Wall clock time and date at job start Tue Mar 31 2020 09:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99732 * 4 2 1 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 2 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47346 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47235 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99790 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99622 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47485 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46928 * 119.99930 * 15 13 11 18 18 H 1.48497 * 109.46969 * 239.99547 * 15 13 11 19 19 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 20 20 N 1.31071 * 126.66448 * 75.02676 * 19 2 1 21 21 N 1.28830 * 107.99651 * 179.97438 * 20 19 2 22 22 N 1.28742 * 109.39748 * 359.97438 * 21 20 19 23 23 N 1.29012 * 108.80436 * 359.74700 * 22 21 20 24 24 C 1.46509 * 126.43342 * 180.24735 * 23 22 21 25 25 C 1.52992 * 117.50044 * 8.92540 * 24 23 22 26 26 C 1.53001 * 117.49883 * 300.26193 * 24 23 22 27 27 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 28 28 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 29 29 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99984 * 264.99579 * 4 2 1 31 31 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 33 33 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 34 34 H 1.08996 * 109.47407 * 300.00667 * 9 8 7 35 35 H 1.09000 * 109.46986 * 60.00438 * 9 8 7 36 36 H 1.09004 * 109.47108 * 300.00289 * 10 9 8 37 37 H 1.09000 * 109.46870 * 60.00183 * 10 9 8 38 38 H 0.97002 * 119.99804 * 179.97438 * 14 13 11 39 39 H 1.09004 * 115.54676 * 154.59685 * 24 23 22 40 40 H 1.09004 * 117.49923 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.50127 * 145.02008 * 25 24 23 42 42 H 1.08993 * 117.49663 * 214.98138 * 26 24 23 43 43 H 1.09005 * 117.49702 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8530 1.1604 -2.4129 7 7 2.5966 -0.6533 -3.4575 8 6 2.7359 0.0776 -4.7196 9 6 3.2604 -0.8686 -5.8016 10 6 3.4066 -0.1053 -7.1195 11 6 3.9226 -1.0374 -8.1853 12 1 4.1264 -2.0707 -7.9465 13 6 4.1355 -0.5706 -9.4651 14 7 3.8878 0.6879 -9.7558 15 14 4.7744 -1.7262 -10.7864 16 1 4.9712 -3.0795 -10.2076 17 1 3.7912 -1.8003 -11.8968 18 1 6.0694 -1.2172 -11.3051 19 6 2.0323 -0.7104 1.2304 20 7 2.0371 -2.0042 1.4399 21 7 2.5449 -2.2169 2.6047 22 7 2.8648 -1.0923 3.1435 23 7 2.5695 -0.1400 2.3248 24 6 2.7762 1.2935 2.5464 25 6 3.5886 1.7085 3.7746 26 6 2.0743 1.9311 3.7471 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1527 31 1 2.8273 -1.5944 -3.4140 32 1 1.7651 0.4709 -5.0208 33 1 3.4365 0.9020 -4.5866 34 1 4.2312 -1.2623 -5.5005 35 1 2.5595 -1.6927 -5.9344 36 1 2.4359 0.2887 -7.4207 37 1 4.1077 0.7186 -6.9863 38 1 4.0380 1.0163 -10.6560 39 1 2.8814 1.8980 1.6455 40 1 3.9690 0.9151 4.4180 41 1 4.2280 2.5863 3.6819 42 1 1.7183 2.9552 3.6364 43 1 1.4585 1.2842 4.3720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790293849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:20 Heat of formation + Delta-G solvation = 103.521042 kcal Electronic energy + Delta-G solvation = -24449.532795 eV Core-core repulsion = 20761.343243 eV Total energy + Delta-G solvation = -3688.189552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.63533 -40.08553 -38.48440 -36.63426 -35.22261 -34.14717 -33.41952 -32.62057 -31.28094 -30.07788 -26.68182 -25.82794 -25.16857 -23.48653 -23.18389 -22.39595 -21.48397 -20.85687 -20.38187 -18.77616 -18.00689 -17.42396 -16.95069 -16.25794 -15.84815 -15.58899 -15.34339 -14.73189 -14.44159 -14.23396 -14.06738 -13.85648 -13.77237 -13.24634 -12.82852 -12.63793 -12.45298 -12.36654 -12.30209 -12.06071 -11.82537 -11.74887 -11.50810 -11.38118 -10.93174 -10.89079 -10.75288 -10.58040 -10.45035 -10.23755 -9.88261 -9.49706 -9.47110 -9.12463 -8.73565 -8.38414 -6.03027 -4.05865 0.69204 1.31788 1.79191 2.59920 2.79110 3.13398 3.29511 3.33567 3.37186 3.40870 3.56844 3.85094 3.98151 4.05091 4.25753 4.44145 4.57974 4.67251 4.83617 4.87583 4.92822 5.13965 5.22583 5.28125 5.30334 5.33003 5.42386 5.65149 5.69419 5.77771 5.82797 6.11870 6.17661 6.45555 6.59527 6.71846 6.95774 6.99746 7.62709 7.74859 7.95954 7.99644 8.18225 8.36890 8.58057 9.01063 9.58453 11.08280 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.002084 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.696033 B =13434.061534 C =13698.251320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.254 3.746 3 H 0.111 0.889 4 N -0.743 5.743 5 C 0.706 3.294 6 O -0.591 6.591 7 N -0.737 5.737 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.181 3.819 20 N -0.292 5.292 21 N -0.072 5.072 22 N -0.093 5.093 23 N -0.271 5.271 24 C 0.040 3.960 25 C -0.152 4.152 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.405 0.595 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.165 0.835 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 2.612 28.353 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.144 3.856 3 H 0.129 0.871 4 N -0.401 5.401 5 C 0.406 3.594 6 O -0.470 6.470 7 N -0.391 5.391 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.098 4.098 20 N -0.142 5.142 21 N -0.065 5.065 22 N -0.078 5.078 23 N -0.071 5.071 24 C -0.063 4.063 25 C -0.190 4.190 26 C -0.199 4.199 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.240 0.760 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.182 0.818 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.674 2.641 28.885 29.379 hybrid contribution 0.516 -0.669 -1.161 1.436 sum -4.158 1.972 27.723 28.103 Atomic orbital electron populations 1.22224 0.92143 1.03868 1.03701 1.18916 0.95002 0.94949 0.76685 0.87118 1.45039 1.72837 1.14210 1.08044 1.15882 0.78441 0.85014 0.80077 1.90920 1.57179 1.14325 1.84541 1.45392 1.69959 1.14089 1.09612 1.21557 1.01405 0.95227 0.80605 1.21903 0.99753 0.98244 0.96039 1.19032 0.97522 0.95481 0.89346 1.21243 1.43805 0.96414 0.94501 0.92578 1.25035 0.95651 0.95117 0.98724 1.69976 1.48844 1.14151 1.20315 0.86525 0.78543 0.81063 0.81798 1.19754 1.20995 1.21019 1.26135 0.99694 0.90457 0.93488 1.74983 1.17705 1.11172 1.10330 1.78661 1.11422 1.15112 1.01317 1.78849 1.18844 0.92088 1.18042 1.47850 1.38679 1.08891 1.11693 1.22528 1.11059 0.74871 0.97811 1.23482 0.94719 1.04282 0.96496 1.23577 0.96097 1.02924 0.97271 0.91432 0.89621 0.91048 0.75966 0.77013 0.91741 0.91855 0.92731 0.92640 0.96208 0.96256 0.92987 0.81827 0.86464 0.86055 0.85913 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.47 37.16 0.35 -0.95 16 2 C 0.25 2.30 2.96 -69.09 -0.20 2.10 16 3 H 0.11 0.95 6.42 -51.92 -0.33 0.61 16 4 N -0.74 -7.82 5.07 -59.82 -0.30 -8.12 16 5 C 0.71 9.82 8.53 -86.92 -0.74 9.07 16 6 O -0.59 -10.15 16.01 5.29 0.08 -10.07 16 7 N -0.74 -10.13 5.56 -65.22 -0.36 -10.49 16 8 C 0.13 2.29 5.67 -4.04 -0.02 2.27 16 9 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 10 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 11 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.18 1.77 6.91 -155.44 -1.07 0.69 16 20 N -0.29 -3.51 12.09 32.70 0.40 -3.12 16 21 N -0.07 -0.93 13.43 60.35 0.81 -0.12 16 22 N -0.09 -1.03 12.69 60.35 0.77 -0.27 16 23 N -0.27 -2.38 3.67 -51.81 -0.19 -2.57 16 24 C 0.04 0.20 6.58 -67.93 -0.45 -0.24 16 25 C -0.15 -0.54 10.16 -26.70 -0.27 -0.82 16 26 C -0.16 -0.51 10.46 -26.69 -0.28 -0.78 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.41 3.83 8.39 -40.82 -0.34 3.49 16 31 H 0.40 4.46 8.49 -40.82 -0.35 4.12 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.16 0.55 7.23 -51.93 -0.38 0.17 16 40 H 0.12 0.56 7.85 -51.93 -0.41 0.16 16 41 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -34.47 370.35 -7.30 -41.77 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.42 Total: 0.81 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.38 Total: -3.91 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 1.85 Total: -50.56 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.47 -7.30 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790293849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.289 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds