Wall clock time and date at job start Tue Mar 31 2020 09:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.53005 * 109.47045 * 119.99212 * 2 1 3 5 5 C 1.50697 * 109.47366 * 295.00545 * 4 2 1 6 6 H 1.08003 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00289 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00345 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46878 * 59.99528 * 9 7 5 11 11 H 1.48494 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46927 * 300.00097 * 9 7 5 13 13 C 1.53001 * 109.47406 * 239.99270 * 2 1 3 14 14 N 1.46900 * 109.46907 * 63.83992 * 13 2 1 15 15 C 1.46954 * 110.99945 * 199.58317 * 14 13 2 16 16 C 1.53046 * 109.36617 * 176.80878 * 15 14 13 17 17 N 1.46954 * 109.36272 * 58.40129 * 16 15 14 18 18 C 1.46905 * 110.99871 * 176.81058 * 17 16 15 19 19 C 1.50693 * 109.47129 * 313.80025 * 18 17 16 20 20 C 1.38428 * 122.54176 * 269.73373 * 19 18 17 21 21 C 1.33388 * 114.91870 * 179.76198 * 20 19 18 22 22 S 1.75880 * 109.59561 * 0.47913 * 21 20 19 23 23 C 1.33392 * 122.54117 * 90.02836 * 19 18 17 24 24 C 1.46953 * 110.88410 * 300.67922 * 17 16 15 25 25 C 1.46954 * 111.00167 * 75.78286 * 14 13 2 26 26 H 1.08998 * 109.46588 * 65.39589 * 1 2 3 27 27 H 1.09007 * 109.46766 * 185.39129 * 1 2 3 28 28 H 1.08996 * 109.47324 * 305.39471 * 1 2 3 29 29 H 1.09006 * 109.47156 * 55.00263 * 4 2 1 30 30 H 1.09001 * 109.47248 * 175.00043 * 4 2 1 31 31 H 0.97003 * 120.00288 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47188 * 303.83839 * 13 2 1 33 33 H 1.09001 * 109.47066 * 183.83954 * 13 2 1 34 34 H 1.09002 * 109.48844 * 296.78274 * 15 14 13 35 35 H 1.09006 * 109.48742 * 56.84170 * 15 14 13 36 36 H 1.09001 * 109.49165 * 298.43612 * 16 15 14 37 37 H 1.09005 * 109.49164 * 178.36846 * 16 15 14 38 38 H 1.09000 * 109.46716 * 73.80371 * 18 17 16 39 39 H 1.08997 * 109.47066 * 193.79839 * 18 17 16 40 40 H 1.08000 * 122.53423 * 359.97438 * 20 19 18 41 41 H 1.08001 * 125.19723 * 180.20505 * 21 20 19 42 42 H 1.08003 * 125.19748 * 359.97438 * 23 19 18 43 43 H 1.09005 * 109.48765 * 299.35486 * 24 17 16 44 44 H 1.08997 * 109.49329 * 179.28714 * 24 17 16 45 45 H 1.09005 * 109.48843 * 303.15704 * 25 14 13 46 46 H 1.09001 * 109.48570 * 63.19969 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9748 2.3756 7 6 1.9931 -0.4013 3.7284 8 7 2.6763 -1.5183 3.8514 9 14 1.4994 0.5638 5.2496 10 1 0.0194 0.6705 5.3095 11 1 1.9943 -0.1361 6.4621 12 1 2.0915 1.9243 5.1864 13 6 2.0401 -0.7214 -1.2491 14 7 1.6276 0.0224 -2.4468 15 6 1.6760 -0.8331 -3.6407 16 6 1.1646 -0.0464 -4.8498 17 7 1.9895 1.1559 -5.0332 18 6 1.5770 1.8997 -6.2310 19 6 1.4020 0.9421 -7.3814 20 6 2.4337 0.6212 -8.2467 21 6 2.1119 -0.2457 -9.2080 22 16 0.4186 -0.6954 -9.0540 23 6 0.2396 0.3439 -7.6465 24 6 1.9412 2.0114 -3.8394 25 6 2.4525 1.2247 -2.6302 26 1 -0.3632 0.4279 -0.9344 27 1 -0.3633 -1.0232 0.0966 28 1 -0.3634 0.5952 0.8377 29 1 1.6054 -1.7197 1.2954 30 1 3.1263 -0.7993 1.2058 31 1 2.9236 -1.8412 4.7320 32 1 1.6217 -1.7273 -1.2841 33 1 3.1279 -0.7813 -1.2153 34 1 2.7036 -1.1489 -3.8204 35 1 1.0476 -1.7101 -3.4853 36 1 0.1281 0.2460 -4.6816 37 1 1.2268 -0.6696 -5.7420 38 1 0.6334 2.4090 -6.0353 39 1 2.3412 2.6349 -6.4832 40 1 3.4250 1.0385 -8.1486 41 1 2.7868 -0.6118 -9.9675 42 1 -0.6719 0.4771 -7.0827 43 1 0.9135 2.3272 -3.6597 44 1 2.5695 2.8884 -3.9948 45 1 2.3904 1.8479 -1.7381 46 1 3.4891 0.9323 -2.7981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:28 Heat of formation + Delta-G solvation = 18.301211 kcal Electronic energy + Delta-G solvation = -23175.319239 eV Core-core repulsion = 19997.434741 eV Total energy + Delta-G solvation = -3177.884498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70910 -39.13272 -37.33916 -35.46746 -33.90883 -31.98069 -30.95391 -29.40588 -28.57113 -26.92489 -25.47598 -24.55822 -23.94758 -23.15021 -20.78031 -20.49354 -19.63727 -18.51580 -18.38238 -17.25853 -16.57211 -16.45017 -16.15026 -15.87063 -15.62684 -15.41013 -15.21874 -14.78186 -14.34638 -14.14210 -13.90549 -13.75371 -13.56986 -13.27947 -13.17713 -13.07034 -12.78531 -12.73975 -12.60203 -12.43024 -12.24514 -12.21715 -12.08570 -11.86919 -11.76979 -11.54857 -11.33547 -11.05124 -10.84875 -10.51758 -9.70434 -9.41849 -9.26869 -9.11446 -8.16278 -6.25458 0.10493 0.79176 1.10767 1.40404 1.43315 1.50954 1.74896 2.42652 2.95998 3.08015 3.16906 3.86533 3.93379 3.99652 4.08957 4.20084 4.28842 4.38657 4.41086 4.44177 4.54340 4.55419 4.59717 4.62738 4.66738 4.83899 4.86245 4.87318 4.90903 4.93912 4.98620 5.08904 5.13753 5.15076 5.29454 5.48826 5.49940 5.50589 5.56438 5.58411 5.81408 5.89952 5.98844 6.03134 6.18592 6.24242 6.33433 6.90290 7.42636 8.95621 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.002309 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.597026 B =12122.807982 C =12298.795564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.066 4.066 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.073 3.927 14 N -0.536 5.536 15 C 0.056 3.944 16 C 0.068 3.932 17 N -0.541 5.541 18 C 0.116 3.884 19 C -0.105 4.105 20 C -0.130 4.130 21 C -0.216 4.216 22 S 0.096 5.904 23 C -0.215 4.215 24 C 0.067 3.933 25 C 0.056 3.944 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.036 0.964 29 H -0.011 1.011 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.182 0.818 42 H 0.168 0.832 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 5.665 -28.368 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.054 4.054 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.060 4.060 17 N -0.266 5.266 18 C -0.013 4.013 19 C -0.118 4.118 20 C -0.160 4.160 21 C -0.351 4.351 22 S 0.359 5.641 23 C -0.352 4.352 24 C -0.061 4.061 25 C -0.072 4.072 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.008 0.992 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.166 0.834 41 H 0.199 0.801 42 H 0.185 0.815 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.218 4.585 -29.083 29.743 hybrid contribution 1.033 0.848 2.024 2.426 sum -3.185 5.433 -27.059 27.782 Atomic orbital electron populations 1.21438 0.94744 1.00106 1.00379 1.20951 0.96580 0.98306 0.92703 0.93000 1.19023 0.93976 0.94675 0.92814 1.21592 1.34391 1.08540 0.92035 0.92154 1.25961 0.95286 0.96125 1.02661 1.70099 1.40300 1.22970 1.24304 0.85564 0.78934 0.78789 0.78155 1.19230 1.21046 1.19214 1.22014 0.96721 0.96924 0.89790 1.62155 1.53975 1.07434 1.02494 1.22206 0.99655 0.95807 0.89513 1.22126 0.94643 0.92143 0.97063 1.62278 1.54112 1.07346 1.02865 1.20796 1.00369 0.93696 0.86465 1.18904 0.93057 1.01155 0.98681 1.20223 1.00761 0.99866 0.95144 1.25884 0.98994 1.04784 1.05470 1.84307 1.07428 1.45554 1.26787 1.25708 1.02633 1.04184 1.02654 1.22109 1.00403 0.95357 0.88222 1.22186 0.94529 0.92265 0.98235 0.91599 0.94814 0.94475 0.99219 0.99785 0.92963 0.91671 0.96204 0.95236 0.90203 0.94431 0.89627 0.93477 0.88717 0.83380 0.80097 0.81486 0.94073 0.88648 0.90660 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 8.86 71.98 0.64 -3.61 16 2 C -0.07 -2.78 2.39 -10.79 -0.03 -2.80 16 3 H 0.05 2.19 6.77 -2.39 -0.02 2.17 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.19 8.47 25.60 0.22 -29.97 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.07 2.62 4.40 86.30 0.38 3.00 16 14 N -0.54 -15.82 3.95 -895.72 -3.54 -19.36 16 15 C 0.06 1.44 5.56 86.31 0.48 1.92 16 16 C 0.07 1.47 4.72 86.31 0.41 1.87 16 17 N -0.54 -11.00 4.85 -900.30 -4.37 -15.37 16 18 C 0.12 1.87 5.55 85.55 0.47 2.34 16 19 C -0.10 -1.69 4.06 -20.92 -0.08 -1.77 16 20 C -0.13 -1.96 9.98 21.22 0.21 -1.75 16 21 C -0.22 -2.90 11.23 66.72 0.75 -2.15 16 22 S 0.10 1.33 23.34 -56.49 -1.32 0.01 16 23 C -0.22 -3.29 9.19 66.72 0.61 -2.68 16 24 C 0.07 1.42 5.58 86.31 0.48 1.90 16 25 C 0.06 1.52 5.43 86.31 0.47 1.99 16 26 H 0.07 2.25 7.57 -2.39 -0.02 2.23 16 27 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.04 1.51 7.12 -2.39 -0.02 1.50 16 29 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.06 2.33 7.84 -2.39 -0.02 2.31 16 33 H 0.02 0.74 8.00 -2.39 -0.02 0.73 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.97 8.00 -2.38 -0.02 1.95 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.76 5.85 -2.38 -0.01 1.74 16 38 H 0.05 0.73 8.06 -2.39 -0.02 0.71 16 39 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 2.17 6.73 -2.38 -0.02 2.15 16 46 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.41 370.37 -0.38 -64.79 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.93 Total: 10.16 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 5.61 Total: -29.55 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -7.63 Total: -92.33 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -64.41 -0.38 -64.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.094 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds