Wall clock time and date at job start Tue Mar 31 2020 09:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00264 * 2 1 4 4 C 1.50699 * 120.00166 * 179.97438 * 2 1 3 5 5 H 1.09003 * 112.85242 * 23.80234 * 4 2 1 6 6 C 1.53786 * 113.69116 * 252.53870 * 4 2 1 7 7 C 1.53789 * 87.08138 * 220.00674 * 6 4 2 8 8 H 1.08993 * 113.60999 * 270.88235 * 7 6 4 9 9 C 1.53000 * 113.69067 * 139.98782 * 7 6 4 10 10 C 1.50701 * 109.46730 * 85.93728 * 9 7 6 11 11 O 1.20826 * 119.99934 * 359.97438 * 10 9 7 12 12 O 1.34228 * 119.99911 * 180.02562 * 10 9 7 13 13 C 1.45197 * 116.99931 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46783 * 179.97438 * 13 12 10 15 15 C 1.50696 * 115.55360 * 39.88836 * 14 13 12 16 16 H 1.07993 * 120.00464 * 264.97121 * 15 14 13 17 17 C 1.37879 * 120.00194 * 84.97172 * 15 14 13 18 18 N 1.31524 * 119.99558 * 358.50393 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 178.50923 * 17 15 14 20 20 H 1.48488 * 109.46901 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47090 * 119.99934 * 19 17 15 22 22 H 1.48500 * 109.47045 * 239.99876 * 19 17 15 23 23 C 1.53008 * 117.49734 * 254.17714 * 14 13 12 24 24 C 1.52994 * 60.00214 * 252.51286 * 23 14 13 25 25 C 1.53783 * 113.61732 * 155.00093 * 4 2 1 26 26 C 1.53000 * 113.60986 * 25.51727 * 25 4 2 27 27 C 1.53002 * 113.69178 * 254.62598 * 25 4 2 28 28 H 1.08999 * 109.47435 * 269.99656 * 1 2 3 29 29 H 1.09000 * 109.46983 * 30.00607 * 1 2 3 30 30 H 1.08999 * 109.46897 * 150.00025 * 1 2 3 31 31 H 1.08996 * 113.61346 * 105.45855 * 6 4 2 32 32 H 1.08998 * 113.61153 * 334.55405 * 6 4 2 33 33 H 1.08995 * 109.46852 * 205.93747 * 9 7 6 34 34 H 1.09001 * 109.47196 * 325.94069 * 9 7 6 35 35 H 1.08993 * 109.47160 * 299.99455 * 13 12 10 36 36 H 1.09000 * 109.47386 * 59.99952 * 13 12 10 37 37 H 0.97000 * 119.99758 * 179.97438 * 18 17 15 38 38 H 1.09000 * 117.49613 * 0.02562 * 23 14 13 39 39 H 1.09001 * 117.49453 * 145.01932 * 23 14 13 40 40 H 1.09003 * 117.50012 * 252.51263 * 24 23 14 41 41 H 1.09000 * 117.52069 * 107.48193 * 24 23 14 42 42 H 1.09001 * 109.46989 * 157.50007 * 26 25 4 43 43 H 1.09001 * 109.47210 * 277.49240 * 26 25 4 44 44 H 1.08991 * 109.47735 * 37.49785 * 26 25 4 45 45 H 1.08996 * 109.46607 * 322.46121 * 27 25 4 46 46 H 1.09002 * 109.47128 * 82.46051 * 27 25 4 47 47 H 1.08994 * 109.47058 * 202.46444 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6763 -2.1314 -0.4044 6 6 2.9354 -1.6283 1.3441 7 6 4.1326 -2.1451 0.5287 8 1 4.0601 -3.2009 0.2681 9 6 5.4906 -1.7726 1.1270 10 6 5.8864 -2.8021 2.1539 11 8 5.1569 -3.7374 2.3839 12 8 7.0488 -2.6794 2.8138 13 6 7.3655 -3.7083 3.7881 14 6 8.7188 -3.4012 4.4325 15 6 8.9781 -1.9487 4.7391 16 1 9.5217 -1.3367 4.0346 17 6 8.5214 -1.4010 5.9192 18 7 7.8341 -2.1385 6.7638 19 14 8.8788 0.3885 6.3182 20 1 9.6641 0.9947 5.2133 21 1 7.5993 1.1250 6.4788 22 1 9.6575 0.4683 7.5801 23 6 9.9134 -4.2587 4.0097 24 6 9.2942 -4.4404 5.3968 25 6 3.6745 -1.2003 -0.5949 26 6 4.2771 0.2027 -0.4997 27 6 3.7987 -1.8066 -1.9942 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 2.4259 -2.4063 1.9126 32 1 3.1627 -0.7457 1.9420 33 1 6.2398 -1.7416 0.3361 34 1 5.4224 -0.7937 1.6016 35 1 6.5933 -3.7305 4.5570 36 1 7.4116 -4.6774 3.2914 37 1 7.5131 -1.7533 7.5941 38 1 9.7352 -5.0412 3.2722 39 1 10.8871 -3.7721 3.9530 40 1 9.8605 -4.0735 6.2529 41 1 8.7084 -5.3427 5.5726 42 1 5.3637 0.1359 -0.5538 43 1 3.9092 0.8130 -1.3246 44 1 3.9879 0.6590 0.4469 45 1 3.1865 -2.7063 -2.0559 46 1 3.4576 -1.0835 -2.7351 47 1 4.8404 -2.0619 -2.1883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783100603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:04 Heat of formation + Delta-G solvation = -102.783934 kcal Electronic energy + Delta-G solvation = -26103.601420 eV Core-core repulsion = 22445.420653 eV Total energy + Delta-G solvation = -3658.180766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.182 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19437 -41.09663 -39.05967 -38.43793 -36.86711 -34.00149 -32.45022 -32.13835 -30.53571 -28.63461 -28.26275 -27.32228 -25.67190 -23.56979 -22.97384 -21.92943 -21.20547 -20.29294 -19.29339 -18.51591 -18.16431 -17.41789 -17.17674 -16.91663 -16.53851 -16.11706 -16.02107 -15.74415 -15.29072 -14.96708 -14.51060 -14.36224 -14.22022 -13.88597 -13.66123 -13.53534 -13.31981 -13.17788 -13.13253 -12.96561 -12.88852 -12.84231 -12.63527 -12.37845 -12.34797 -12.11083 -11.96840 -11.85558 -11.63311 -11.57037 -11.41880 -11.23683 -10.91567 -10.85913 -10.47108 -10.01683 -9.97781 -8.11991 -6.21940 1.00625 1.32225 1.39303 1.42294 1.53107 1.93172 2.42907 3.16349 3.17879 3.33215 3.41016 3.49366 3.71365 3.81126 3.91062 4.17661 4.28017 4.29504 4.31586 4.38810 4.43035 4.51437 4.53166 4.57025 4.64761 4.65292 4.69483 4.78880 4.84944 4.89478 4.94380 4.95329 4.97353 5.04536 5.16282 5.16960 5.19777 5.26421 5.33074 5.39832 5.47256 5.59586 5.63304 5.75760 5.81489 6.36556 6.66787 6.81350 6.93575 7.45991 8.97254 Molecular weight = 308.18amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.003495 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.217579 B = 8010.029366 C = 8844.284114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.363 3.637 3 O -0.487 6.487 4 C -0.152 4.152 5 H 0.141 0.859 6 C -0.119 4.119 7 C -0.085 4.085 8 H 0.105 0.895 9 C -0.098 4.098 10 C 0.448 3.552 11 O -0.547 6.547 12 O -0.345 6.345 13 C 0.129 3.871 14 C 0.000 4.000 15 C -0.491 4.491 16 H 0.054 0.946 17 C 0.023 3.977 18 N -0.912 5.912 19 Si 0.948 3.052 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.279 1.279 23 C -0.181 4.181 24 C -0.147 4.147 25 C -0.057 4.057 26 C -0.123 4.123 27 C -0.135 4.135 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.259 0.741 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 0.619 -16.991 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.241 3.759 3 O -0.363 6.363 4 C -0.171 4.171 5 H 0.159 0.841 6 C -0.157 4.157 7 C -0.104 4.104 8 H 0.123 0.877 9 C -0.135 4.135 10 C 0.293 3.707 11 O -0.438 6.438 12 O -0.260 6.260 13 C 0.055 3.945 14 C 0.000 4.000 15 C -0.529 4.529 16 H 0.072 0.928 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.205 1.205 23 C -0.218 4.218 24 C -0.185 4.185 25 C -0.057 4.057 26 C -0.179 4.179 27 C -0.192 4.192 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.986 0.898 -16.721 21.191 hybrid contribution 0.076 0.627 1.066 1.239 sum -12.911 1.525 -15.656 20.350 Atomic orbital electron populations 1.22346 0.92251 1.05810 1.05428 1.24888 0.93117 0.89458 0.68436 1.90426 1.72278 1.36388 1.37198 1.23375 0.96511 0.98533 0.98653 0.84112 1.22853 0.96831 1.00909 0.95097 1.22510 0.91073 1.00567 0.96220 0.87734 1.21507 0.99845 0.96378 0.95771 1.24569 0.78718 0.86301 0.81101 1.90556 1.52913 1.34681 1.65699 1.86594 1.38173 1.51219 1.50010 1.22386 0.97687 0.86779 0.87670 1.18930 0.88827 0.93060 0.99198 1.20571 1.35374 0.93825 1.03109 0.92781 1.25660 0.94631 1.01237 0.96125 1.70115 1.37198 1.37255 1.10486 0.85647 0.77823 0.80857 0.78238 1.18894 1.21101 1.20516 1.23129 0.98375 1.02853 0.97462 1.22435 1.03734 0.99501 0.92825 1.21792 0.93420 0.95480 0.95034 1.21740 0.99641 0.94032 1.02534 1.21769 1.02767 1.00873 0.93829 0.87915 0.89854 0.87274 0.90395 0.91204 0.85718 0.87694 0.94622 0.92778 0.93230 0.88828 0.89676 0.91368 0.90533 0.92562 0.92643 0.92566 0.91018 0.92012 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 10.25 71.23 0.73 -1.42 16 2 C 0.36 6.51 6.65 29.10 0.19 6.70 16 3 O -0.49 -12.35 13.27 -1.45 -0.02 -12.37 16 4 C -0.15 -2.51 3.57 -11.01 -0.04 -2.55 16 5 H 0.14 1.53 7.96 -2.39 -0.02 1.51 16 6 C -0.12 -2.68 6.84 31.12 0.21 -2.47 16 7 C -0.09 -1.94 2.62 -10.26 -0.03 -1.97 16 8 H 0.10 2.42 7.69 -2.39 -0.02 2.40 16 9 C -0.10 -2.70 4.40 29.85 0.13 -2.56 16 10 C 0.45 17.14 7.96 71.24 0.57 17.70 16 11 O -0.55 -22.75 15.54 21.96 0.34 -22.41 16 12 O -0.34 -15.66 9.61 -51.40 -0.49 -16.15 16 13 C 0.13 6.16 5.53 71.98 0.40 6.56 16 14 C 0.00 0.01 1.81 -52.92 -0.10 -0.08 16 15 C -0.49 -27.02 8.24 25.60 0.21 -26.81 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 17 C 0.02 1.28 5.41 84.65 0.46 1.74 16 18 N -0.91 -52.71 12.80 21.45 0.27 -52.44 16 19 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.18 -7.61 9.88 30.59 0.30 -7.31 16 24 C -0.15 -6.86 9.33 30.59 0.29 -6.57 16 25 C -0.06 -1.06 1.23 -51.65 -0.06 -1.12 16 26 C -0.12 -2.68 6.22 71.98 0.45 -2.24 16 27 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.60 8.11 -2.39 -0.02 0.58 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.79 7.39 -2.39 -0.02 1.77 16 33 H 0.12 2.89 7.93 -2.39 -0.02 2.87 16 34 H 0.10 2.94 7.28 -2.39 -0.02 2.92 16 35 H 0.04 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.05 2.36 7.94 -2.39 -0.02 2.34 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.06 1.16 7.27 -2.39 -0.02 1.14 16 43 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 44 H 0.06 1.46 5.61 -2.39 -0.01 1.44 16 45 H 0.07 0.84 7.95 -2.39 -0.02 0.82 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.82 381.34 7.44 -60.39 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.94 Total: 20.68 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.37 Total: -23.69 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.27 Total: -52.44 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.17 Total: -50.93 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.82 7.44 -60.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783100603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.399 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds