Wall clock time and date at job start Tue Mar 31 2020 09:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.54893 * 2 1 4 4 C 1.53152 * 109.62738 * 239.76098 * 2 1 3 5 5 C 1.53028 * 109.44685 * 169.71308 * 4 2 1 6 6 C 1.52130 * 108.72926 * 51.22189 * 5 4 2 7 7 N 1.32527 * 124.20791 * 162.76048 * 6 5 4 8 8 C 1.28668 * 117.87961 * 180.26373 * 7 6 5 9 9 C 1.50701 * 124.92599 * 179.76480 * 8 7 6 10 10 N 1.46901 * 109.46921 * 89.69863 * 9 8 7 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47178 * 299.99807 * 12 11 10 14 14 C 1.52994 * 109.47368 * 59.99997 * 12 11 10 15 15 C 1.50705 * 109.47244 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99351 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00102 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00153 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99783 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47157 * 59.99722 * 19 17 15 21 21 H 1.48495 * 109.47123 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47105 * 299.99877 * 19 17 15 23 23 S 1.70911 * 110.14280 * 359.50128 * 8 7 6 24 24 C 1.34621 * 122.64175 * 342.46713 * 6 5 4 25 25 C 1.50999 * 125.22190 * 359.95070 * 24 6 5 26 26 H 1.08999 * 109.47216 * 299.80332 * 1 2 3 27 27 H 1.09007 * 109.47064 * 59.80212 * 1 2 3 28 28 H 1.09000 * 109.47404 * 179.79717 * 1 2 3 29 29 H 1.09002 * 109.47406 * 289.70949 * 4 2 1 30 30 H 1.09001 * 109.47752 * 49.71696 * 4 2 1 31 31 H 1.08995 * 109.59615 * 170.99217 * 5 4 2 32 32 H 1.09001 * 109.59572 * 291.45103 * 5 4 2 33 33 H 1.09002 * 109.47060 * 209.70044 * 9 8 7 34 34 H 1.09001 * 109.47380 * 329.70132 * 9 8 7 35 35 H 1.00899 * 111.00283 * 303.95218 * 10 9 8 36 36 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 37 37 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 38 38 H 1.09001 * 109.46911 * 60.00265 * 13 12 11 39 39 H 1.08997 * 109.47727 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.47026 * 300.00608 * 13 12 11 41 41 H 1.08995 * 109.47367 * 60.00021 * 14 12 11 42 42 H 1.09006 * 109.47425 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47167 * 300.00007 * 14 12 11 44 44 H 0.97003 * 120.00239 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.61391 * 103.66878 * 25 24 6 46 46 H 1.09000 * 109.62108 * 224.20659 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0445 -0.7265 -1.2463 5 6 3.5529 -0.5053 -1.3786 6 6 4.2159 -0.8556 -0.0549 7 7 5.5118 -1.0928 0.0895 8 6 5.9426 -1.3839 1.2664 9 6 7.3787 -1.6863 1.6092 10 7 8.0703 -0.4398 1.9641 11 6 9.4758 -0.6965 2.3056 12 6 10.1613 0.6220 2.6694 13 6 10.0926 1.5785 1.4771 14 6 9.4516 1.2516 3.8697 15 6 11.6034 0.3588 3.0191 16 1 11.9919 -0.6483 2.9856 17 6 12.4266 1.4037 3.3817 18 7 11.9536 2.6301 3.4220 19 14 14.2139 1.0773 3.8158 20 1 14.9024 0.4656 2.6510 21 1 14.8792 2.3570 4.1688 22 1 14.2806 0.1495 4.9735 23 16 4.6513 -1.3705 2.3859 24 6 3.5289 -0.9493 1.0990 25 6 2.0429 -0.7265 1.2483 26 1 -0.3633 0.5108 0.8917 27 1 -0.3633 0.5169 -0.8883 28 1 -0.3634 -1.0276 -0.0036 29 1 1.8401 -1.7933 -1.1553 30 1 1.5407 -0.3340 -2.1296 31 1 3.9486 -1.1462 -2.1664 32 1 3.7494 0.5391 -1.6207 33 1 7.4135 -2.3744 2.4538 34 1 7.8694 -2.1418 0.7490 35 1 7.9965 0.2389 1.2212 36 1 9.5248 -1.3775 3.1552 37 1 9.9813 -1.1454 1.4505 38 1 9.0497 1.7689 1.2238 39 1 10.5813 2.5177 1.7361 40 1 10.5981 1.1299 0.6219 41 1 9.5006 0.5703 4.7191 42 1 9.9403 2.1908 4.1292 43 1 8.4087 1.4420 3.6164 44 1 12.5328 3.3653 3.6768 45 1 1.5370 -1.6870 1.3466 46 1 1.8511 -0.1169 2.1313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459684246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:50 Heat of formation + Delta-G solvation = 0.619496 kcal Electronic energy + Delta-G solvation = -22982.008879 eV Core-core repulsion = 19803.357644 eV Total energy + Delta-G solvation = -3178.651235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18916 -38.85688 -37.94917 -35.68505 -33.22039 -32.23772 -31.48109 -28.90220 -27.53416 -27.24856 -26.37172 -25.14467 -24.60194 -22.91102 -21.50960 -20.38543 -19.46305 -18.91099 -17.89906 -17.03989 -16.46626 -16.28695 -15.87219 -15.80817 -15.24165 -15.06410 -14.94557 -14.41306 -14.31035 -14.17905 -13.93883 -13.75352 -13.33262 -13.23904 -13.05182 -12.93510 -12.86322 -12.63173 -12.55371 -12.47655 -12.30785 -12.13805 -12.06949 -11.73275 -11.49056 -11.33365 -11.26117 -11.04130 -10.62591 -10.52915 -10.34492 -10.13376 -9.54880 -9.28423 -7.96380 -6.13540 -0.27432 0.41515 0.84124 1.44693 1.45039 1.52049 1.75139 2.46969 2.95703 3.25896 3.49984 3.75641 3.81428 3.86161 3.97148 4.15730 4.26152 4.46212 4.51129 4.54122 4.56622 4.62918 4.64527 4.72692 4.77862 4.84341 4.90904 4.97082 4.99873 5.07871 5.14405 5.17993 5.22150 5.26082 5.37521 5.41165 5.42026 5.51531 5.52662 5.69588 5.74941 6.04816 6.16945 6.28812 6.40566 6.53192 6.81477 6.95203 7.54038 9.01954 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.032701 B = 0.002588 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.033005 B =10815.777721 C =10881.268143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.039 4.039 6 C 0.041 3.959 7 N -0.499 5.499 8 C 0.042 3.958 9 C 0.136 3.864 10 N -0.680 5.680 11 C 0.089 3.911 12 C 0.062 3.938 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.526 4.526 16 H 0.049 0.951 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.274 1.274 23 S 0.152 5.848 24 C -0.230 4.230 25 C -0.035 4.035 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.339 0.661 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.048 0.952 43 H 0.030 0.970 44 H 0.257 0.743 45 H 0.094 0.906 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.067 -7.694 -6.713 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.090 4.090 7 N -0.215 5.215 8 C -0.236 4.236 9 C 0.003 3.997 10 N -0.313 5.313 11 C -0.039 4.039 12 C 0.061 3.939 13 C -0.180 4.180 14 C -0.164 4.164 15 C -0.564 4.564 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 S 0.409 5.591 24 C -0.352 4.352 25 C -0.075 4.075 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.849 -7.720 -5.317 25.625 hybrid contribution 1.693 0.083 -1.303 2.138 sum -22.156 -7.637 -6.619 24.352 Atomic orbital electron populations 1.21781 0.92756 1.02660 1.02647 1.21204 0.96948 0.99170 0.93364 0.91399 1.21629 0.92631 1.01334 0.98851 1.20448 0.95248 1.02025 0.90129 1.21332 0.86981 1.02958 0.97772 1.65844 1.16147 1.15372 1.24119 1.26620 1.01514 1.04108 0.91404 1.20457 0.85329 0.93209 1.00655 1.60618 1.14935 1.09891 1.45882 1.21896 0.85347 0.98678 0.98017 1.18124 0.92680 0.90623 0.92480 1.21683 0.97125 1.01963 0.97203 1.21477 0.96982 1.00475 0.97469 1.21391 0.95935 0.93372 1.45739 0.93318 1.25558 1.01669 0.95072 0.95490 1.69964 1.36266 0.99372 1.48785 0.85801 0.81145 0.77158 0.78593 1.20118 1.21229 1.19954 1.83742 0.98772 1.63672 1.12908 1.26510 1.02679 1.10997 0.94970 1.20390 0.85130 1.02096 0.99840 0.92091 0.91484 0.91814 0.91301 0.88845 0.90149 0.90188 0.88006 0.92809 0.84258 0.92077 0.96705 0.95514 0.92395 0.96422 0.96572 0.93265 0.95129 0.93325 0.88747 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 71.98 0.66 -0.52 16 2 C -0.09 -1.10 2.73 -10.65 -0.03 -1.13 16 3 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 4 C -0.11 -1.37 5.18 30.65 0.16 -1.21 16 5 C -0.04 -0.74 6.29 30.32 0.19 -0.55 16 6 C 0.04 1.06 6.78 42.08 0.29 1.34 16 7 N -0.50 -15.64 10.51 -177.08 -1.86 -17.50 16 8 C 0.04 1.25 6.90 88.57 0.61 1.86 16 9 C 0.14 4.16 6.26 85.56 0.54 4.70 16 10 N -0.68 -24.85 5.70 -517.92 -2.95 -27.80 16 11 C 0.09 3.70 4.59 86.30 0.40 4.09 16 12 C 0.06 3.00 0.57 -52.93 -0.03 2.97 16 13 C -0.12 -5.94 7.92 71.98 0.57 -5.37 16 14 C -0.11 -5.24 8.09 71.98 0.58 -4.66 16 15 C -0.53 -28.41 8.01 25.60 0.21 -28.21 16 16 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 17 C 0.02 1.15 5.15 84.66 0.44 1.59 16 18 N -0.90 -51.04 9.35 21.45 0.20 -50.84 16 19 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 S 0.15 3.80 23.17 -56.49 -1.31 2.49 16 24 C -0.23 -5.26 6.39 24.95 0.16 -5.10 16 25 C -0.03 -0.53 5.58 30.03 0.17 -0.37 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 30 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.34 13.00 6.77 -89.69 -0.61 12.39 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.03 1.17 6.57 -2.39 -0.02 1.15 16 39 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 2.68 6.07 -2.38 -0.01 2.66 16 43 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 44 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -60.80 368.48 1.35 -59.45 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.35 Total: 19.23 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.90 Total: -30.56 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.61 Total: -96.14 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.31 Total: 2.49 kcal Total: -60.80 1.35 -59.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.065 kcal (2) G-P(sol) polarization free energy of solvation -60.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds