Wall clock time and date at job start Tue Mar 31 2020 10:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48501 * 109.46860 * 269.99619 * 3 2 1 5 5 H 1.48495 * 109.47347 * 29.99661 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99896 * 3 2 1 7 7 C 1.37884 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47293 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47029 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99705 * 179.97438 * 12 11 10 14 14 O 1.21583 * 120.00454 * 0.02562 * 13 12 11 15 15 N 1.34785 * 120.00031 * 180.02562 * 13 12 11 16 16 C 1.47222 * 135.96457 * 355.00897 * 15 13 12 17 17 C 1.52642 * 87.78085 * 206.37790 * 16 15 13 18 18 C 1.53321 * 115.56551 * 90.04554 * 17 16 15 19 19 C 1.55031 * 103.78671 * 133.66279 * 18 17 16 20 20 C 1.55061 * 102.13197 * 20.85836 * 19 18 17 21 21 O 1.42843 * 115.96781 * 218.40983 * 17 16 15 22 22 C 1.47211 * 135.97010 * 174.63812 * 15 13 12 23 23 H 1.09000 * 113.50362 * 268.35624 * 22 15 13 24 24 C 1.53010 * 113.49927 * 38.89668 * 22 15 13 25 25 C 1.52996 * 117.50017 * 246.78074 * 24 22 15 26 26 C 1.52994 * 117.49803 * 178.11718 * 24 22 15 27 27 H 0.97002 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47531 * 59.99592 * 9 7 2 29 29 H 1.08999 * 109.47240 * 299.99614 * 9 7 2 30 30 H 1.08999 * 109.47262 * 59.99954 * 10 9 7 31 31 H 1.08998 * 109.47341 * 299.99708 * 10 9 7 32 32 H 1.08999 * 109.46821 * 59.99909 * 11 10 9 33 33 H 1.08999 * 109.47385 * 300.00122 * 11 10 9 34 34 H 0.96997 * 120.00136 * 0.27982 * 12 11 10 35 35 H 1.08997 * 113.50170 * 321.10865 * 16 15 13 36 36 H 1.09010 * 113.49963 * 91.64873 * 16 15 13 37 37 H 1.09000 * 110.56348 * 252.24418 * 18 17 16 38 38 H 1.09004 * 110.56285 * 15.09277 * 18 17 16 39 39 H 1.09007 * 110.86461 * 139.01544 * 19 18 17 40 40 H 1.08994 * 110.86980 * 262.48656 * 19 18 17 41 41 H 1.09000 * 110.58761 * 82.01925 * 20 19 18 42 42 H 1.08994 * 110.58697 * 204.78526 * 20 19 18 43 43 H 1.09001 * 115.54766 * 32.45051 * 24 22 15 44 44 H 1.09008 * 117.49850 * 359.97438 * 25 24 22 45 45 H 1.08991 * 117.50234 * 145.02482 * 25 24 22 46 46 H 1.09000 * 117.50229 * 214.98446 * 26 24 22 47 47 H 1.09001 * 117.50123 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1007 0.0006 13 6 1.9826 -7.3713 0.0015 14 8 0.7872 -7.5935 0.0024 15 7 2.8584 -8.3959 0.0014 16 6 4.3209 -8.5380 -0.0885 17 6 4.0903 -9.9288 -0.6737 18 6 3.9656 -9.9919 -2.2005 19 6 4.8784 -11.1806 -2.5969 20 6 4.9750 -11.9745 -1.2685 21 8 5.0052 -10.9430 -0.2555 22 6 2.7718 -9.8623 0.0979 23 1 2.8464 -10.2359 1.1191 24 6 1.5854 -10.4549 -0.6653 25 6 0.4735 -11.1106 0.1560 26 6 1.4334 -11.9773 -0.6631 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 0.8530 -5.0451 -0.8886 33 1 0.8536 -5.0446 0.8914 34 1 3.3856 -5.9235 0.0040 35 1 4.7830 -7.8427 -0.7892 36 1 4.8168 -8.5516 0.8822 37 1 2.9339 -10.1873 -2.4926 38 1 4.3239 -9.0669 -2.6524 39 1 4.4135 -11.7838 -3.3769 40 1 5.8596 -10.8277 -2.9144 41 1 4.1012 -12.6130 -1.1391 42 1 5.8891 -12.5676 -1.2420 43 1 1.2948 -9.9214 -1.5703 44 1 0.5874 -11.1202 1.2400 45 1 -0.5485 -11.0090 -0.2089 46 1 1.0424 -12.4454 -1.5665 47 1 2.1787 -12.5567 -0.1183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454449881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:18 Heat of formation + Delta-G solvation = -38.119874 kcal Electronic energy + Delta-G solvation = -25734.917113 eV Core-core repulsion = 22111.833143 eV Total energy + Delta-G solvation = -3623.083971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.43494 -40.33766 -38.34828 -37.25190 -36.85718 -35.16559 -33.12162 -32.98986 -30.66517 -28.52911 -27.64090 -26.74375 -24.72968 -23.41623 -22.73594 -22.35349 -22.17064 -21.69535 -20.04026 -18.95182 -18.49979 -17.70868 -17.30762 -17.06227 -16.61298 -16.43782 -16.22584 -16.05433 -15.56433 -15.19767 -15.11276 -14.49808 -14.29363 -14.20823 -14.16140 -13.73505 -13.53839 -13.22798 -12.83017 -12.75906 -12.55796 -12.46794 -12.45324 -12.38186 -12.30451 -12.06214 -11.68970 -11.66499 -11.46719 -11.43136 -11.24601 -11.22237 -11.07851 -10.55779 -10.40689 -10.25890 -9.63107 -8.19776 -6.31374 1.28588 1.41579 1.43028 1.54067 2.05916 2.41393 2.67618 2.79647 3.02228 3.13978 3.27409 3.47118 3.66749 3.78364 4.00156 4.01949 4.08512 4.12218 4.19247 4.20687 4.32145 4.38270 4.48062 4.51491 4.54394 4.66226 4.70866 4.76243 4.80962 4.91327 4.93754 4.97058 4.98013 5.01930 5.10208 5.14978 5.19809 5.22223 5.25261 5.44582 5.52811 5.69879 5.83551 5.93385 6.17033 6.22340 6.85634 6.97727 7.38142 7.52242 8.92494 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.002460 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.984488 B =11379.036996 C =12117.051740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.099 4.099 11 C 0.152 3.848 12 N -0.728 5.728 13 C 0.732 3.268 14 O -0.625 6.625 15 N -0.658 5.658 16 C 0.102 3.898 17 C 0.091 3.909 18 C -0.129 4.129 19 C -0.146 4.146 20 C 0.038 3.962 21 O -0.364 6.364 22 C 0.167 3.833 23 H 0.091 0.909 24 C -0.162 4.162 25 C -0.184 4.184 26 C -0.141 4.141 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.408 0.592 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.741 -28.754 -4.277 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.137 4.137 11 C 0.028 3.972 12 N -0.384 5.384 13 C 0.435 3.565 14 O -0.506 6.506 15 N -0.399 5.399 16 C -0.020 4.020 17 C 0.050 3.950 18 C -0.166 4.166 19 C -0.183 4.183 20 C -0.037 4.037 21 O -0.282 6.282 22 C 0.063 3.937 23 H 0.109 0.891 24 C -0.181 4.181 25 C -0.221 4.221 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.244 0.756 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.709 -28.604 -4.081 31.565 hybrid contribution -0.174 1.401 0.138 1.418 sum 12.535 -27.203 -3.943 30.210 Atomic orbital electron populations 1.70115 1.07976 1.27813 1.51676 1.26038 0.95753 1.03597 0.94765 0.85401 0.78666 0.78206 0.78488 1.19743 1.21043 1.18416 1.21672 0.93748 0.91957 1.50485 0.91510 1.18930 0.94404 0.92889 0.95094 1.21581 0.98441 0.91611 1.02061 1.21092 0.91240 0.84465 1.00451 1.45021 1.10756 1.03312 1.79281 1.15303 0.83631 0.80073 0.77503 1.90897 1.15423 1.84173 1.60067 1.48376 1.08089 1.06019 1.77420 1.23224 0.80624 0.95386 1.02776 1.22933 0.88296 0.89001 0.94807 1.22595 1.02007 1.00752 0.91265 1.23164 1.00639 0.96090 0.98425 1.23904 1.03668 0.90401 0.85749 1.88758 1.61158 1.31558 1.46725 1.22703 0.94311 0.77640 0.99044 0.89120 1.22184 0.98137 0.96454 1.01282 1.22925 0.95710 1.05078 0.98427 1.23035 1.01604 0.90587 1.02615 0.92798 0.98896 0.98988 0.91510 0.91314 0.93407 0.93607 0.75595 0.87978 0.88086 0.90002 0.89919 0.88540 0.89676 0.90897 0.87072 0.89135 0.89318 0.89599 0.87022 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.30 4.97 29.84 0.15 1.45 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 11 C 0.15 5.69 5.67 86.38 0.49 6.18 16 12 N -0.73 -22.37 5.56 -478.53 -2.66 -25.03 16 13 C 0.73 24.27 8.72 179.05 1.56 25.84 16 14 O -0.62 -26.29 16.48 -3.98 -0.07 -26.36 16 15 N -0.66 -16.20 3.52 -852.60 -3.00 -19.21 16 16 C 0.10 1.72 7.81 83.39 0.65 2.37 16 17 C 0.09 1.44 1.57 -10.83 -0.02 1.42 16 18 C -0.13 -1.71 6.27 31.40 0.20 -1.52 16 19 C -0.15 -1.20 7.17 32.00 0.23 -0.97 16 20 C 0.04 0.35 7.73 72.69 0.56 0.91 16 21 O -0.36 -5.49 11.32 -148.98 -1.69 -7.18 16 22 C 0.17 3.48 4.01 42.09 0.17 3.64 16 23 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 24 C -0.16 -3.39 3.53 -10.79 -0.04 -3.43 16 25 C -0.18 -3.86 10.24 30.62 0.31 -3.54 16 26 C -0.14 -2.00 9.95 30.62 0.30 -1.70 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.41 9.92 8.19 -92.71 -0.76 9.16 16 35 H 0.10 1.37 7.91 -2.39 -0.02 1.36 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.08 1.25 5.67 -2.39 -0.01 1.23 16 38 H 0.08 1.10 7.82 -2.38 -0.02 1.08 16 39 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.55 7.06 -2.39 -0.02 0.53 16 42 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 2.28 7.20 -2.39 -0.02 2.26 16 44 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 1.23 7.40 -2.39 -0.02 1.22 16 Total: -1.00 -73.75 379.76 0.52 -73.23 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.19 Total: 18.95 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.43 Total: -3.09 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -5.38 Total: -101.64 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.75 Total: -33.54 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.75 0.52 -73.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454449881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.110 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds