Wall clock time and date at job start Tue Mar 31 2020 09:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47354 * 2 1 4 4 N 1.32603 * 120.41723 * 269.97928 * 3 2 1 5 5 C 1.31712 * 121.02923 * 180.02562 * 4 3 2 6 6 N 1.31810 * 121.88478 * 359.97438 * 5 4 3 7 7 C 1.32908 * 120.70500 * 0.02562 * 6 5 4 8 8 N 1.38680 * 120.54105 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99793 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.46921 * 180.02562 * 9 8 7 11 11 C 1.53036 * 109.46205 * 295.06787 * 10 9 8 12 12 C 1.53188 * 109.31421 * 178.61481 * 11 10 9 13 13 N 1.46924 * 108.77548 * 54.63570 * 12 11 10 14 14 C 1.36936 * 120.63178 * 126.41578 * 13 12 11 15 15 H 1.07996 * 120.00077 * 331.82930 * 14 13 12 16 16 C 1.38809 * 120.00040 * 151.82435 * 14 13 12 17 17 N 1.31621 * 120.00532 * 343.07343 * 16 14 13 18 18 Si 1.86807 * 119.99942 * 163.06829 * 16 14 13 19 19 H 1.48497 * 109.46877 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47109 * 119.99993 * 18 16 14 21 21 H 1.48495 * 109.47172 * 240.00527 * 18 16 14 22 22 C 1.46924 * 118.74063 * 306.39124 * 13 12 11 23 23 C 1.53048 * 109.45628 * 174.99923 * 10 9 8 24 24 C 1.38237 * 120.41068 * 89.99539 * 3 2 1 25 25 F 1.35095 * 120.85841 * 0.25502 * 24 3 2 26 26 H 1.09005 * 109.47018 * 60.00145 * 1 2 3 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47487 * 300.00412 * 1 2 3 29 29 H 1.09001 * 109.47487 * 239.99588 * 2 1 3 30 30 H 1.09005 * 109.47018 * 119.99855 * 2 1 3 31 31 H 1.08008 * 119.06179 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00025 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47659 * 300.00056 * 9 8 7 34 34 H 1.09003 * 109.47420 * 60.00190 * 9 8 7 35 35 H 1.09001 * 109.45997 * 55.03203 * 10 9 8 36 36 H 1.08998 * 109.50067 * 298.56621 * 11 10 9 37 37 H 1.09000 * 109.49547 * 58.66277 * 11 10 9 38 38 H 1.09005 * 109.58598 * 294.84903 * 12 11 10 39 39 H 1.09001 * 109.70662 * 174.49274 * 12 11 10 40 40 H 0.96998 * 120.00484 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.58903 * 293.82275 * 22 13 12 42 42 H 1.08999 * 109.70819 * 173.46582 * 22 13 12 43 43 H 1.08997 * 109.49985 * 301.33506 * 23 10 9 44 44 H 1.09003 * 109.49446 * 61.40646 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2566 2.0536 -1.1435 5 6 2.6961 3.2952 -1.1576 6 7 2.9318 3.9629 -0.0459 7 6 2.7317 3.3981 1.1405 8 7 2.9813 4.1037 2.3080 9 6 3.4692 5.4833 2.2399 10 6 3.6621 6.0265 3.6572 11 6 2.3055 6.1094 4.3606 12 6 2.5065 6.6207 5.7905 13 7 3.2382 7.8938 5.7390 14 6 2.7425 9.0091 6.3599 15 1 1.6768 9.1256 6.4906 16 6 3.6097 9.9898 6.8214 17 7 4.8891 9.7195 6.9716 18 14 2.9610 11.6935 7.2291 19 1 1.4984 11.7397 6.9767 20 1 3.2259 11.9949 8.6588 21 1 3.6429 12.7000 6.3764 22 6 4.5122 7.9474 5.0091 23 6 4.2887 7.4211 3.5878 24 6 2.2655 2.0806 1.1922 25 9 2.0538 1.4666 2.3768 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8675 3.7803 -2.1072 32 1 2.8329 3.6836 3.1696 33 1 4.4212 5.5064 1.7097 34 1 2.7431 6.0998 1.7099 35 1 4.3201 5.3602 4.2151 36 1 1.6552 6.7948 3.8172 37 1 1.8494 5.1198 4.3889 38 1 3.0813 5.8918 6.3619 39 1 1.5376 6.7752 6.2653 40 1 5.4951 10.4049 7.2937 41 1 5.2506 7.3266 5.5166 42 1 4.8680 8.9767 4.9658 43 1 5.2441 7.3652 3.0661 44 1 3.6199 8.0941 3.0511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301987963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:06 Heat of formation + Delta-G solvation = 9.068172 kcal Electronic energy + Delta-G solvation = -25220.407028 eV Core-core repulsion = 21508.201730 eV Total energy + Delta-G solvation = -3712.205298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.08537 -41.04745 -38.35458 -36.47671 -34.83971 -33.42319 -31.81631 -31.02157 -30.20951 -29.54347 -26.86883 -25.11858 -24.15106 -23.81578 -22.29389 -21.63991 -21.06439 -19.24914 -18.54583 -17.86125 -17.48742 -16.72413 -16.37886 -15.45138 -15.12816 -14.83770 -14.62218 -14.42211 -14.19183 -14.08490 -13.76735 -13.54786 -13.47306 -13.26766 -12.93343 -12.51517 -12.36315 -12.14579 -11.93872 -11.66378 -11.42775 -11.31086 -11.16361 -10.93782 -10.75308 -10.54350 -10.27872 -10.21071 -9.95649 -9.83766 -9.57967 -9.51110 -9.33206 -8.49654 -8.20358 -6.69487 -5.81222 -3.23814 0.63879 1.01863 2.80502 3.35472 3.43583 3.45728 3.52866 3.69572 3.82242 4.06287 4.45855 4.47787 4.65308 4.93528 4.97211 5.02923 5.15518 5.21049 5.33364 5.37969 5.41213 5.53199 5.55743 5.68129 5.79043 5.81429 5.86025 5.96143 6.04771 6.17384 6.27930 6.40504 6.50053 6.55701 6.61914 6.71606 6.76126 6.86042 6.95697 7.31222 7.34640 7.62887 7.77866 8.00318 8.43009 9.19332 9.82640 10.39317 11.27350 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002584 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.131657 B =10832.844305 C =11163.115166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C 0.181 3.819 4 N -0.547 5.547 5 C 0.335 3.665 6 N -0.559 5.559 7 C 0.426 3.574 8 N -0.695 5.695 9 C 0.132 3.868 10 C -0.092 4.092 11 C -0.127 4.127 12 C 0.145 3.855 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.171 3.829 23 C -0.131 4.131 24 C -0.080 4.080 25 F -0.127 7.127 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.201 0.799 32 H 0.415 0.585 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 -17.223 -14.673 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C 0.038 3.962 4 N -0.266 5.266 5 C 0.046 3.954 6 N -0.284 5.284 7 C 0.178 3.822 8 N -0.326 5.326 9 C 0.009 3.991 10 C -0.111 4.111 11 C -0.167 4.167 12 C 0.019 3.981 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.046 3.954 23 C -0.171 4.171 24 C -0.111 4.111 25 F -0.106 7.106 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.218 0.782 32 H 0.253 0.747 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.312 -16.467 -15.374 22.937 hybrid contribution -0.384 0.349 1.562 1.646 sum -4.696 -16.119 -13.812 21.740 Atomic orbital electron populations 1.21679 0.93376 1.02530 1.02546 1.20507 0.97088 0.89525 1.04299 1.21544 0.91185 0.96976 0.86522 1.68294 1.19023 1.11222 1.28098 1.24732 0.88082 0.86606 0.95996 1.68113 1.24919 1.38524 0.96891 1.18763 0.88341 0.86587 0.88491 1.44862 1.68414 1.14905 1.04422 1.21671 0.99340 0.79561 0.98513 1.21347 0.98219 0.98432 0.93121 1.22074 0.95755 0.99382 0.99450 1.20883 0.96056 0.88735 0.92451 1.44057 1.22737 1.05407 1.59304 1.19224 0.91352 0.96133 1.31420 0.91704 1.25051 0.95951 0.99742 0.98949 1.70037 1.03024 1.32589 1.49125 0.86234 0.78364 0.84649 0.77606 1.20267 1.21731 1.21521 1.20764 0.87172 1.01373 0.86133 1.22167 0.98987 0.94178 1.01731 1.18554 1.15840 0.93266 0.83394 1.91463 1.93472 1.82259 1.43447 0.92011 0.91447 0.92464 0.89025 0.89652 0.78234 0.74707 0.91475 0.91275 0.91309 0.92106 0.93620 0.96614 0.92840 0.93671 0.96460 0.89336 0.93008 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.62 6.11 -27.88 -0.17 -0.79 16 3 C 0.18 1.98 6.07 -82.26 -0.50 1.48 16 4 N -0.55 -6.12 10.37 -10.84 -0.11 -6.24 16 5 C 0.34 3.57 12.28 -92.21 -1.13 2.44 16 6 N -0.56 -7.09 9.70 -13.74 -0.13 -7.22 16 7 C 0.43 5.49 7.52 -154.63 -1.16 4.33 16 8 N -0.69 -8.74 5.41 -60.19 -0.33 -9.06 16 9 C 0.13 1.77 5.12 -4.04 -0.02 1.75 16 10 C -0.09 -1.42 2.19 -90.57 -0.20 -1.62 16 11 C -0.13 -2.09 5.25 -26.62 -0.14 -2.23 16 12 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 13 N -0.59 -14.58 2.99 -172.32 -0.52 -15.09 16 14 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 17 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 18 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 23 C -0.13 -2.36 5.36 -26.60 -0.14 -2.50 16 24 C -0.08 -0.97 7.32 -38.98 -0.29 -1.25 16 25 F -0.13 -1.50 16.07 2.25 0.04 -1.46 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.64 7.71 -51.93 -0.40 0.23 16 31 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.41 4.89 7.22 -40.82 -0.29 4.59 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -30.04 358.12 -10.56 -40.60 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.84 Total: 1.16 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.66 Total: 0.79 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.47 Total: -63.02 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.04 -10.56 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301987963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.663 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds