Wall clock time and date at job start Tue Mar 31 2020 09:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47279 * 2 1 4 4 C 1.53005 * 109.47057 * 240.00535 * 2 1 3 5 5 C 1.53003 * 109.47251 * 174.99858 * 4 2 1 6 6 C 1.50696 * 109.47219 * 179.97438 * 5 4 2 7 7 C 1.38424 * 122.53378 * 89.99998 * 6 5 4 8 8 C 1.33395 * 114.91900 * 179.97438 * 7 6 5 9 9 S 1.75887 * 109.59120 * 0.02562 * 8 7 6 10 10 C 1.33381 * 122.54108 * 269.71188 * 6 5 4 11 11 N 1.46895 * 109.47631 * 120.00253 * 2 1 3 12 12 C 1.46901 * 110.99998 * 275.00068 * 11 2 1 13 13 C 1.53032 * 109.46049 * 275.02220 * 12 11 2 14 14 C 1.53193 * 109.31179 * 178.60141 * 13 12 11 15 15 N 1.46925 * 108.76687 * 54.65693 * 14 13 12 16 16 C 1.36939 * 120.63177 * 126.35985 * 15 14 13 17 17 H 1.08003 * 119.99753 * 331.86620 * 16 15 14 18 18 C 1.38810 * 119.99796 * 151.86238 * 16 15 14 19 19 N 1.31622 * 120.00305 * 343.06567 * 18 16 15 20 20 Si 1.86801 * 119.99749 * 163.06259 * 18 16 15 21 21 H 1.48492 * 109.47274 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47180 * 120.00163 * 20 18 16 23 23 H 1.48494 * 109.47337 * 239.99986 * 20 18 16 24 24 C 1.46922 * 118.73746 * 306.38315 * 15 14 13 25 25 C 1.53048 * 109.45867 * 154.96542 * 12 11 2 26 26 H 1.08999 * 109.46652 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47245 * 59.99643 * 1 2 3 28 28 H 1.08994 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47129 * 294.99553 * 4 2 1 30 30 H 1.08994 * 109.47114 * 54.99636 * 4 2 1 31 31 H 1.09000 * 109.46805 * 299.99893 * 5 4 2 32 32 H 1.09006 * 109.47057 * 59.99446 * 5 4 2 33 33 H 1.07998 * 122.54170 * 359.95859 * 7 6 5 34 34 H 1.07997 * 125.20490 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20819 * 0.02562 * 10 6 5 36 36 H 1.00894 * 111.00324 * 151.04225 * 11 2 1 37 37 H 1.08998 * 109.46051 * 34.99757 * 12 11 2 38 38 H 1.09004 * 109.49821 * 298.56656 * 13 12 11 39 39 H 1.08998 * 109.49827 * 58.66389 * 13 12 11 40 40 H 1.09004 * 109.59900 * 294.86652 * 14 13 12 41 41 H 1.09000 * 109.70393 * 174.50781 * 14 13 12 42 42 H 0.96999 * 120.00050 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58894 * 293.81901 * 24 15 14 44 44 H 1.08999 * 109.70381 * 173.46551 * 24 15 14 45 45 H 1.08997 * 109.49884 * 301.33959 * 25 12 11 46 46 H 1.09003 * 109.49005 * 61.43682 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3139 6 6 4.0672 -1.3240 -2.5440 7 6 4.2194 -0.6855 -3.7627 8 6 4.6752 -1.4589 -4.7494 9 16 4.9381 -3.0902 -4.1465 10 6 4.4041 -2.6146 -2.5396 11 7 2.0198 -0.6925 1.1993 12 6 2.0826 0.2225 2.3468 13 6 3.4113 0.9813 2.3217 14 6 3.4584 1.9595 3.4997 15 7 3.2123 1.2152 4.7423 16 6 4.0896 1.2980 5.7906 17 1 5.1339 1.5023 5.6059 18 6 3.6365 1.1193 7.0904 19 7 2.3502 1.2032 7.3565 20 14 4.8525 0.7596 8.4621 21 1 6.2285 0.7174 7.9054 22 1 4.7679 1.8270 9.4911 23 1 4.5278 -0.5508 9.0805 24 6 2.0074 0.3801 4.8387 25 6 1.9763 -0.5803 3.6455 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7517 -1.7714 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 3.8531 0.4371 -1.3575 32 1 3.9995 -1.0727 -0.4261 33 1 3.9866 0.3596 -3.9041 34 1 4.8552 -1.1333 -5.7632 35 1 4.3543 -3.2682 -1.6814 36 1 2.9173 -1.1205 1.0286 37 1 1.2577 0.9328 2.2905 38 1 4.2361 0.2734 2.4032 39 1 3.4968 1.5343 1.3863 40 1 2.6903 2.7224 3.3724 41 1 4.4393 2.4328 3.5454 42 1 2.0336 1.0780 8.2648 43 1 1.1210 1.0140 4.8207 44 1 2.0294 -0.1910 5.7668 45 1 1.0405 -1.1389 3.6524 46 1 2.8149 -1.2733 3.7143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613235959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:01 Heat of formation + Delta-G solvation = 38.029220 kcal Electronic energy + Delta-G solvation = -23304.311642 eV Core-core repulsion = 20127.282615 eV Total energy + Delta-G solvation = -3177.029027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.07609 -38.13125 -36.16655 -33.36380 -31.68416 -30.61500 -29.80441 -28.71501 -28.14307 -25.07088 -24.35847 -22.59322 -22.12896 -21.41891 -20.18126 -19.15197 -18.89925 -17.79005 -16.80686 -15.78702 -15.62999 -15.04230 -14.65692 -14.07554 -13.81115 -13.69748 -13.45806 -13.25593 -13.14503 -12.98005 -12.79122 -12.61546 -12.53021 -12.28526 -12.07486 -11.67439 -11.39326 -11.28426 -11.13583 -11.04090 -10.89980 -10.75234 -10.67645 -10.52668 -10.18786 -10.13301 -9.92790 -9.66955 -9.40413 -9.02280 -8.57806 -8.45729 -7.99023 -6.63434 -5.75811 -3.18163 0.78794 1.44495 1.76683 2.48115 3.38721 3.46549 3.48759 4.41292 4.52142 4.57115 4.73283 4.93676 4.99251 5.04364 5.28284 5.33880 5.38519 5.45428 5.50128 5.54224 5.61671 5.66405 5.71921 5.78064 5.80508 5.90485 5.95583 6.01145 6.11145 6.19086 6.24895 6.31247 6.35159 6.37995 6.55500 6.66765 6.70485 6.75274 6.89959 6.98308 7.41262 7.46824 7.71221 7.75977 7.83135 8.48814 9.24997 9.88511 10.45512 11.32680 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.002671 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.636081 B =10479.648523 C =11190.798088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.043 0.957 4 C -0.112 4.112 5 C -0.066 4.066 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.214 4.214 9 S 0.082 5.918 10 C -0.209 4.209 11 N -0.684 5.684 12 C 0.096 3.904 13 C -0.159 4.159 14 C 0.150 3.850 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.335 0.665 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.016 0.984 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -5.726 -23.381 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 H 0.061 0.939 4 C -0.150 4.150 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.159 4.159 8 C -0.350 4.350 9 S 0.345 5.655 10 C -0.344 4.344 11 N -0.316 5.316 12 C -0.014 4.014 13 C -0.199 4.199 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.215 1.215 24 C 0.044 3.956 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.596 -7.360 -23.724 24.847 hybrid contribution 0.891 1.688 1.076 2.191 sum 1.487 -5.672 -22.648 23.395 Atomic orbital electron populations 1.21777 0.94820 1.02063 1.00968 1.21504 0.95709 0.96079 0.89505 0.93928 1.21743 0.93858 1.01814 0.97603 1.20427 0.95988 1.00017 0.94131 1.18966 1.01801 0.93583 0.96388 1.20139 1.02421 1.01329 0.92053 1.25582 1.09190 0.96593 1.03594 1.84273 1.65972 1.11396 1.03848 1.25510 1.08894 0.99396 1.00577 1.60826 1.33130 1.33496 1.04131 1.21547 0.96327 0.93014 0.90467 1.22684 0.98316 1.00099 0.98848 1.20806 0.98414 0.92085 0.86457 1.44070 1.25420 1.50274 1.11748 1.19218 0.89442 1.44444 0.84951 0.91800 1.25042 0.95871 1.01500 0.97292 1.70045 1.12628 1.52885 1.19155 0.86244 0.80756 0.77692 0.82218 1.20300 1.21770 1.21549 1.20793 0.87836 0.91293 0.95630 1.22167 1.00405 0.98883 0.94964 0.92569 0.93165 0.92240 0.91038 0.91491 0.90914 0.90742 0.84307 0.82030 0.81784 0.84512 0.91357 0.92380 0.93711 0.96722 0.93063 0.93716 0.96625 0.89458 0.92816 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.40 37.16 0.35 -1.24 16 2 C 0.08 0.96 2.46 -67.71 -0.17 0.79 16 3 H 0.04 0.53 7.11 -51.93 -0.37 0.16 16 4 C -0.11 -1.10 4.79 -26.73 -0.13 -1.22 16 5 C -0.07 -0.63 5.30 -27.88 -0.15 -0.77 16 6 C -0.10 -0.92 5.05 -106.25 -0.54 -1.45 16 7 C -0.13 -1.14 9.98 -41.21 -0.41 -1.55 16 8 C -0.21 -1.75 11.23 29.04 0.33 -1.42 16 9 S 0.08 0.69 23.34 -107.50 -2.51 -1.82 16 10 C -0.21 -1.96 10.98 29.04 0.32 -1.64 16 11 N -0.68 -9.46 6.06 -99.70 -0.60 -10.06 16 12 C 0.10 1.61 2.24 -67.67 -0.15 1.46 16 13 C -0.16 -2.73 5.31 -26.62 -0.14 -2.87 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 16 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 17 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 20 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 25 C -0.12 -2.43 5.69 -26.61 -0.15 -2.58 16 26 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.34 4.43 6.22 -39.30 -0.24 4.19 16 37 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.04 0.67 7.41 -51.93 -0.38 0.29 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -29.32 370.67 -11.42 -40.74 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.86 Total: 2.46 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.11 Total: -12.42 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.50 Total: -51.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.32 -11.42 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613235959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.772 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds