Wall clock time and date at job start Tue Mar 31 2020 09:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.53005 * 109.47045 * 119.99212 * 2 1 3 5 5 C 1.50697 * 109.47366 * 295.00545 * 4 2 1 6 6 H 1.08003 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00289 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00345 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46878 * 59.99528 * 9 7 5 11 11 H 1.48494 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46927 * 300.00097 * 9 7 5 13 13 C 1.53001 * 109.47406 * 239.99270 * 2 1 3 14 14 N 1.46900 * 109.46907 * 63.83992 * 13 2 1 15 15 C 1.46954 * 110.99945 * 199.58317 * 14 13 2 16 16 C 1.53046 * 109.36617 * 176.80878 * 15 14 13 17 17 N 1.46954 * 109.36272 * 58.40129 * 16 15 14 18 18 C 1.46905 * 110.99871 * 176.81058 * 17 16 15 19 19 C 1.50693 * 109.47129 * 313.80025 * 18 17 16 20 20 C 1.38428 * 122.54176 * 269.73373 * 19 18 17 21 21 C 1.33388 * 114.91870 * 179.76198 * 20 19 18 22 22 S 1.75880 * 109.59561 * 0.47913 * 21 20 19 23 23 C 1.33392 * 122.54117 * 90.02836 * 19 18 17 24 24 C 1.46953 * 110.88410 * 300.67922 * 17 16 15 25 25 C 1.46954 * 111.00167 * 75.78286 * 14 13 2 26 26 H 1.08998 * 109.46588 * 65.39589 * 1 2 3 27 27 H 1.09007 * 109.46766 * 185.39129 * 1 2 3 28 28 H 1.08996 * 109.47324 * 305.39471 * 1 2 3 29 29 H 1.09006 * 109.47156 * 55.00263 * 4 2 1 30 30 H 1.09001 * 109.47248 * 175.00043 * 4 2 1 31 31 H 0.97003 * 120.00288 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47188 * 303.83839 * 13 2 1 33 33 H 1.09001 * 109.47066 * 183.83954 * 13 2 1 34 34 H 1.09002 * 109.48844 * 296.78274 * 15 14 13 35 35 H 1.09006 * 109.48742 * 56.84170 * 15 14 13 36 36 H 1.09001 * 109.49165 * 298.43612 * 16 15 14 37 37 H 1.09005 * 109.49164 * 178.36846 * 16 15 14 38 38 H 1.09000 * 109.46716 * 73.80371 * 18 17 16 39 39 H 1.08997 * 109.47066 * 193.79839 * 18 17 16 40 40 H 1.08000 * 122.53423 * 359.97438 * 20 19 18 41 41 H 1.08001 * 125.19723 * 180.20505 * 21 20 19 42 42 H 1.08003 * 125.19748 * 359.97438 * 23 19 18 43 43 H 1.09005 * 109.48765 * 299.35486 * 24 17 16 44 44 H 1.08997 * 109.49329 * 179.28714 * 24 17 16 45 45 H 1.09005 * 109.48843 * 303.15704 * 25 14 13 46 46 H 1.09001 * 109.48570 * 63.19969 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9748 2.3756 7 6 1.9931 -0.4013 3.7284 8 7 2.6763 -1.5183 3.8514 9 14 1.4994 0.5638 5.2496 10 1 0.0194 0.6705 5.3095 11 1 1.9943 -0.1361 6.4621 12 1 2.0915 1.9243 5.1864 13 6 2.0401 -0.7214 -1.2491 14 7 1.6276 0.0224 -2.4468 15 6 1.6760 -0.8331 -3.6407 16 6 1.1646 -0.0464 -4.8498 17 7 1.9895 1.1559 -5.0332 18 6 1.5770 1.8997 -6.2310 19 6 1.4020 0.9421 -7.3814 20 6 2.4337 0.6212 -8.2467 21 6 2.1119 -0.2457 -9.2080 22 16 0.4186 -0.6954 -9.0540 23 6 0.2396 0.3439 -7.6465 24 6 1.9412 2.0114 -3.8394 25 6 2.4525 1.2247 -2.6302 26 1 -0.3632 0.4279 -0.9344 27 1 -0.3633 -1.0232 0.0966 28 1 -0.3634 0.5952 0.8377 29 1 1.6054 -1.7197 1.2954 30 1 3.1263 -0.7993 1.2058 31 1 2.9236 -1.8412 4.7320 32 1 1.6217 -1.7273 -1.2841 33 1 3.1279 -0.7813 -1.2153 34 1 2.7036 -1.1489 -3.8204 35 1 1.0476 -1.7101 -3.4853 36 1 0.1281 0.2460 -4.6816 37 1 1.2268 -0.6696 -5.7420 38 1 0.6334 2.4090 -6.0353 39 1 2.3412 2.6349 -6.4832 40 1 3.4250 1.0385 -8.1486 41 1 2.7868 -0.6118 -9.9675 42 1 -0.6719 0.4771 -7.0827 43 1 0.9135 2.3272 -3.6597 44 1 2.5695 2.8884 -3.9948 45 1 2.3904 1.8479 -1.7381 46 1 3.4891 0.9323 -2.7981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602437792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:29 Heat of formation + Delta-G solvation = 35.688763 kcal Electronic energy + Delta-G solvation = -23174.565258 eV Core-core repulsion = 19997.434741 eV Total energy + Delta-G solvation = -3177.130517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79482 -38.20288 -36.02381 -33.92753 -31.99463 -31.01845 -30.08717 -28.29892 -26.75976 -25.68892 -24.09021 -23.49491 -22.73649 -22.01118 -19.70531 -19.02933 -18.80621 -17.75353 -16.53775 -16.04100 -15.74137 -15.06417 -14.87689 -14.61321 -14.30905 -14.24070 -14.08354 -13.50730 -13.29286 -13.07098 -12.88410 -12.53658 -12.30565 -12.19751 -12.04338 -11.84421 -11.44010 -11.26334 -11.19607 -11.06455 -10.83263 -10.79828 -10.70339 -10.64430 -10.26303 -10.20406 -9.56720 -9.10412 -9.05375 -8.92930 -8.73903 -8.37707 -8.29486 -7.95338 -5.94500 -3.95453 0.71425 1.38382 1.70585 2.38735 3.36179 3.40458 3.42983 3.91970 4.18375 4.51041 4.54250 4.68989 4.92838 5.05577 5.09292 5.15337 5.27187 5.32575 5.38137 5.41223 5.48279 5.51656 5.59467 5.73679 5.76757 5.83510 5.93570 5.99939 6.07286 6.10994 6.16827 6.21828 6.22452 6.42673 6.58816 6.75646 6.88078 6.94442 7.07603 7.19583 7.24854 7.43171 7.49156 7.73169 7.89957 8.06060 8.50460 9.10819 9.67639 11.17032 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.002309 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.597026 B =12122.807982 C =12298.795564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.057 3.943 16 C 0.058 3.942 17 N -0.534 5.534 18 C 0.113 3.887 19 C -0.095 4.095 20 C -0.116 4.116 21 C -0.216 4.216 22 S 0.090 5.910 23 C -0.207 4.207 24 C 0.059 3.941 25 C 0.057 3.943 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 4.394 -27.140 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.070 4.070 17 N -0.259 5.259 18 C -0.017 4.017 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.351 4.351 22 S 0.354 5.646 23 C -0.344 4.344 24 C -0.069 4.069 25 C -0.071 4.071 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.159 0.841 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.441 3.300 -27.828 28.234 hybrid contribution 0.765 1.282 1.713 2.272 sum -2.676 4.582 -26.116 26.649 Atomic orbital electron populations 1.21558 0.95911 1.00534 0.99812 1.21164 0.95812 0.98973 0.93649 0.92789 1.19135 0.95886 0.95524 0.90521 1.21195 1.34527 1.08232 0.90991 0.92683 1.25021 0.95381 0.95113 0.99066 1.69957 1.39109 1.21248 1.23425 0.86697 0.78882 0.80111 0.82536 1.20300 1.21402 1.20328 1.22303 0.97607 0.97098 0.89584 1.62196 1.53974 1.07121 1.02775 1.22143 0.99829 0.95550 0.89659 1.22253 0.94879 0.91957 0.97945 1.62287 1.53939 1.07270 1.02378 1.20782 0.99835 0.93682 0.87386 1.18840 0.92698 1.00831 0.98470 1.20072 1.00407 0.99324 0.94836 1.25595 0.98839 1.05303 1.05346 1.84309 1.07193 1.45916 1.27187 1.25560 1.02422 1.04098 1.02294 1.22187 1.00292 0.95276 0.89122 1.22153 0.94935 0.92736 0.97279 0.93877 0.94286 0.93144 0.96663 0.96989 0.93078 0.91545 0.95081 0.94512 0.90609 0.94310 0.90266 0.93899 0.89768 0.84088 0.81933 0.82053 0.93915 0.90518 0.89696 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.86 37.16 0.33 -2.05 16 2 C -0.08 -1.59 2.39 -90.62 -0.22 -1.81 16 3 H 0.05 1.14 6.77 -51.93 -0.35 0.78 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.43 8.47 -34.44 -0.29 -14.73 16 6 H 0.05 1.52 7.06 -52.48 -0.37 1.14 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.08 4.40 -3.82 -0.02 1.07 16 14 N -0.54 -8.12 3.95 -234.47 -0.93 -9.05 16 15 C 0.06 0.76 5.56 -3.77 -0.02 0.74 16 16 C 0.06 0.67 4.72 -3.77 -0.02 0.65 16 17 N -0.53 -5.95 4.85 -235.91 -1.14 -7.09 16 18 C 0.11 1.03 5.55 -4.98 -0.03 1.01 16 19 C -0.10 -0.86 4.06 -106.25 -0.43 -1.29 16 20 C -0.12 -0.98 9.98 -41.21 -0.41 -1.39 16 21 C -0.22 -1.66 11.23 29.04 0.33 -1.33 16 22 S 0.09 0.70 23.34 -107.50 -2.51 -1.80 16 23 C -0.21 -1.76 9.19 29.04 0.27 -1.50 16 24 C 0.06 0.68 5.58 -3.77 -0.02 0.66 16 25 C 0.06 0.80 5.43 -3.77 -0.02 0.78 16 26 H 0.04 0.77 7.57 -51.93 -0.39 0.38 16 27 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.05 1.05 7.12 -51.93 -0.37 0.68 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.18 7.84 -51.93 -0.41 0.77 16 33 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.89 5.85 -51.93 -0.30 0.58 16 38 H 0.04 0.38 8.06 -51.93 -0.42 -0.03 16 39 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.25 6.73 -51.93 -0.35 0.90 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -30.10 370.37 -12.06 -42.16 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.00 Total: -3.03 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -0.78 Total: -17.14 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -1.34 Total: -42.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.10 -12.06 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.851 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds