Wall clock time and date at job start Tue Mar 31 2020 10:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48501 * 109.46860 * 269.99619 * 3 2 1 5 5 H 1.48495 * 109.47347 * 29.99661 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99896 * 3 2 1 7 7 C 1.37884 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47293 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47029 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99705 * 179.97438 * 12 11 10 14 14 O 1.21583 * 120.00454 * 0.02562 * 13 12 11 15 15 N 1.34785 * 120.00031 * 180.02562 * 13 12 11 16 16 C 1.47222 * 135.96457 * 355.00897 * 15 13 12 17 17 C 1.52642 * 87.78085 * 206.37790 * 16 15 13 18 18 C 1.53321 * 115.56551 * 90.04554 * 17 16 15 19 19 C 1.55031 * 103.78671 * 133.66279 * 18 17 16 20 20 C 1.55061 * 102.13197 * 20.85836 * 19 18 17 21 21 O 1.42843 * 115.96781 * 218.40983 * 17 16 15 22 22 C 1.47211 * 135.97010 * 174.63812 * 15 13 12 23 23 H 1.09000 * 113.50362 * 268.35624 * 22 15 13 24 24 C 1.53010 * 113.49927 * 38.89668 * 22 15 13 25 25 C 1.52996 * 117.50017 * 246.78074 * 24 22 15 26 26 C 1.52994 * 117.49803 * 178.11718 * 24 22 15 27 27 H 0.97002 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47531 * 59.99592 * 9 7 2 29 29 H 1.08999 * 109.47240 * 299.99614 * 9 7 2 30 30 H 1.08999 * 109.47262 * 59.99954 * 10 9 7 31 31 H 1.08998 * 109.47341 * 299.99708 * 10 9 7 32 32 H 1.08999 * 109.46821 * 59.99909 * 11 10 9 33 33 H 1.08999 * 109.47385 * 300.00122 * 11 10 9 34 34 H 0.96997 * 120.00136 * 0.27982 * 12 11 10 35 35 H 1.08997 * 113.50170 * 321.10865 * 16 15 13 36 36 H 1.09010 * 113.49963 * 91.64873 * 16 15 13 37 37 H 1.09000 * 110.56348 * 252.24418 * 18 17 16 38 38 H 1.09004 * 110.56285 * 15.09277 * 18 17 16 39 39 H 1.09007 * 110.86461 * 139.01544 * 19 18 17 40 40 H 1.08994 * 110.86980 * 262.48656 * 19 18 17 41 41 H 1.09000 * 110.58761 * 82.01925 * 20 19 18 42 42 H 1.08994 * 110.58697 * 204.78526 * 20 19 18 43 43 H 1.09001 * 115.54766 * 32.45051 * 24 22 15 44 44 H 1.09008 * 117.49850 * 359.97438 * 25 24 22 45 45 H 1.08991 * 117.50234 * 145.02482 * 25 24 22 46 46 H 1.09000 * 117.50229 * 214.98446 * 26 24 22 47 47 H 1.09001 * 117.50123 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1007 0.0006 13 6 1.9826 -7.3713 0.0015 14 8 0.7872 -7.5935 0.0024 15 7 2.8584 -8.3959 0.0014 16 6 4.3209 -8.5380 -0.0885 17 6 4.0903 -9.9288 -0.6737 18 6 3.9656 -9.9919 -2.2005 19 6 4.8784 -11.1806 -2.5969 20 6 4.9750 -11.9745 -1.2685 21 8 5.0052 -10.9430 -0.2555 22 6 2.7718 -9.8623 0.0979 23 1 2.8464 -10.2359 1.1191 24 6 1.5854 -10.4549 -0.6653 25 6 0.4735 -11.1106 0.1560 26 6 1.4334 -11.9773 -0.6631 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 0.8530 -5.0451 -0.8886 33 1 0.8536 -5.0446 0.8914 34 1 3.3856 -5.9235 0.0040 35 1 4.7830 -7.8427 -0.7892 36 1 4.8168 -8.5516 0.8822 37 1 2.9339 -10.1873 -2.4926 38 1 4.3239 -9.0669 -2.6524 39 1 4.4135 -11.7838 -3.3769 40 1 5.8596 -10.8277 -2.9144 41 1 4.1012 -12.6130 -1.1391 42 1 5.8891 -12.5676 -1.2420 43 1 1.2948 -9.9214 -1.5703 44 1 0.5874 -11.1202 1.2400 45 1 -0.5485 -11.0090 -0.2089 46 1 1.0424 -12.4454 -1.5665 47 1 2.1787 -12.5567 -0.1183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454449881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:19 Heat of formation + Delta-G solvation = -16.776369 kcal Electronic energy + Delta-G solvation = -25733.991590 eV Core-core repulsion = 22111.833143 eV Total energy + Delta-G solvation = -3622.158447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61853 -39.19452 -37.54810 -36.39457 -35.25319 -33.25535 -32.47681 -31.31254 -29.60426 -27.17513 -26.64655 -25.68042 -22.98373 -22.68314 -22.16551 -21.47972 -20.73520 -20.45750 -19.00884 -17.93140 -16.88244 -16.54068 -16.38540 -16.05362 -15.63261 -15.16835 -14.95924 -14.69778 -14.45987 -14.02487 -13.88365 -13.72249 -13.50038 -13.24561 -12.49448 -12.27553 -12.23201 -11.90619 -11.80132 -11.74096 -11.67907 -11.63934 -11.50840 -10.89965 -10.88421 -10.71931 -10.61517 -10.58557 -10.51706 -10.03278 -9.84880 -9.67379 -9.42404 -9.11823 -8.96484 -8.51878 -8.36453 -6.01099 -4.04110 2.35997 3.21916 3.31153 3.37493 3.40347 3.51126 3.55657 3.96873 4.03773 4.19313 4.25500 4.45107 4.50395 4.56552 4.75436 4.80463 4.81296 4.96067 5.12098 5.17575 5.21519 5.26795 5.30448 5.34665 5.38153 5.43912 5.52260 5.55997 5.60374 5.71989 5.74930 5.78662 5.82688 5.93735 6.05200 6.19798 6.52745 6.55496 6.63461 6.87406 7.03324 7.28382 7.64739 7.77660 7.97907 8.15053 8.38940 8.77484 9.02588 9.59930 11.10239 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.002460 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.984488 B =11379.036996 C =12117.051740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.739 5.739 13 C 0.736 3.264 14 O -0.579 6.579 15 N -0.658 5.658 16 C 0.106 3.894 17 C 0.077 3.923 18 C -0.126 4.126 19 C -0.153 4.153 20 C 0.045 3.955 21 O -0.353 6.353 22 C 0.175 3.825 23 H 0.093 0.907 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.177 4.177 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -27.616 -3.688 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.393 5.393 13 C 0.439 3.561 14 O -0.455 6.455 15 N -0.400 5.400 16 C -0.018 4.018 17 C 0.036 3.964 18 C -0.163 4.163 19 C -0.191 4.191 20 C -0.031 4.031 21 O -0.270 6.270 22 C 0.070 3.930 23 H 0.111 0.889 24 C -0.168 4.168 25 C -0.200 4.200 26 C -0.214 4.214 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.605 -27.420 -3.488 29.262 hybrid contribution 0.779 1.144 -0.055 1.385 sum 10.384 -26.276 -3.543 28.475 Atomic orbital electron populations 1.69967 1.06060 1.26677 1.50575 1.25033 0.94857 0.99297 0.95299 0.86581 0.79803 0.83443 0.78082 1.20666 1.21204 1.19900 1.21203 0.92982 0.90943 1.50902 0.92662 1.19023 0.93841 0.90781 0.97688 1.21888 0.99787 0.93292 1.00812 1.21527 0.91245 0.84035 1.01882 1.45367 1.10499 1.04093 1.79293 1.15210 0.83765 0.79476 0.77684 1.90933 1.13157 1.83380 1.58076 1.48426 1.06702 1.05922 1.78940 1.22972 0.82788 0.94472 1.01586 1.23148 0.89646 0.89194 0.94447 1.22573 1.01876 0.99663 0.92189 1.23170 1.00713 0.96983 0.98232 1.23666 1.02332 0.90815 0.86315 1.88766 1.61613 1.31046 1.45562 1.22478 0.92931 0.78927 0.98662 0.88897 1.22275 0.98011 0.94533 1.02006 1.22894 0.95755 1.02968 0.98378 1.22968 1.03196 0.92371 1.02882 0.92927 0.96257 0.96231 0.92783 0.92798 0.91950 0.91933 0.77413 0.89706 0.89153 0.89201 0.89923 0.90012 0.90353 0.91628 0.88839 0.87129 0.88910 0.88644 0.88656 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.14 2.50 5.67 -4.04 -0.02 2.47 16 12 N -0.74 -11.45 5.56 -65.22 -0.36 -11.81 16 13 C 0.74 12.05 8.72 -86.91 -0.76 11.29 16 14 O -0.58 -11.69 16.48 5.29 0.09 -11.60 16 15 N -0.66 -8.24 3.52 -183.10 -0.65 -8.89 16 16 C 0.11 0.98 7.81 -8.05 -0.06 0.92 16 17 C 0.08 0.68 1.57 -90.69 -0.14 0.54 16 18 C -0.13 -0.95 6.27 -25.49 -0.16 -1.11 16 19 C -0.15 -0.86 7.17 -24.57 -0.18 -1.03 16 20 C 0.05 0.27 7.73 38.25 0.30 0.57 16 21 O -0.35 -3.11 11.32 -35.23 -0.40 -3.51 16 22 C 0.17 1.87 4.01 -71.81 -0.29 1.59 16 23 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 24 C -0.15 -1.58 3.53 -90.62 -0.32 -1.90 16 25 C -0.16 -1.68 10.24 -26.69 -0.27 -1.95 16 26 C -0.18 -1.39 9.95 -26.69 -0.27 -1.66 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 5.08 8.19 -40.82 -0.33 4.75 16 35 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 36 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.09 0.74 5.67 -51.93 -0.29 0.44 16 38 H 0.08 0.63 7.82 -51.93 -0.41 0.22 16 39 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 7.06 -51.93 -0.37 -0.01 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.11 1.35 7.20 -51.93 -0.37 0.97 16 44 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.66 7.40 -51.93 -0.38 0.27 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -33.28 379.76 -10.77 -44.05 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.03 Total: 1.51 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.86 Total: -5.78 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.27 Total: -46.96 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.31 Total: -15.11 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.28 -10.77 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454449881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.274 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds