Wall clock time and date at job start Tue Mar 31 2020 09:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99732 * 4 2 1 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 2 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47346 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47235 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99790 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99622 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47485 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46928 * 119.99930 * 15 13 11 18 18 H 1.48497 * 109.46969 * 239.99547 * 15 13 11 19 19 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 20 20 N 1.31071 * 126.66448 * 75.02676 * 19 2 1 21 21 N 1.28830 * 107.99651 * 179.97438 * 20 19 2 22 22 N 1.28742 * 109.39748 * 359.97438 * 21 20 19 23 23 N 1.29012 * 108.80436 * 359.74700 * 22 21 20 24 24 C 1.46509 * 126.43342 * 180.24735 * 23 22 21 25 25 C 1.52992 * 117.50044 * 8.92540 * 24 23 22 26 26 C 1.53001 * 117.49883 * 300.26193 * 24 23 22 27 27 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 28 28 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 29 29 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99984 * 264.99579 * 4 2 1 31 31 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 33 33 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 34 34 H 1.08996 * 109.47407 * 300.00667 * 9 8 7 35 35 H 1.09000 * 109.46986 * 60.00438 * 9 8 7 36 36 H 1.09004 * 109.47108 * 300.00289 * 10 9 8 37 37 H 1.09000 * 109.46870 * 60.00183 * 10 9 8 38 38 H 0.97002 * 119.99804 * 179.97438 * 14 13 11 39 39 H 1.09004 * 115.54676 * 154.59685 * 24 23 22 40 40 H 1.09004 * 117.49923 * 359.97438 * 25 24 23 41 41 H 1.09002 * 117.50127 * 145.02008 * 25 24 23 42 42 H 1.08993 * 117.49663 * 214.98138 * 26 24 23 43 43 H 1.09005 * 117.49702 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8530 1.1604 -2.4129 7 7 2.5966 -0.6533 -3.4575 8 6 2.7359 0.0776 -4.7196 9 6 3.2604 -0.8686 -5.8016 10 6 3.4066 -0.1053 -7.1195 11 6 3.9226 -1.0374 -8.1853 12 1 4.1264 -2.0707 -7.9465 13 6 4.1355 -0.5706 -9.4651 14 7 3.8878 0.6879 -9.7558 15 14 4.7744 -1.7262 -10.7864 16 1 4.9712 -3.0795 -10.2076 17 1 3.7912 -1.8003 -11.8968 18 1 6.0694 -1.2172 -11.3051 19 6 2.0323 -0.7104 1.2304 20 7 2.0371 -2.0042 1.4399 21 7 2.5449 -2.2169 2.6047 22 7 2.8648 -1.0923 3.1435 23 7 2.5695 -0.1400 2.3248 24 6 2.7762 1.2935 2.5464 25 6 3.5886 1.7085 3.7746 26 6 2.0743 1.9311 3.7471 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1527 31 1 2.8273 -1.5944 -3.4140 32 1 1.7651 0.4709 -5.0208 33 1 3.4365 0.9020 -4.5866 34 1 4.2312 -1.2623 -5.5005 35 1 2.5595 -1.6927 -5.9344 36 1 2.4359 0.2887 -7.4207 37 1 4.1077 0.7186 -6.9863 38 1 4.0380 1.0163 -10.6560 39 1 2.8814 1.8980 1.6455 40 1 3.9690 0.9151 4.4180 41 1 4.2280 2.5863 3.6819 42 1 1.7183 2.9552 3.6364 43 1 1.4585 1.2842 4.3720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790293849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:19 Heat of formation + Delta-G solvation = 78.860528 kcal Electronic energy + Delta-G solvation = -24450.602155 eV Core-core repulsion = 20761.343243 eV Total energy + Delta-G solvation = -3689.258912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.42374 -41.18536 -38.91069 -37.66959 -36.59976 -35.18815 -34.80651 -33.73796 -32.77551 -31.05535 -28.40785 -26.51901 -26.00171 -24.97293 -23.65674 -23.20687 -22.27653 -22.20442 -21.65923 -19.69348 -18.77857 -18.53407 -18.16130 -17.72292 -16.82362 -16.55407 -16.22988 -16.19704 -15.77589 -15.49706 -15.02808 -14.67091 -14.46899 -14.25325 -14.12066 -13.71566 -13.54848 -13.43408 -13.28679 -13.14822 -12.80732 -12.75062 -12.59176 -12.52983 -12.32261 -12.23987 -11.74596 -11.67693 -11.64877 -11.59141 -11.30910 -11.14067 -11.01396 -10.54306 -10.52143 -9.90220 -8.18408 -6.29066 -0.05215 0.69912 0.93653 1.42254 1.42738 1.55464 1.62099 2.06140 2.42764 2.46039 2.56631 3.04569 3.15539 3.20878 3.41693 3.58542 3.69360 3.93083 4.02100 4.14157 4.19311 4.27643 4.35504 4.55889 4.60309 4.62779 4.66742 4.73910 4.90108 4.99815 5.00890 5.05110 5.08914 5.16564 5.19752 5.27065 5.47324 5.55871 5.74530 5.86393 5.88146 6.25037 6.88290 6.97993 7.35754 7.40241 7.48388 8.93763 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.002084 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.696033 B =13434.061534 C =13698.251320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.256 3.744 3 H 0.121 0.879 4 N -0.730 5.730 5 C 0.709 3.291 6 O -0.624 6.624 7 N -0.730 5.730 8 C 0.151 3.849 9 C -0.103 4.103 10 C 0.024 3.976 11 C -0.539 4.539 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.183 3.817 20 N -0.310 5.310 21 N -0.104 5.104 22 N -0.099 5.099 23 N -0.259 5.259 24 C 0.012 3.988 25 C -0.148 4.148 26 C -0.144 4.144 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.412 0.588 31 H 0.411 0.589 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.066 0.934 36 H -0.005 1.005 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.183 0.817 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 2.308 29.216 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.147 3.853 3 H 0.138 0.862 4 N -0.388 5.388 5 C 0.409 3.591 6 O -0.504 6.504 7 N -0.385 5.385 8 C 0.027 3.973 9 C -0.141 4.141 10 C -0.014 4.014 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.096 4.096 20 N -0.160 5.160 21 N -0.097 5.097 22 N -0.084 5.084 23 N -0.060 5.060 24 C -0.089 4.089 25 C -0.186 4.186 26 C -0.182 4.182 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.249 0.751 31 H 0.247 0.753 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.200 0.800 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.491 2.296 29.800 30.224 hybrid contribution 0.453 -0.488 -1.344 1.500 sum -4.037 1.809 28.456 28.798 Atomic orbital electron populations 1.22174 0.91207 1.03799 1.04186 1.19067 0.95615 0.95006 0.75613 0.86157 1.44905 1.71939 1.14431 1.07504 1.15879 0.78085 0.84580 0.80602 1.90903 1.58548 1.15843 1.85137 1.45073 1.70105 1.14637 1.08645 1.21110 1.00265 0.94531 0.81439 1.21602 1.00838 0.97977 0.93670 1.18941 0.95256 0.95075 0.92125 1.21715 1.43477 0.97146 0.95382 0.91723 1.25997 0.95934 0.96745 1.01428 1.70110 1.50100 1.16181 1.21030 0.85394 0.77817 0.79231 0.78567 1.18386 1.20588 1.20608 1.26102 0.99650 0.89978 0.93843 1.74897 1.18258 1.12513 1.10364 1.78637 1.12892 1.16130 1.02004 1.78778 1.18863 0.92268 1.18498 1.48123 1.37136 1.09928 1.10837 1.23128 1.13244 0.73037 0.99522 1.23584 0.95494 1.04513 0.94972 1.23680 0.95657 1.03737 0.95169 0.89338 0.90696 0.91392 0.75136 0.75314 0.92929 0.93022 0.91614 0.91486 0.98709 0.98757 0.92828 0.79970 0.87962 0.83719 0.83230 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.47 71.98 0.68 -1.59 16 2 C 0.26 4.24 2.96 44.24 0.13 4.37 16 3 H 0.12 1.82 6.42 -2.38 -0.02 1.80 16 4 N -0.73 -14.33 5.07 -461.42 -2.34 -16.67 16 5 C 0.71 18.85 8.53 179.05 1.53 20.38 16 6 O -0.62 -20.90 16.01 -3.98 -0.06 -20.96 16 7 N -0.73 -19.09 5.56 -478.53 -2.66 -21.76 16 8 C 0.15 5.06 5.67 86.38 0.49 5.55 16 9 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 10 C 0.02 1.21 4.97 29.85 0.15 1.36 16 11 C -0.54 -29.82 9.11 25.60 0.23 -29.58 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 14 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 15 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C 0.18 3.37 6.91 138.13 0.95 4.32 16 20 N -0.31 -7.29 12.09 -50.46 -0.61 -7.90 16 21 N -0.10 -2.68 13.43 37.01 0.50 -2.18 16 22 N -0.10 -2.14 12.69 37.02 0.47 -1.67 16 23 N -0.26 -4.25 3.67 -317.82 -1.17 -5.42 16 24 C 0.01 0.10 6.58 44.99 0.30 0.39 16 25 C -0.15 -0.76 10.16 30.62 0.31 -0.45 16 26 C -0.14 -0.56 10.46 30.62 0.32 -0.24 16 27 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.41 7.17 8.39 -92.71 -0.78 6.39 16 31 H 0.41 8.43 8.49 -92.71 -0.79 7.64 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.18 0.74 7.23 -2.38 -0.02 0.73 16 40 H 0.10 0.88 7.85 -2.38 -0.02 0.87 16 41 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -75.13 370.35 1.63 -73.49 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -0.52 Total: 12.47 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.72 Total: 1.09 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.53 Total: -111.78 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.13 1.63 -73.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790293849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.355 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds