58.80 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.00 Total: 19.65 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.26 Total: 5.39 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -3.64 Total: -100.79 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.19 6.39 -58.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299373164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.922 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds