Wall clock time and date at job start Tue Mar 31 2020 09:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47354 * 2 1 4 4 N 1.32603 * 120.41723 * 269.97928 * 3 2 1 5 5 C 1.31712 * 121.02923 * 180.02562 * 4 3 2 6 6 N 1.31810 * 121.88478 * 359.97438 * 5 4 3 7 7 C 1.32908 * 120.70500 * 0.02562 * 6 5 4 8 8 N 1.38680 * 120.54105 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99793 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.46921 * 180.02562 * 9 8 7 11 11 C 1.53036 * 109.46205 * 295.06787 * 10 9 8 12 12 C 1.53188 * 109.31421 * 178.61481 * 11 10 9 13 13 N 1.46924 * 108.77548 * 54.63570 * 12 11 10 14 14 C 1.36936 * 120.63178 * 126.41578 * 13 12 11 15 15 H 1.07996 * 120.00077 * 331.82930 * 14 13 12 16 16 C 1.38809 * 120.00040 * 151.82435 * 14 13 12 17 17 N 1.31621 * 120.00532 * 343.07343 * 16 14 13 18 18 Si 1.86807 * 119.99942 * 163.06829 * 16 14 13 19 19 H 1.48497 * 109.46877 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47109 * 119.99993 * 18 16 14 21 21 H 1.48495 * 109.47172 * 240.00527 * 18 16 14 22 22 C 1.46924 * 118.74063 * 306.39124 * 13 12 11 23 23 C 1.53048 * 109.45628 * 174.99923 * 10 9 8 24 24 C 1.38237 * 120.41068 * 89.99539 * 3 2 1 25 25 F 1.35095 * 120.85841 * 0.25502 * 24 3 2 26 26 H 1.09005 * 109.47018 * 60.00145 * 1 2 3 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47487 * 300.00412 * 1 2 3 29 29 H 1.09001 * 109.47487 * 239.99588 * 2 1 3 30 30 H 1.09005 * 109.47018 * 119.99855 * 2 1 3 31 31 H 1.08008 * 119.06179 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00025 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47659 * 300.00056 * 9 8 7 34 34 H 1.09003 * 109.47420 * 60.00190 * 9 8 7 35 35 H 1.09001 * 109.45997 * 55.03203 * 10 9 8 36 36 H 1.08998 * 109.50067 * 298.56621 * 11 10 9 37 37 H 1.09000 * 109.49547 * 58.66277 * 11 10 9 38 38 H 1.09005 * 109.58598 * 294.84903 * 12 11 10 39 39 H 1.09001 * 109.70662 * 174.49274 * 12 11 10 40 40 H 0.96998 * 120.00484 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.58903 * 293.82275 * 22 13 12 42 42 H 1.08999 * 109.70819 * 173.46582 * 22 13 12 43 43 H 1.08997 * 109.49985 * 301.33506 * 23 10 9 44 44 H 1.09003 * 109.49446 * 61.40646 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2566 2.0536 -1.1435 5 6 2.6961 3.2952 -1.1576 6 7 2.9318 3.9629 -0.0459 7 6 2.7317 3.3981 1.1405 8 7 2.9813 4.1037 2.3080 9 6 3.4692 5.4833 2.2399 10 6 3.6621 6.0265 3.6572 11 6 2.3055 6.1094 4.3606 12 6 2.5065 6.6207 5.7905 13 7 3.2382 7.8938 5.7390 14 6 2.7425 9.0091 6.3599 15 1 1.6768 9.1256 6.4906 16 6 3.6097 9.9898 6.8214 17 7 4.8891 9.7195 6.9716 18 14 2.9610 11.6935 7.2291 19 1 1.4984 11.7397 6.9767 20 1 3.2259 11.9949 8.6588 21 1 3.6429 12.7000 6.3764 22 6 4.5122 7.9474 5.0091 23 6 4.2887 7.4211 3.5878 24 6 2.2655 2.0806 1.1922 25 9 2.0538 1.4666 2.3768 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8675 3.7803 -2.1072 32 1 2.8329 3.6836 3.1696 33 1 4.4212 5.5064 1.7097 34 1 2.7431 6.0998 1.7099 35 1 4.3201 5.3602 4.2151 36 1 1.6552 6.7948 3.8172 37 1 1.8494 5.1198 4.3889 38 1 3.0813 5.8918 6.3619 39 1 1.5376 6.7752 6.2653 40 1 5.4951 10.4049 7.2937 41 1 5.2506 7.3266 5.5166 42 1 4.8680 8.9767 4.9658 43 1 5.2441 7.3652 3.0661 44 1 3.6199 8.0941 3.0511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301987963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:05 Heat of formation + Delta-G solvation = -6.617267 kcal Electronic energy + Delta-G solvation = -25221.087199 eV Core-core repulsion = 21508.201730 eV Total energy + Delta-G solvation = -3712.885469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.171 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.96520 -41.90865 -39.75638 -37.66976 -35.82682 -34.87033 -33.10895 -32.29208 -31.55545 -30.89942 -28.30023 -26.26950 -25.28673 -24.93704 -23.79944 -22.86411 -22.23639 -20.79538 -19.47942 -18.93722 -18.51907 -18.32158 -17.26332 -16.90211 -16.26056 -16.06300 -15.85959 -15.51761 -15.32877 -15.19378 -14.98686 -14.87700 -14.75226 -14.36726 -14.00598 -13.90735 -13.84850 -13.42954 -13.05343 -12.89004 -12.61294 -12.58541 -12.44701 -12.27026 -12.10472 -11.97978 -11.93074 -11.86907 -11.60621 -11.22936 -11.11427 -10.70239 -10.56113 -10.22517 -9.14306 -8.69026 -7.88938 -5.34296 -0.20016 0.12472 1.44637 1.46759 1.57064 1.85681 2.49984 2.67829 2.84546 3.05953 3.22720 3.26352 3.63597 3.68153 3.80868 3.88631 3.91477 4.07263 4.32250 4.34387 4.46496 4.50559 4.51242 4.65565 4.70903 4.72868 4.78700 4.91497 4.97588 4.99852 5.07157 5.08840 5.21860 5.25526 5.27403 5.35247 5.38272 5.52630 5.62380 5.64415 5.76647 5.90971 6.38407 6.41672 7.14225 7.14300 7.85862 8.36832 9.17389 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.002584 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.131657 B =10832.844305 C =11163.115166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C 0.180 3.820 4 N -0.553 5.553 5 C 0.334 3.666 6 N -0.576 5.576 7 C 0.414 3.586 8 N -0.696 5.696 9 C 0.151 3.849 10 C -0.081 4.081 11 C -0.113 4.113 12 C 0.140 3.860 13 N -0.611 5.611 14 C -0.262 4.262 15 H 0.064 0.936 16 C -0.051 4.051 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.289 1.289 22 C 0.176 3.824 23 C -0.118 4.118 24 C -0.092 4.092 25 F -0.128 7.128 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.418 0.582 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.050 0.950 40 H 0.250 0.750 41 H -0.004 1.004 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 -18.552 -16.315 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C 0.037 3.963 4 N -0.272 5.272 5 C 0.046 3.954 6 N -0.302 5.302 7 C 0.167 3.833 8 N -0.328 5.328 9 C 0.027 3.973 10 C -0.100 4.100 11 C -0.152 4.152 12 C 0.015 3.985 13 N -0.335 5.335 14 C -0.392 4.392 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.215 1.215 22 C 0.050 3.950 23 C -0.158 4.158 24 C -0.123 4.123 25 F -0.108 7.108 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.249 0.751 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.014 0.986 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.318 -17.829 -17.036 25.227 hybrid contribution -0.096 0.677 2.052 2.163 sum -5.414 -17.151 -14.984 23.410 Atomic orbital electron populations 1.21659 0.92644 1.03663 1.01760 1.20629 0.97580 0.87973 1.05217 1.22017 0.90162 0.98034 0.86126 1.68397 1.19197 1.11510 1.28119 1.25413 0.86862 0.86507 0.96651 1.68161 1.25623 1.39125 0.97264 1.18916 0.88718 0.87011 0.88625 1.44717 1.68903 1.14471 1.04717 1.21326 0.99476 0.80012 0.96470 1.21179 0.97376 0.96890 0.94601 1.21902 0.96391 1.00495 0.96444 1.21050 0.95253 0.87096 0.95151 1.44337 1.23249 1.06356 1.59583 1.19528 0.91465 0.97293 1.30920 0.91827 1.25790 0.96217 1.03092 0.99548 1.70183 1.04094 1.33384 1.50461 0.85236 0.78182 0.80296 0.76914 1.19206 1.21935 1.21543 1.20587 0.86337 0.99155 0.88873 1.21944 1.00323 0.95468 0.98042 1.18639 1.16600 0.93218 0.83795 1.91456 1.93566 1.82230 1.43500 0.92557 0.89400 0.93425 0.87909 0.88918 0.75130 0.74325 0.91112 0.91708 0.91083 0.92788 0.90665 0.96776 0.93125 0.94091 0.98575 0.92874 0.90947 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.08 -1.07 6.11 29.85 0.18 -0.89 16 3 C 0.18 3.61 6.07 42.44 0.26 3.87 16 4 N -0.55 -11.23 10.37 -188.22 -1.95 -13.18 16 5 C 0.33 6.38 12.28 180.90 2.22 8.60 16 6 N -0.58 -13.49 9.70 -197.38 -1.92 -15.41 16 7 C 0.41 9.96 7.52 133.20 1.00 10.96 16 8 N -0.70 -16.14 5.41 -344.34 -1.86 -18.00 16 9 C 0.15 3.73 5.12 86.38 0.44 4.17 16 10 C -0.08 -2.39 2.19 -10.76 -0.02 -2.41 16 11 C -0.11 -3.55 5.25 30.67 0.16 -3.39 16 12 C 0.14 5.67 6.52 86.36 0.56 6.23 16 13 N -0.61 -30.53 2.99 -699.10 -2.09 -32.62 16 14 C -0.26 -14.46 9.58 84.03 0.81 -13.66 16 15 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 16 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 17 N -0.93 -55.43 11.19 21.65 0.24 -55.19 16 18 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 C 0.18 8.36 5.30 86.36 0.46 8.81 16 23 C -0.12 -4.18 5.36 30.68 0.16 -4.01 16 24 C -0.09 -2.08 7.32 22.66 0.17 -1.91 16 25 F -0.13 -2.83 16.07 44.97 0.72 -2.11 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.18 7.71 -2.38 -0.02 1.16 16 31 H 0.23 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.42 8.99 7.22 -92.71 -0.67 8.32 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.94 7.15 -2.39 -0.02 1.92 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.41 358.12 3.03 -62.37 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.33 Total: 14.20 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.53 Total: 12.90 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -7.58 Total: -134.40 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.72 Total: -2.11 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.41 3.03 -62.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301987963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.756 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds