Wall clock time and date at job start Tue Mar 31 2020 09:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.54893 * 2 1 4 4 C 1.53152 * 109.62738 * 239.76098 * 2 1 3 5 5 C 1.53028 * 109.44685 * 169.71308 * 4 2 1 6 6 C 1.52130 * 108.72926 * 51.22189 * 5 4 2 7 7 N 1.32527 * 124.20791 * 162.76048 * 6 5 4 8 8 C 1.28668 * 117.87961 * 180.26373 * 7 6 5 9 9 C 1.50701 * 124.92599 * 179.76480 * 8 7 6 10 10 N 1.46901 * 109.46921 * 89.69863 * 9 8 7 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47178 * 299.99807 * 12 11 10 14 14 C 1.52994 * 109.47368 * 59.99997 * 12 11 10 15 15 C 1.50705 * 109.47244 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99351 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00102 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00153 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99783 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47157 * 59.99722 * 19 17 15 21 21 H 1.48495 * 109.47123 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47105 * 299.99877 * 19 17 15 23 23 S 1.70911 * 110.14280 * 359.50128 * 8 7 6 24 24 C 1.34621 * 122.64175 * 342.46713 * 6 5 4 25 25 C 1.50999 * 125.22190 * 359.95070 * 24 6 5 26 26 H 1.08999 * 109.47216 * 299.80332 * 1 2 3 27 27 H 1.09007 * 109.47064 * 59.80212 * 1 2 3 28 28 H 1.09000 * 109.47404 * 179.79717 * 1 2 3 29 29 H 1.09002 * 109.47406 * 289.70949 * 4 2 1 30 30 H 1.09001 * 109.47752 * 49.71696 * 4 2 1 31 31 H 1.08995 * 109.59615 * 170.99217 * 5 4 2 32 32 H 1.09001 * 109.59572 * 291.45103 * 5 4 2 33 33 H 1.09002 * 109.47060 * 209.70044 * 9 8 7 34 34 H 1.09001 * 109.47380 * 329.70132 * 9 8 7 35 35 H 1.00899 * 111.00283 * 303.95218 * 10 9 8 36 36 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 37 37 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 38 38 H 1.09001 * 109.46911 * 60.00265 * 13 12 11 39 39 H 1.08997 * 109.47727 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.47026 * 300.00608 * 13 12 11 41 41 H 1.08995 * 109.47367 * 60.00021 * 14 12 11 42 42 H 1.09006 * 109.47425 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47167 * 300.00007 * 14 12 11 44 44 H 0.97003 * 120.00239 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.61391 * 103.66878 * 25 24 6 46 46 H 1.09000 * 109.62108 * 224.20659 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0445 -0.7265 -1.2463 5 6 3.5529 -0.5053 -1.3786 6 6 4.2159 -0.8556 -0.0549 7 7 5.5118 -1.0928 0.0895 8 6 5.9426 -1.3839 1.2664 9 6 7.3787 -1.6863 1.6092 10 7 8.0703 -0.4398 1.9641 11 6 9.4758 -0.6965 2.3056 12 6 10.1613 0.6220 2.6694 13 6 10.0926 1.5785 1.4771 14 6 9.4516 1.2516 3.8697 15 6 11.6034 0.3588 3.0191 16 1 11.9919 -0.6483 2.9856 17 6 12.4266 1.4037 3.3817 18 7 11.9536 2.6301 3.4220 19 14 14.2139 1.0773 3.8158 20 1 14.9024 0.4656 2.6510 21 1 14.8792 2.3570 4.1688 22 1 14.2806 0.1495 4.9735 23 16 4.6513 -1.3705 2.3859 24 6 3.5289 -0.9493 1.0990 25 6 2.0429 -0.7265 1.2483 26 1 -0.3633 0.5108 0.8917 27 1 -0.3633 0.5169 -0.8883 28 1 -0.3634 -1.0276 -0.0036 29 1 1.8401 -1.7933 -1.1553 30 1 1.5407 -0.3340 -2.1296 31 1 3.9486 -1.1462 -2.1664 32 1 3.7494 0.5391 -1.6207 33 1 7.4135 -2.3744 2.4538 34 1 7.8694 -2.1418 0.7490 35 1 7.9965 0.2389 1.2212 36 1 9.5248 -1.3775 3.1552 37 1 9.9813 -1.1454 1.4505 38 1 9.0497 1.7689 1.2238 39 1 10.5813 2.5177 1.7361 40 1 10.5981 1.1299 0.6219 41 1 9.5006 0.5703 4.7191 42 1 9.9403 2.1908 4.1292 43 1 8.4087 1.4420 3.6164 44 1 12.5328 3.3653 3.6768 45 1 1.5370 -1.6870 1.3466 46 1 1.8511 -0.1169 2.1313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:50 Heat of formation + Delta-G solvation = 15.567597 kcal Electronic energy + Delta-G solvation = -22981.360681 eV Core-core repulsion = 19803.357644 eV Total energy + Delta-G solvation = -3178.003036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22702 -37.55288 -36.71393 -34.07502 -31.79770 -31.15218 -30.42664 -27.72879 -25.54794 -25.43448 -25.16676 -24.10311 -23.27042 -21.95959 -20.71002 -18.54714 -18.48681 -17.89660 -15.99872 -15.48567 -15.37838 -14.97633 -14.68336 -14.51784 -14.35250 -14.03240 -13.65663 -13.42975 -13.16490 -12.76950 -12.64021 -12.35893 -12.23435 -12.14860 -11.81109 -11.74073 -11.66213 -11.15197 -11.08603 -10.97833 -10.88650 -10.64259 -10.61418 -10.52518 -10.17007 -10.05477 -9.50292 -9.37102 -9.13406 -9.08782 -8.64034 -8.50430 -8.27822 -7.79801 -5.89946 -4.00589 0.77220 1.42764 1.88157 2.80900 3.33814 3.38626 3.41112 3.97115 4.43722 4.44905 4.48110 4.51366 4.82564 4.92090 5.03802 5.17276 5.22724 5.27520 5.31400 5.35456 5.37663 5.42747 5.56300 5.61165 5.69993 5.75873 5.76828 5.85194 6.02370 6.07120 6.26444 6.29314 6.37440 6.71512 6.89585 7.07940 7.18021 7.37722 7.44791 7.65988 7.76873 7.81923 7.83362 7.91927 8.21555 8.34789 8.56097 9.00447 9.64283 11.10626 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.032701 B = 0.002588 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.033005 B =10815.777721 C =10881.268143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.039 4.039 6 C 0.067 3.933 7 N -0.477 5.477 8 C 0.070 3.930 9 C 0.131 3.869 10 N -0.680 5.680 11 C 0.075 3.925 12 C 0.070 3.930 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.507 4.507 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 S 0.137 5.863 24 C -0.241 4.241 25 C -0.032 4.032 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.344 0.656 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.010 0.990 39 H 0.084 0.916 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.259 0.741 45 H 0.078 0.922 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.193 -6.944 -6.480 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.079 4.079 6 C -0.065 4.065 7 N -0.191 5.191 8 C -0.209 4.209 9 C -0.002 4.002 10 N -0.314 5.314 11 C -0.053 4.053 12 C 0.070 3.930 13 C -0.191 4.191 14 C -0.178 4.178 15 C -0.546 4.546 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 S 0.395 5.605 24 C -0.362 4.362 25 C -0.072 4.072 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.029 0.971 39 H 0.102 0.898 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.093 0.907 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.969 -6.957 -5.082 23.598 hybrid contribution 1.200 -0.154 -1.367 1.825 sum -20.769 -7.111 -6.448 22.880 Atomic orbital electron populations 1.21819 0.94535 1.01970 1.02003 1.21211 0.95600 0.99970 0.94167 0.90524 1.21635 0.94535 1.01021 0.97891 1.20330 0.93647 1.02222 0.91654 1.20815 0.87497 1.02187 0.96027 1.65841 1.14608 1.15195 1.23494 1.26781 1.01269 1.02233 0.90639 1.20488 0.85026 0.94494 1.00157 1.60702 1.16390 1.08480 1.45799 1.22214 0.84183 1.00784 0.98100 1.18080 0.93314 0.88946 0.92681 1.21845 0.96517 1.03371 0.97364 1.21649 0.96719 1.01950 0.97441 1.21056 0.94402 0.93490 1.45648 0.92981 1.24884 0.98133 0.95161 0.95389 1.69823 1.35269 0.98871 1.48367 0.86707 0.85366 0.77342 0.78816 1.20466 1.21379 1.20395 1.83884 0.99335 1.64128 1.13178 1.26011 1.01237 1.13109 0.95848 1.20177 0.87381 1.00902 0.98746 0.92452 0.92326 0.92541 0.91553 0.90860 0.90020 0.90071 0.89343 0.92693 0.83594 0.92226 0.96408 0.97123 0.89758 0.96120 0.96221 0.90687 0.96174 0.93119 0.90363 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.18 37.16 0.34 -0.49 16 2 C -0.09 -0.68 2.73 -90.40 -0.25 -0.93 16 3 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 4 C -0.11 -0.86 5.18 -26.64 -0.14 -1.00 16 5 C -0.04 -0.39 6.29 -27.16 -0.17 -0.56 16 6 C 0.07 0.89 6.78 -82.86 -0.56 0.33 16 7 N -0.48 -7.53 10.51 -7.32 -0.08 -7.61 16 8 C 0.07 1.06 6.90 -13.60 -0.09 0.97 16 9 C 0.13 2.04 6.26 -4.97 -0.03 2.01 16 10 N -0.68 -12.58 5.70 -115.05 -0.66 -13.23 16 11 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 12 C 0.07 1.71 0.57 -155.66 -0.09 1.63 16 13 C -0.13 -3.22 7.92 37.16 0.29 -2.93 16 14 C -0.12 -2.95 8.09 37.15 0.30 -2.65 16 15 C -0.51 -13.67 8.01 -34.44 -0.28 -13.94 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 18 N -0.88 -24.65 9.35 55.43 0.52 -24.14 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 S 0.14 1.79 23.17 -107.50 -2.49 -0.70 16 24 C -0.24 -2.93 6.39 -35.44 -0.23 -3.16 16 25 C -0.03 -0.29 5.58 -27.60 -0.15 -0.44 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.34 6.65 6.77 -39.29 -0.27 6.39 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 39 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 2.02 6.07 -51.93 -0.32 1.70 16 43 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -28.60 368.48 -11.26 -39.87 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.93 Total: 2.01 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.16 Total: -17.92 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.21 Total: -44.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.60 -11.26 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.434 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds