Wall clock time and date at job start Tue Mar 31 2020 09:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00162 * 2 1 4 4 N 1.34775 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00204 * 175.06052 * 4 2 1 6 6 H 1.08998 * 109.47228 * 184.39724 * 5 4 2 7 7 C 1.50704 * 109.47200 * 304.40034 * 5 4 2 8 8 C 1.38220 * 120.01204 * 104.00897 * 7 5 4 9 9 C 1.38224 * 120.02349 * 179.97438 * 8 7 5 10 10 C 1.38265 * 120.05252 * 0.02604 * 9 8 7 11 11 C 1.38183 * 120.02465 * 359.97438 * 10 9 8 12 12 C 1.38434 * 120.01001 * 283.73579 * 7 5 4 13 13 F 1.35098 * 120.02783 * 359.97438 * 12 7 5 14 14 C 1.53005 * 109.47150 * 64.39743 * 5 4 2 15 15 H 1.08998 * 109.47040 * 300.00097 * 14 5 4 16 16 C 1.52999 * 109.46909 * 60.00330 * 14 5 4 17 17 N 1.46903 * 109.47063 * 180.02562 * 14 5 4 18 18 C 1.46900 * 110.99863 * 155.00342 * 17 14 5 19 19 C 1.52994 * 109.46958 * 179.97438 * 18 17 14 20 20 C 1.50705 * 109.47122 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00027 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99907 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46853 * 60.00132 * 24 22 20 26 26 H 1.48502 * 109.46905 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47208 * 299.99914 * 24 22 20 28 28 H 1.08991 * 109.46928 * 269.99968 * 1 2 3 29 29 H 1.09003 * 109.46783 * 29.99471 * 1 2 3 30 30 H 1.09002 * 109.46788 * 149.99183 * 1 2 3 31 31 H 0.96994 * 119.99873 * 355.05553 * 4 2 1 32 32 H 1.07997 * 119.98932 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.97533 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.99018 * 179.97438 * 10 9 8 35 35 H 1.07996 * 120.01451 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47460 * 60.00024 * 16 14 5 37 37 H 1.08999 * 109.47150 * 180.02562 * 16 14 5 38 38 H 1.09001 * 109.47092 * 299.99732 * 16 14 5 39 39 H 1.00898 * 110.99809 * 278.95058 * 17 14 5 40 40 H 1.09008 * 109.46842 * 299.99840 * 18 17 14 41 41 H 1.08996 * 109.47310 * 59.99377 * 18 17 14 42 42 H 1.08999 * 109.47342 * 299.99425 * 19 18 17 43 43 H 1.08997 * 109.47525 * 60.00123 * 19 18 17 44 44 H 0.97002 * 119.99801 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6418 -1.1695 -0.1098 6 1 3.9999 -2.1972 -0.1717 7 6 4.0541 -0.4183 -1.3494 8 6 4.5691 0.8601 -1.2440 9 6 4.9478 1.5491 -2.3808 10 6 4.8115 0.9609 -3.6246 11 6 4.2969 -0.3170 -3.7325 12 6 3.9224 -1.0105 -2.5938 13 9 3.4248 -2.2622 -2.6976 14 6 4.2464 -0.4921 1.1217 15 1 3.8884 0.5355 1.1837 16 6 3.8279 -1.2548 2.3803 17 7 5.7113 -0.4940 1.0119 18 6 6.2993 0.6011 1.7949 19 6 7.8226 0.5662 1.6565 20 6 8.4258 1.6893 2.4603 21 1 7.7866 2.3610 3.0140 22 6 9.7937 1.8599 2.4879 23 7 10.5721 1.0429 1.8124 24 14 10.5414 3.2525 3.4836 25 1 10.1708 3.0935 4.9128 26 1 12.0199 3.2193 3.3484 27 1 10.0279 4.5518 2.9806 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5140 31 1 1.6986 -2.0056 0.0715 32 1 4.6764 1.3204 -0.2729 33 1 5.3504 2.5477 -2.2974 34 1 5.1073 1.5003 -4.5122 35 1 4.1901 -0.7762 -4.7041 36 1 4.1860 -2.2825 2.3184 37 1 4.2583 -0.7720 3.2577 38 1 2.7410 -1.2531 2.4616 39 1 6.0938 -1.3846 1.2921 40 1 5.9223 1.5550 1.4256 41 1 6.0273 0.4846 2.8439 42 1 8.1992 -0.3875 2.0261 43 1 8.0950 0.6826 0.6076 44 1 11.5344 1.1631 1.8315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926133379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:14 Heat of formation + Delta-G solvation = -82.023986 kcal Electronic energy + Delta-G solvation = -26265.126724 eV Core-core repulsion = 22516.678623 eV Total energy + Delta-G solvation = -3748.448101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.82631 -41.37917 -39.48299 -38.23381 -36.07728 -34.92819 -33.00961 -32.00703 -31.31868 -30.40258 -29.30475 -26.94046 -25.84098 -24.13624 -22.89372 -22.50874 -22.16913 -20.50353 -18.66485 -18.51875 -18.17177 -17.24396 -17.15190 -16.84964 -16.52461 -16.39849 -16.13904 -15.98869 -15.35304 -15.21856 -14.81165 -14.47472 -14.41621 -14.16657 -14.10119 -13.78534 -13.44724 -13.31063 -13.10419 -13.03895 -12.93257 -12.84158 -12.71284 -12.59871 -12.39942 -12.08507 -11.89327 -11.73265 -11.41105 -11.26515 -10.79712 -10.55471 -10.13444 -9.69738 -9.52292 -9.18619 -8.19671 -6.30852 0.27102 0.44948 1.39321 1.42470 1.50346 1.75286 2.28509 2.41069 2.86912 3.13661 3.30298 3.40434 3.55083 3.82764 4.08543 4.09480 4.17465 4.21230 4.37322 4.41348 4.50619 4.50916 4.56314 4.62565 4.66176 4.70312 4.83793 4.98330 5.04071 5.08742 5.11594 5.18116 5.23233 5.27011 5.42901 5.50130 5.55589 5.67710 5.69857 5.80210 6.07137 6.14637 6.27859 6.56157 6.69939 6.85858 7.38080 7.39544 8.92073 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.003940 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.577605 B = 7104.987361 C = 7879.539975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.577 6.577 4 N -0.710 5.710 5 C 0.207 3.793 6 H 0.106 0.894 7 C -0.119 4.119 8 C -0.035 4.035 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.171 4.171 12 C 0.088 3.912 13 F -0.141 7.141 14 C 0.070 3.930 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.682 5.682 18 C 0.093 3.907 19 C 0.037 3.963 20 C -0.545 4.545 21 H 0.056 0.944 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.963 3.037 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.269 1.269 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.340 0.660 40 H 0.047 0.953 41 H 0.016 0.984 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.977 -7.227 -7.514 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.287 3.713 3 O -0.456 6.456 4 N -0.364 5.364 5 C 0.101 3.899 6 H 0.124 0.876 7 C -0.121 4.121 8 C -0.054 4.054 9 C -0.177 4.177 10 C -0.107 4.107 11 C -0.189 4.189 12 C 0.068 3.932 13 F -0.120 7.120 14 C -0.041 4.041 15 H 0.093 0.907 16 C -0.227 4.227 17 N -0.313 5.313 18 C -0.035 4.035 19 C 0.000 4.000 20 C -0.583 4.583 21 H 0.074 0.926 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.011 0.989 43 H 0.012 0.988 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.416 -6.233 -8.154 23.749 hybrid contribution 0.598 -0.137 1.438 1.564 sum -20.819 -6.369 -6.716 22.784 Atomic orbital electron populations 1.21887 0.88570 1.05851 1.05984 1.21612 0.92131 0.83142 0.74372 1.90733 1.71609 1.32975 1.50240 1.45954 1.05864 1.09688 1.74861 1.19506 0.80625 0.99258 0.90532 0.87582 1.19845 1.02850 0.95964 0.93396 1.20936 0.92713 0.93041 0.98681 1.21470 1.01732 1.01243 0.93216 1.21249 0.96977 0.94377 0.98058 1.21291 1.03337 0.96188 0.98110 1.17659 1.00555 0.80538 0.94407 1.91434 1.85360 1.38202 1.96992 1.21888 0.87826 1.00612 0.93804 0.90678 1.22345 1.02559 1.00743 0.97097 1.60482 1.04158 1.07144 1.59476 1.21680 0.95286 0.93116 0.93466 1.18857 0.90737 0.95175 0.95241 1.21559 0.92391 1.14402 1.29988 0.92563 1.25914 0.97817 0.98942 0.96709 1.70098 1.04568 1.39278 1.43004 0.85536 0.77131 0.79351 0.79235 1.19163 1.20648 1.19364 0.87313 0.89480 0.87620 0.74310 0.86949 0.85561 0.82715 0.82847 0.91082 0.93868 0.90799 0.84159 0.93465 0.96534 0.98894 0.98820 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.31 71.24 0.73 -1.19 16 2 C 0.50 10.81 7.35 87.66 0.64 11.46 16 3 O -0.58 -18.39 13.08 -3.04 -0.04 -18.43 16 4 N -0.71 -13.07 4.49 -446.08 -2.00 -15.07 16 5 C 0.21 5.18 2.31 44.25 0.10 5.28 16 6 H 0.11 2.41 8.05 -2.39 -0.02 2.39 16 7 C -0.12 -3.56 4.20 -19.82 -0.08 -3.64 16 8 C -0.04 -1.20 6.92 22.26 0.15 -1.05 16 9 C -0.16 -4.94 10.04 22.27 0.22 -4.71 16 10 C -0.09 -2.26 10.04 22.26 0.22 -2.04 16 11 C -0.17 -4.25 10.03 22.31 0.22 -4.03 16 12 C 0.09 2.43 7.25 22.37 0.16 2.60 16 13 F -0.14 -3.55 16.73 44.97 0.75 -2.80 16 14 C 0.07 2.04 1.31 44.92 0.06 2.10 16 15 H 0.08 2.65 4.71 -2.39 -0.01 2.64 16 16 C -0.17 -4.03 9.01 71.98 0.65 -3.38 16 17 N -0.68 -24.30 4.93 -491.56 -2.42 -26.72 16 18 C 0.09 4.07 5.22 86.30 0.45 4.52 16 19 C 0.04 2.03 5.23 29.85 0.16 2.19 16 20 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 21 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 24 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 4.49 8.83 -92.71 -0.82 3.67 16 32 H 0.11 4.41 4.51 -2.91 -0.01 4.39 16 33 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 37 H 0.04 1.17 7.46 -2.39 -0.02 1.16 16 38 H 0.07 1.47 7.60 -2.39 -0.02 1.45 16 39 H 0.34 11.58 8.47 -89.70 -0.76 10.82 16 40 H 0.05 2.14 7.16 -2.38 -0.02 2.13 16 41 H 0.02 0.71 7.44 -2.39 -0.02 0.69 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -73.30 360.46 2.44 -70.87 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.55 Total: 25.00 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.39 Total: -22.77 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -4.14 Total: -98.96 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.04 Total: -18.43 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.75 Total: -2.80 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.30 2.44 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.159 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds