Wall clock time and date at job start Tue Mar 31 2020 09:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00162 * 2 1 4 4 N 1.34775 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00204 * 175.06052 * 4 2 1 6 6 H 1.08998 * 109.47228 * 184.39724 * 5 4 2 7 7 C 1.50704 * 109.47200 * 304.40034 * 5 4 2 8 8 C 1.38220 * 120.01204 * 104.00897 * 7 5 4 9 9 C 1.38224 * 120.02349 * 179.97438 * 8 7 5 10 10 C 1.38265 * 120.05252 * 0.02604 * 9 8 7 11 11 C 1.38183 * 120.02465 * 359.97438 * 10 9 8 12 12 C 1.38434 * 120.01001 * 283.73579 * 7 5 4 13 13 F 1.35098 * 120.02783 * 359.97438 * 12 7 5 14 14 C 1.53005 * 109.47150 * 64.39743 * 5 4 2 15 15 H 1.08998 * 109.47040 * 300.00097 * 14 5 4 16 16 C 1.52999 * 109.46909 * 60.00330 * 14 5 4 17 17 N 1.46903 * 109.47063 * 180.02562 * 14 5 4 18 18 C 1.46900 * 110.99863 * 155.00342 * 17 14 5 19 19 C 1.52994 * 109.46958 * 179.97438 * 18 17 14 20 20 C 1.50705 * 109.47122 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00027 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99907 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46853 * 60.00132 * 24 22 20 26 26 H 1.48502 * 109.46905 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47208 * 299.99914 * 24 22 20 28 28 H 1.08991 * 109.46928 * 269.99968 * 1 2 3 29 29 H 1.09003 * 109.46783 * 29.99471 * 1 2 3 30 30 H 1.09002 * 109.46788 * 149.99183 * 1 2 3 31 31 H 0.96994 * 119.99873 * 355.05553 * 4 2 1 32 32 H 1.07997 * 119.98932 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.97533 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.99018 * 179.97438 * 10 9 8 35 35 H 1.07996 * 120.01451 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47460 * 60.00024 * 16 14 5 37 37 H 1.08999 * 109.47150 * 180.02562 * 16 14 5 38 38 H 1.09001 * 109.47092 * 299.99732 * 16 14 5 39 39 H 1.00898 * 110.99809 * 278.95058 * 17 14 5 40 40 H 1.09008 * 109.46842 * 299.99840 * 18 17 14 41 41 H 1.08996 * 109.47310 * 59.99377 * 18 17 14 42 42 H 1.08999 * 109.47342 * 299.99425 * 19 18 17 43 43 H 1.08997 * 109.47525 * 60.00123 * 19 18 17 44 44 H 0.97002 * 119.99801 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6418 -1.1695 -0.1098 6 1 3.9999 -2.1972 -0.1717 7 6 4.0541 -0.4183 -1.3494 8 6 4.5691 0.8601 -1.2440 9 6 4.9478 1.5491 -2.3808 10 6 4.8115 0.9609 -3.6246 11 6 4.2969 -0.3170 -3.7325 12 6 3.9224 -1.0105 -2.5938 13 9 3.4248 -2.2622 -2.6976 14 6 4.2464 -0.4921 1.1217 15 1 3.8884 0.5355 1.1837 16 6 3.8279 -1.2548 2.3803 17 7 5.7113 -0.4940 1.0119 18 6 6.2993 0.6011 1.7949 19 6 7.8226 0.5662 1.6565 20 6 8.4258 1.6893 2.4603 21 1 7.7866 2.3610 3.0140 22 6 9.7937 1.8599 2.4879 23 7 10.5721 1.0429 1.8124 24 14 10.5414 3.2525 3.4836 25 1 10.1708 3.0935 4.9128 26 1 12.0199 3.2193 3.3484 27 1 10.0279 4.5518 2.9806 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5140 31 1 1.6986 -2.0056 0.0715 32 1 4.6764 1.3204 -0.2729 33 1 5.3504 2.5477 -2.2974 34 1 5.1073 1.5003 -4.5122 35 1 4.1901 -0.7762 -4.7041 36 1 4.1860 -2.2825 2.3184 37 1 4.2583 -0.7720 3.2577 38 1 2.7410 -1.2531 2.4616 39 1 6.0938 -1.3846 1.2921 40 1 5.9223 1.5550 1.4256 41 1 6.0273 0.4846 2.8439 42 1 8.1992 -0.3875 2.0261 43 1 8.0950 0.6826 0.6076 44 1 11.5344 1.1631 1.8315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926133379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:15 Heat of formation + Delta-G solvation = -60.649156 kcal Electronic energy + Delta-G solvation = -26264.199841 eV Core-core repulsion = 22516.678623 eV Total energy + Delta-G solvation = -3747.521219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.74531 -40.36084 -38.43378 -36.93779 -34.71367 -33.07818 -31.74281 -30.58992 -30.19658 -29.51651 -27.72880 -25.85194 -23.96492 -22.94437 -21.81539 -21.11317 -20.62389 -19.42642 -17.56097 -17.32756 -16.34576 -16.16414 -15.99286 -15.73992 -15.31336 -15.14132 -14.69396 -14.41858 -14.14610 -14.03272 -13.67276 -13.36085 -13.17438 -12.84430 -12.64659 -12.49703 -12.42770 -12.26661 -12.01595 -11.92578 -11.54579 -11.45997 -11.09309 -10.93727 -10.86838 -10.61170 -10.54108 -10.00362 -9.81317 -9.44690 -9.15880 -9.04076 -8.58693 -8.40693 -8.32338 -7.76214 -5.97000 -3.99427 1.38020 1.57130 2.61857 3.17858 3.35239 3.39568 3.42121 3.97977 4.39734 4.46260 4.57120 4.71304 4.81626 4.97012 5.07367 5.14916 5.21578 5.26670 5.31523 5.38983 5.48180 5.50787 5.58623 5.64918 5.71306 5.88801 6.04214 6.13586 6.19117 6.33269 6.36159 6.39843 6.43675 6.49602 6.71071 6.80642 7.01148 7.18964 7.44980 7.49917 7.75208 7.85274 7.98110 8.11311 8.21182 8.46407 9.07698 9.64210 11.14286 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.003940 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.577605 B = 7104.987361 C = 7879.539975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.529 6.529 4 N -0.724 5.724 5 C 0.202 3.798 6 H 0.094 0.906 7 C -0.111 4.111 8 C -0.012 4.012 9 C -0.139 4.139 10 C -0.090 4.090 11 C -0.172 4.172 12 C 0.098 3.902 13 F -0.147 7.147 14 C 0.064 3.936 15 H 0.100 0.900 16 C -0.176 4.176 17 N -0.681 5.681 18 C 0.069 3.931 19 C 0.027 3.973 20 C -0.521 4.521 21 H 0.053 0.947 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.891 3.109 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.400 0.600 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.336 0.664 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.025 0.975 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.360 -6.457 -7.291 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.404 6.404 4 N -0.376 5.376 5 C 0.097 3.903 6 H 0.112 0.888 7 C -0.113 4.113 8 C -0.030 4.030 9 C -0.157 4.157 10 C -0.109 4.109 11 C -0.191 4.191 12 C 0.078 3.922 13 F -0.126 7.126 14 C -0.048 4.048 15 H 0.118 0.882 16 C -0.235 4.235 17 N -0.311 5.311 18 C -0.059 4.059 19 C -0.010 4.010 20 C -0.560 4.560 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.750 -5.418 -7.936 21.964 hybrid contribution 0.127 -0.348 1.425 1.473 sum -19.623 -5.766 -6.510 21.464 Atomic orbital electron populations 1.21894 0.92261 1.04662 1.04469 1.20773 0.90368 0.83771 0.75639 1.90732 1.70329 1.31233 1.48145 1.46094 1.07152 1.08816 1.75574 1.19667 0.78937 0.99394 0.92284 0.88806 1.19697 1.03097 0.96347 0.92162 1.21050 0.90768 0.91892 0.99334 1.21269 1.01149 1.00842 0.92425 1.20943 0.97817 0.94175 0.97943 1.20920 1.04630 0.96359 0.97202 1.17549 1.00177 0.80173 0.94275 1.91425 1.85442 1.38673 1.97023 1.21957 0.89984 1.01178 0.91647 0.88248 1.22432 1.01363 1.00497 0.99233 1.60625 1.02147 1.08121 1.60242 1.22163 0.98581 0.92085 0.93047 1.19045 0.87388 0.96780 0.97819 1.21136 0.91662 1.13641 1.29562 0.92880 1.24982 0.97330 0.96248 0.95672 1.69965 1.04183 1.37425 1.41654 0.86676 0.77997 0.82808 0.80612 1.20339 1.21299 1.20219 0.89118 0.89041 0.90459 0.76585 0.84343 0.85636 0.85701 0.85586 0.92745 0.92258 0.92759 0.84601 0.92421 0.96617 0.96901 0.95612 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.31 36.01 0.37 -0.86 16 2 C 0.51 5.79 7.35 -10.98 -0.08 5.71 16 3 O -0.53 -8.26 13.08 5.55 0.07 -8.19 16 4 N -0.72 -7.31 4.49 -54.93 -0.25 -7.56 16 5 C 0.20 2.61 2.31 -69.08 -0.16 2.45 16 6 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 7 C -0.11 -1.67 4.20 -104.55 -0.44 -2.11 16 8 C -0.01 -0.20 6.92 -39.59 -0.27 -0.47 16 9 C -0.14 -2.09 10.04 -39.58 -0.40 -2.49 16 10 C -0.09 -1.20 10.04 -39.59 -0.40 -1.60 16 11 C -0.17 -2.30 10.03 -39.51 -0.40 -2.69 16 12 C 0.10 1.41 7.25 -39.42 -0.29 1.13 16 13 F -0.15 -2.00 16.73 2.25 0.04 -1.97 16 14 C 0.06 0.93 1.31 -67.71 -0.09 0.84 16 15 H 0.10 1.68 4.71 -51.93 -0.24 1.43 16 16 C -0.18 -2.20 9.01 37.16 0.33 -1.87 16 17 N -0.68 -11.73 4.93 -106.72 -0.53 -12.26 16 18 C 0.07 1.44 5.22 -3.83 -0.02 1.42 16 19 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 20 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 21 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 24 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.40 2.75 8.83 -40.82 -0.36 2.39 16 32 H 0.14 2.51 4.51 -52.49 -0.24 2.27 16 33 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.05 0.62 8.13 -51.93 -0.42 0.19 16 37 H 0.06 0.82 7.46 -51.93 -0.39 0.43 16 38 H 0.05 0.60 7.60 -51.93 -0.39 0.20 16 39 H 0.34 5.62 8.47 -39.29 -0.33 5.29 16 40 H 0.06 1.23 7.16 -51.92 -0.37 0.86 16 41 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -32.61 360.46 -8.38 -40.99 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.48 Total: 6.53 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.39 Total: -13.51 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.04 Total: -46.10 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.61 -8.38 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.655 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds