Wall clock time and date at job start Tue Mar 31 2020 09:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00264 * 2 1 4 4 C 1.50699 * 120.00166 * 179.97438 * 2 1 3 5 5 H 1.09003 * 112.85242 * 23.80234 * 4 2 1 6 6 C 1.53786 * 113.69116 * 252.53870 * 4 2 1 7 7 C 1.53789 * 87.08138 * 220.00674 * 6 4 2 8 8 H 1.08993 * 113.60999 * 270.88235 * 7 6 4 9 9 C 1.53000 * 113.69067 * 139.98782 * 7 6 4 10 10 C 1.50701 * 109.46730 * 85.93728 * 9 7 6 11 11 O 1.20826 * 119.99934 * 359.97438 * 10 9 7 12 12 O 1.34228 * 119.99911 * 180.02562 * 10 9 7 13 13 C 1.45197 * 116.99931 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46783 * 179.97438 * 13 12 10 15 15 C 1.50696 * 115.55360 * 39.88836 * 14 13 12 16 16 H 1.07993 * 120.00464 * 264.97121 * 15 14 13 17 17 C 1.37879 * 120.00194 * 84.97172 * 15 14 13 18 18 N 1.31524 * 119.99558 * 358.50393 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 178.50923 * 17 15 14 20 20 H 1.48488 * 109.46901 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47090 * 119.99934 * 19 17 15 22 22 H 1.48500 * 109.47045 * 239.99876 * 19 17 15 23 23 C 1.53008 * 117.49734 * 254.17714 * 14 13 12 24 24 C 1.52994 * 60.00214 * 252.51286 * 23 14 13 25 25 C 1.53783 * 113.61732 * 155.00093 * 4 2 1 26 26 C 1.53000 * 113.60986 * 25.51727 * 25 4 2 27 27 C 1.53002 * 113.69178 * 254.62598 * 25 4 2 28 28 H 1.08999 * 109.47435 * 269.99656 * 1 2 3 29 29 H 1.09000 * 109.46983 * 30.00607 * 1 2 3 30 30 H 1.08999 * 109.46897 * 150.00025 * 1 2 3 31 31 H 1.08996 * 113.61346 * 105.45855 * 6 4 2 32 32 H 1.08998 * 113.61153 * 334.55405 * 6 4 2 33 33 H 1.08995 * 109.46852 * 205.93747 * 9 7 6 34 34 H 1.09001 * 109.47196 * 325.94069 * 9 7 6 35 35 H 1.08993 * 109.47160 * 299.99455 * 13 12 10 36 36 H 1.09000 * 109.47386 * 59.99952 * 13 12 10 37 37 H 0.97000 * 119.99758 * 179.97438 * 18 17 15 38 38 H 1.09000 * 117.49613 * 0.02562 * 23 14 13 39 39 H 1.09001 * 117.49453 * 145.01932 * 23 14 13 40 40 H 1.09003 * 117.50012 * 252.51263 * 24 23 14 41 41 H 1.09000 * 117.52069 * 107.48193 * 24 23 14 42 42 H 1.09001 * 109.46989 * 157.50007 * 26 25 4 43 43 H 1.09001 * 109.47210 * 277.49240 * 26 25 4 44 44 H 1.08991 * 109.47735 * 37.49785 * 26 25 4 45 45 H 1.08996 * 109.46607 * 322.46121 * 27 25 4 46 46 H 1.09002 * 109.47128 * 82.46051 * 27 25 4 47 47 H 1.08994 * 109.47058 * 202.46444 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6763 -2.1314 -0.4044 6 6 2.9354 -1.6283 1.3441 7 6 4.1326 -2.1451 0.5287 8 1 4.0601 -3.2009 0.2681 9 6 5.4906 -1.7726 1.1270 10 6 5.8864 -2.8021 2.1539 11 8 5.1569 -3.7374 2.3839 12 8 7.0488 -2.6794 2.8138 13 6 7.3655 -3.7083 3.7881 14 6 8.7188 -3.4012 4.4325 15 6 8.9781 -1.9487 4.7391 16 1 9.5217 -1.3367 4.0346 17 6 8.5214 -1.4010 5.9192 18 7 7.8341 -2.1385 6.7638 19 14 8.8788 0.3885 6.3182 20 1 9.6641 0.9947 5.2133 21 1 7.5993 1.1250 6.4788 22 1 9.6575 0.4683 7.5801 23 6 9.9134 -4.2587 4.0097 24 6 9.2942 -4.4404 5.3968 25 6 3.6745 -1.2003 -0.5949 26 6 4.2771 0.2027 -0.4997 27 6 3.7987 -1.8066 -1.9942 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 2.4259 -2.4063 1.9126 32 1 3.1627 -0.7457 1.9420 33 1 6.2398 -1.7416 0.3361 34 1 5.4224 -0.7937 1.6016 35 1 6.5933 -3.7305 4.5570 36 1 7.4116 -4.6774 3.2914 37 1 7.5131 -1.7533 7.5941 38 1 9.7352 -5.0412 3.2722 39 1 10.8871 -3.7721 3.9530 40 1 9.8605 -4.0735 6.2529 41 1 8.7084 -5.3427 5.5726 42 1 5.3637 0.1359 -0.5538 43 1 3.9092 0.8130 -1.3246 44 1 3.9879 0.6590 0.4469 45 1 3.1865 -2.7063 -2.0559 46 1 3.4576 -1.0835 -2.7351 47 1 4.8404 -2.0619 -2.1883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783100603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:05 Heat of formation + Delta-G solvation = -88.118038 kcal Electronic energy + Delta-G solvation = -26102.965459 eV Core-core repulsion = 22445.420653 eV Total energy + Delta-G solvation = -3657.544805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.182 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26818 -39.58076 -38.07774 -36.69224 -35.14313 -31.92232 -31.50518 -31.25956 -29.73394 -27.45763 -26.90327 -25.34825 -24.59598 -22.64254 -21.17868 -20.61299 -19.39217 -19.20520 -18.33153 -16.93656 -16.47913 -16.21553 -15.81522 -15.46432 -15.25597 -15.05905 -14.68301 -14.42643 -13.93737 -13.69832 -13.46017 -13.19823 -12.88709 -12.83779 -12.57561 -12.42100 -12.23903 -11.95864 -11.91207 -11.79609 -11.58766 -11.52592 -11.01772 -10.98291 -10.96330 -10.84017 -10.52689 -10.47537 -10.30655 -10.09681 -9.89831 -9.75141 -9.46878 -9.17997 -8.89890 -8.44189 -8.12294 -6.03133 -4.07771 1.76227 2.86697 3.29578 3.37948 3.41536 3.43800 3.88911 4.20298 4.39049 4.42401 4.60033 4.66070 4.88166 5.09302 5.10951 5.16404 5.20406 5.25862 5.27713 5.33584 5.39801 5.49534 5.58756 5.68449 5.68915 5.72445 5.82102 5.87838 5.89341 5.97167 6.00705 6.02138 6.21378 6.24610 6.30798 6.34971 6.50052 6.51969 6.68605 6.78490 7.02907 7.21079 7.39338 7.39969 7.53089 7.89652 8.36882 8.56912 8.92990 9.57469 11.06535 Molecular weight = 308.18amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.003495 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.217579 B = 8010.029366 C = 8844.284114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.364 3.636 3 O -0.450 6.450 4 C -0.163 4.163 5 H 0.112 0.888 6 C -0.112 4.112 7 C -0.085 4.085 8 H 0.104 0.896 9 C -0.105 4.105 10 C 0.452 3.548 11 O -0.529 6.529 12 O -0.326 6.326 13 C 0.118 3.882 14 C 0.035 3.965 15 C -0.480 4.480 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.210 4.210 24 C -0.145 4.145 25 C -0.063 4.063 26 C -0.126 4.126 27 C -0.138 4.138 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.259 0.741 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 0.813 -15.070 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.240 3.760 3 O -0.323 6.323 4 C -0.182 4.182 5 H 0.130 0.870 6 C -0.149 4.149 7 C -0.103 4.103 8 H 0.122 0.878 9 C -0.143 4.143 10 C 0.296 3.704 11 O -0.420 6.420 12 O -0.240 6.240 13 C 0.044 3.956 14 C 0.035 3.965 15 C -0.517 4.517 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.247 4.247 24 C -0.183 4.183 25 C -0.063 4.063 26 C -0.183 4.183 27 C -0.195 4.195 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.283 1.100 -14.784 19.253 hybrid contribution -0.128 0.589 0.476 0.769 sum -12.412 1.689 -14.308 19.016 Atomic orbital electron populations 1.22336 0.94979 1.04400 1.04554 1.24426 0.91560 0.90070 0.69950 1.90425 1.71235 1.35228 1.35409 1.23332 0.96624 0.97620 1.00592 0.87013 1.22881 0.96300 1.01665 0.94088 1.22468 0.92407 1.00141 0.95303 0.87769 1.21347 0.97967 0.98233 0.96739 1.23612 0.80001 0.85661 0.81148 1.90576 1.52785 1.33554 1.65085 1.86589 1.36334 1.51238 1.49887 1.22687 0.99280 0.85649 0.87950 1.18793 0.87056 0.93568 0.97111 1.20343 1.35746 0.92386 1.03258 0.91903 1.24985 0.94671 0.97657 0.96114 1.70012 1.36170 1.35760 1.10171 0.86544 0.78084 0.85189 0.78286 1.19568 1.21030 1.21053 1.23114 0.99633 1.03702 0.98260 1.22517 1.03519 0.99550 0.92678 1.21856 0.93154 0.96791 0.94525 1.21808 0.99449 0.93327 1.03690 1.21774 1.02275 1.00258 0.95176 0.88715 0.89990 0.89896 0.90097 0.89529 0.87882 0.87657 0.91399 0.94357 0.93114 0.91622 0.90085 0.89375 0.91758 0.92808 0.92438 0.90611 0.92441 0.92663 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.35 10.25 36.00 0.37 -0.98 16 2 C 0.36 3.54 6.65 -29.04 -0.19 3.34 16 3 O -0.45 -5.78 13.27 6.00 0.08 -5.70 16 4 C -0.16 -1.51 3.57 -90.96 -0.32 -1.83 16 5 H 0.11 0.81 7.96 -51.93 -0.41 0.40 16 6 C -0.11 -1.29 6.84 -25.91 -0.18 -1.47 16 7 C -0.08 -1.02 2.62 -89.80 -0.24 -1.25 16 8 H 0.10 1.30 7.69 -51.93 -0.40 0.90 16 9 C -0.11 -1.48 4.40 -27.88 -0.12 -1.61 16 10 C 0.45 8.65 7.96 36.01 0.29 8.94 16 11 O -0.53 -10.99 15.54 -18.75 -0.29 -11.28 16 12 O -0.33 -7.35 9.61 -39.25 -0.38 -7.73 16 13 C 0.12 2.80 5.53 37.16 0.21 3.00 16 14 C 0.04 0.88 1.81 -155.65 -0.28 0.59 16 15 C -0.48 -13.09 8.24 -34.44 -0.28 -13.37 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.07 1.87 5.41 -17.81 -0.10 1.78 16 18 N -0.88 -25.07 12.80 55.43 0.71 -24.36 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.21 -4.57 9.88 -26.73 -0.26 -4.83 16 24 C -0.15 -3.39 9.33 -26.73 -0.25 -3.64 16 25 C -0.06 -0.64 1.23 -153.69 -0.19 -0.83 16 26 C -0.13 -1.42 6.22 37.16 0.23 -1.19 16 27 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.08 7.39 -51.93 -0.38 0.70 16 33 H 0.10 1.27 7.93 -51.93 -0.41 0.86 16 34 H 0.11 1.47 7.28 -51.93 -0.38 1.09 16 35 H 0.07 1.75 8.13 -51.93 -0.42 1.33 16 36 H 0.04 0.84 7.94 -51.93 -0.41 0.43 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.05 0.58 7.27 -51.93 -0.38 0.20 16 43 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 44 H 0.08 0.97 5.61 -51.93 -0.29 0.68 16 45 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -31.11 381.34 -8.20 -39.31 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.06 Total: 1.97 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.98 Total: -14.19 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.71 Total: -24.36 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.59 Total: -24.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.11 -8.20 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783100603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.811 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds