Wall clock time and date at job start Tue Mar 31 2020 09:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47279 * 2 1 4 4 C 1.53005 * 109.47057 * 240.00535 * 2 1 3 5 5 C 1.53003 * 109.47251 * 174.99858 * 4 2 1 6 6 C 1.50696 * 109.47219 * 179.97438 * 5 4 2 7 7 C 1.38424 * 122.53378 * 89.99998 * 6 5 4 8 8 C 1.33395 * 114.91900 * 179.97438 * 7 6 5 9 9 S 1.75887 * 109.59120 * 0.02562 * 8 7 6 10 10 C 1.33381 * 122.54108 * 269.71188 * 6 5 4 11 11 N 1.46895 * 109.47631 * 120.00253 * 2 1 3 12 12 C 1.46901 * 110.99998 * 275.00068 * 11 2 1 13 13 C 1.53032 * 109.46049 * 275.02220 * 12 11 2 14 14 C 1.53193 * 109.31179 * 178.60141 * 13 12 11 15 15 N 1.46925 * 108.76687 * 54.65693 * 14 13 12 16 16 C 1.36939 * 120.63177 * 126.35985 * 15 14 13 17 17 H 1.08003 * 119.99753 * 331.86620 * 16 15 14 18 18 C 1.38810 * 119.99796 * 151.86238 * 16 15 14 19 19 N 1.31622 * 120.00305 * 343.06567 * 18 16 15 20 20 Si 1.86801 * 119.99749 * 163.06259 * 18 16 15 21 21 H 1.48492 * 109.47274 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47180 * 120.00163 * 20 18 16 23 23 H 1.48494 * 109.47337 * 239.99986 * 20 18 16 24 24 C 1.46922 * 118.73746 * 306.38315 * 15 14 13 25 25 C 1.53048 * 109.45867 * 154.96542 * 12 11 2 26 26 H 1.08999 * 109.46652 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.47245 * 59.99643 * 1 2 3 28 28 H 1.08994 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47129 * 294.99553 * 4 2 1 30 30 H 1.08994 * 109.47114 * 54.99636 * 4 2 1 31 31 H 1.09000 * 109.46805 * 299.99893 * 5 4 2 32 32 H 1.09006 * 109.47057 * 59.99446 * 5 4 2 33 33 H 1.07998 * 122.54170 * 359.95859 * 7 6 5 34 34 H 1.07997 * 125.20490 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20819 * 0.02562 * 10 6 5 36 36 H 1.00894 * 111.00324 * 151.04225 * 11 2 1 37 37 H 1.08998 * 109.46051 * 34.99757 * 12 11 2 38 38 H 1.09004 * 109.49821 * 298.56656 * 13 12 11 39 39 H 1.08998 * 109.49827 * 58.66389 * 13 12 11 40 40 H 1.09004 * 109.59900 * 294.86652 * 14 13 12 41 41 H 1.09000 * 109.70393 * 174.50781 * 14 13 12 42 42 H 0.96999 * 120.00050 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58894 * 293.81901 * 24 15 14 44 44 H 1.08999 * 109.70381 * 173.46551 * 24 15 14 45 45 H 1.08997 * 109.49884 * 301.33959 * 25 12 11 46 46 H 1.09003 * 109.49005 * 61.43682 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3139 6 6 4.0672 -1.3240 -2.5440 7 6 4.2194 -0.6855 -3.7627 8 6 4.6752 -1.4589 -4.7494 9 16 4.9381 -3.0902 -4.1465 10 6 4.4041 -2.6146 -2.5396 11 7 2.0198 -0.6925 1.1993 12 6 2.0826 0.2225 2.3468 13 6 3.4113 0.9813 2.3217 14 6 3.4584 1.9595 3.4997 15 7 3.2123 1.2152 4.7423 16 6 4.0896 1.2980 5.7906 17 1 5.1339 1.5023 5.6059 18 6 3.6365 1.1193 7.0904 19 7 2.3502 1.2032 7.3565 20 14 4.8525 0.7596 8.4621 21 1 6.2285 0.7174 7.9054 22 1 4.7679 1.8270 9.4911 23 1 4.5278 -0.5508 9.0805 24 6 2.0074 0.3801 4.8387 25 6 1.9763 -0.5803 3.6455 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7517 -1.7714 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 3.8531 0.4371 -1.3575 32 1 3.9995 -1.0727 -0.4261 33 1 3.9866 0.3596 -3.9041 34 1 4.8552 -1.1333 -5.7632 35 1 4.3543 -3.2682 -1.6814 36 1 2.9173 -1.1205 1.0286 37 1 1.2577 0.9328 2.2905 38 1 4.2361 0.2734 2.4032 39 1 3.4968 1.5343 1.3863 40 1 2.6903 2.7224 3.3724 41 1 4.4393 2.4328 3.5454 42 1 2.0336 1.0780 8.2648 43 1 1.1210 1.0140 4.8207 44 1 2.0294 -0.1910 5.7668 45 1 1.0405 -1.1389 3.6524 46 1 2.8149 -1.2733 3.7143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613235959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:00 Heat of formation + Delta-G solvation = 22.715859 kcal Electronic energy + Delta-G solvation = -23304.975680 eV Core-core repulsion = 20127.282615 eV Total energy + Delta-G solvation = -3177.693065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11068 -39.21938 -37.51136 -34.93880 -33.09467 -31.87876 -31.46216 -29.70421 -29.35445 -26.54858 -25.55608 -23.83292 -23.37240 -22.97814 -21.20138 -20.75847 -19.56518 -18.74643 -18.43791 -17.00308 -16.64149 -16.54593 -16.01101 -15.34772 -15.30230 -15.09514 -14.74491 -14.58446 -14.28764 -14.06977 -13.95555 -13.65068 -13.59798 -13.21709 -13.10180 -12.99110 -12.89431 -12.61994 -12.53392 -12.51474 -12.15867 -12.02480 -11.93958 -11.84321 -11.72554 -11.68524 -11.36750 -11.32599 -11.09152 -10.55026 -9.66962 -9.25590 -9.16928 -8.68258 -7.87574 -5.33195 0.14166 0.81452 1.12839 1.45506 1.47305 1.57942 1.81973 2.50953 3.21938 3.32701 3.70465 3.81647 3.99413 4.05592 4.11064 4.23512 4.27807 4.31902 4.42587 4.54005 4.58354 4.65423 4.70484 4.74317 4.83600 4.86693 4.88082 4.90022 4.98041 5.01269 5.08770 5.14685 5.20228 5.27876 5.30676 5.34711 5.36917 5.47998 5.53050 5.58461 5.64536 5.65379 5.75539 6.26528 6.39982 6.63085 7.14992 7.86457 8.38304 9.19031 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.002671 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.636081 B =10479.648523 C =11190.798088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.042 0.958 4 C -0.100 4.100 5 C -0.061 4.061 6 C -0.103 4.103 7 C -0.142 4.142 8 C -0.213 4.213 9 S 0.082 5.918 10 C -0.224 4.224 11 N -0.682 5.682 12 C 0.109 3.891 13 C -0.143 4.143 14 C 0.144 3.856 15 N -0.610 5.610 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.178 3.822 25 C -0.110 4.110 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.169 0.831 36 H 0.342 0.658 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.011 0.989 41 H 0.051 0.949 42 H 0.250 0.750 43 H -0.007 1.007 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -5.950 -25.606 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.060 0.940 4 C -0.138 4.138 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.173 4.173 8 C -0.349 4.349 9 S 0.346 5.654 10 C -0.360 4.360 11 N -0.314 5.314 12 C -0.001 4.001 13 C -0.183 4.183 14 C 0.018 3.982 15 N -0.334 5.334 16 C -0.392 4.392 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.216 1.216 24 C 0.052 3.948 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.011 0.989 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.437 -7.587 -25.992 27.114 hybrid contribution 0.617 1.785 1.700 2.541 sum 2.054 -5.802 -24.292 25.060 Atomic orbital electron populations 1.21775 0.94640 1.01968 1.01134 1.21567 0.95804 0.96043 0.89221 0.93962 1.21625 0.94045 1.01298 0.96861 1.20367 0.95647 1.00140 0.93978 1.19064 1.02075 0.93698 0.96705 1.20333 1.02863 1.02155 0.91901 1.25904 1.08299 0.96112 1.04539 1.84272 1.65791 1.11921 1.03445 1.25688 1.09312 0.99708 1.01252 1.60714 1.33623 1.32862 1.04207 1.21248 0.95874 0.92707 0.90310 1.22508 0.98376 0.99253 0.98184 1.20977 0.98166 0.92777 0.86281 1.44328 1.25210 1.51250 1.12602 1.19542 0.89996 1.43766 0.85931 0.91700 1.25815 0.97475 1.01885 0.99559 1.70197 1.14413 1.54236 1.19337 0.85216 0.79114 0.77036 0.79142 1.19064 1.21873 1.21633 1.20573 0.86803 0.91233 0.96177 1.21926 1.00548 0.97858 0.94662 0.94262 0.91176 0.92463 0.91469 0.90275 0.90588 0.91355 0.82985 0.79934 0.81398 0.83792 0.92065 0.92552 0.90706 0.97134 0.93039 0.94109 0.98908 0.92976 0.92043 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.40 71.98 0.68 -2.20 16 2 C 0.08 1.74 2.46 44.92 0.11 1.85 16 3 H 0.04 0.92 7.11 -2.39 -0.02 0.91 16 4 C -0.10 -1.69 4.79 30.60 0.15 -1.54 16 5 C -0.06 -1.02 5.30 29.85 0.16 -0.86 16 6 C -0.10 -1.77 5.05 -20.92 -0.11 -1.87 16 7 C -0.14 -2.18 9.98 21.22 0.21 -1.97 16 8 C -0.21 -2.98 11.23 66.72 0.75 -2.23 16 9 S 0.08 1.26 23.34 -56.49 -1.32 -0.06 16 10 C -0.22 -3.87 10.98 66.72 0.73 -3.13 16 11 N -0.68 -17.49 6.06 -469.33 -2.84 -20.33 16 12 C 0.11 3.51 2.24 44.94 0.10 3.61 16 13 C -0.14 -4.64 5.31 30.67 0.16 -4.48 16 14 C 0.14 6.02 6.52 86.36 0.56 6.59 16 15 N -0.61 -31.28 2.99 -699.10 -2.09 -33.37 16 16 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 17 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 18 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 19 N -0.94 -56.46 11.19 21.65 0.24 -56.22 16 20 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 C 0.18 8.87 5.30 86.36 0.46 9.33 16 25 C -0.11 -4.30 5.69 30.67 0.17 -4.13 16 26 H 0.04 0.95 7.43 -2.39 -0.02 0.93 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.22 8.13 -2.39 -0.02 1.21 16 32 H 0.07 1.22 6.40 -2.38 -0.02 1.21 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 36 H 0.34 8.24 6.22 -89.70 -0.56 7.69 16 37 H 0.06 2.10 7.11 -2.39 -0.02 2.09 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.07 2.02 7.41 -2.39 -0.02 2.00 16 40 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.05 2.94 6.06 -2.39 -0.01 2.93 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -63.60 370.67 1.77 -61.84 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.39 Total: 18.07 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 5.36 Total: -17.49 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.69 Total: -109.92 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.32 Total: -0.06 kcal Total: -63.60 1.77 -61.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613235959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.551 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds