Wall clock time and date at job start Tue Mar 31 2020 09:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48704 * 2 1 4 4 C 1.53056 * 109.50182 * 120.04778 * 2 1 3 5 5 N 1.46958 * 109.35946 * 178.38342 * 4 2 1 6 6 C 1.39671 * 110.99721 * 176.81388 * 5 4 2 7 7 C 1.38950 * 120.05943 * 67.75337 * 6 5 4 8 8 C 1.38099 * 119.97230 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.09894 * 359.97438 * 8 7 6 10 10 C 1.38492 * 120.12583 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.99085 * 180.02562 * 10 9 8 12 12 C 1.38349 * 120.02420 * 359.76638 * 10 9 8 13 13 C 1.46961 * 110.88102 * 300.67775 * 5 4 2 14 14 C 1.53051 * 109.36229 * 59.32550 * 13 5 4 15 15 N 1.46951 * 109.49302 * 239.94921 * 2 1 3 16 16 C 1.46909 * 110.99858 * 56.82426 * 15 2 1 17 17 C 1.52991 * 109.47208 * 197.28914 * 16 15 2 18 18 H 1.09000 * 109.47002 * 53.51087 * 17 16 15 19 19 O 1.42896 * 109.47274 * 293.51302 * 17 16 15 20 20 C 1.50699 * 109.47186 * 173.50970 * 17 16 15 21 21 H 1.07999 * 120.00091 * 0.02562 * 20 17 16 22 22 C 1.37881 * 120.00188 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00043 * 179.97438 * 22 20 17 24 24 Si 1.86805 * 119.99872 * 0.02562 * 22 20 17 25 25 H 1.48506 * 109.47047 * 89.99378 * 24 22 20 26 26 H 1.48497 * 109.47052 * 209.99507 * 24 22 20 27 27 H 1.48496 * 109.47036 * 329.99692 * 24 22 20 28 28 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47504 * 300.00872 * 1 2 3 30 30 H 1.09004 * 109.46614 * 60.00622 * 1 2 3 31 31 H 1.08993 * 109.49138 * 298.34780 * 4 2 1 32 32 H 1.09001 * 109.48660 * 58.41571 * 4 2 1 33 33 H 1.07997 * 120.01450 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.94800 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.93628 * 180.02562 * 9 8 7 36 36 H 1.07991 * 120.05648 * 180.27911 * 12 10 9 37 37 H 1.09001 * 109.48803 * 299.35691 * 13 5 4 38 38 H 1.08998 * 109.48868 * 179.29247 * 13 5 4 39 39 H 1.09003 * 109.48944 * 181.63204 * 14 13 5 40 40 H 1.08994 * 109.50898 * 61.57607 * 14 13 5 41 41 H 1.08997 * 109.47049 * 317.29175 * 16 15 2 42 42 H 1.09006 * 109.46675 * 77.29172 * 16 15 2 43 43 H 0.96701 * 114.00108 * 299.99637 * 19 17 16 44 44 H 0.96999 * 120.00150 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0409 -0.7224 1.2489 5 7 3.5100 -0.7545 1.2263 6 6 4.0156 -1.3438 2.3873 7 6 3.8139 -2.6978 2.6252 8 6 4.3142 -3.2784 3.7740 9 6 5.0162 -2.5145 4.6880 10 6 5.2196 -1.1645 4.4550 11 9 5.9064 -0.4208 5.3496 12 6 4.7244 -0.5785 3.3037 13 6 4.0004 -1.4483 0.0271 14 6 3.4894 -0.7258 -1.2217 15 7 2.0204 -0.6937 -1.1991 16 6 1.4885 -0.0740 -2.4203 17 6 1.6493 -1.0412 -3.5947 18 1 1.2005 -2.0011 -3.3389 19 8 3.0387 -1.2245 -3.8741 20 6 0.9629 -0.4738 -4.8104 21 1 0.4624 0.4814 -4.7514 22 6 0.9747 -1.1737 -5.9983 23 7 0.3753 -0.6787 -7.0591 24 14 1.8410 -2.8256 -6.1006 25 1 0.8838 -3.9084 -5.7593 26 1 2.3512 -3.0324 -7.4797 27 1 2.9765 -2.8490 -5.1440 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7025 -0.1929 2.1394 32 1 1.6550 -1.7417 1.2628 33 1 3.2662 -3.2959 1.9121 34 1 4.1568 -4.3309 3.9588 35 1 5.4066 -2.9714 5.5853 36 1 4.8866 0.4731 3.1193 37 1 3.6367 -2.4758 0.0272 38 1 5.0904 -1.4479 0.0270 39 1 3.8279 -1.2554 -2.1123 40 1 3.8753 0.2934 -1.2360 41 1 0.4322 0.1558 -2.2807 42 1 2.0358 0.8453 -2.6291 43 1 3.5032 -0.4098 -4.1099 44 1 0.3833 -1.1712 -7.8947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930554962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:01 Heat of formation + Delta-G solvation = -42.547491 kcal Electronic energy + Delta-G solvation = -25820.933453 eV Core-core repulsion = 22074.197181 eV Total energy + Delta-G solvation = -3746.736272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.12599 -40.39918 -38.57654 -36.46799 -34.82711 -32.35377 -32.04996 -31.10706 -30.34863 -28.73590 -27.20134 -25.94093 -23.78545 -23.04856 -22.58134 -21.36665 -20.38275 -19.46223 -17.94349 -17.28640 -16.55920 -16.44026 -15.89045 -15.70637 -15.50185 -15.11704 -14.90851 -14.66179 -14.62035 -14.04987 -13.88614 -13.66326 -13.36136 -13.00328 -12.63539 -12.56424 -12.45365 -12.21441 -11.95445 -11.85095 -11.69408 -11.39849 -11.16087 -10.97128 -10.93196 -10.75661 -10.50631 -10.05108 -9.99600 -9.20535 -9.04259 -8.92814 -8.65177 -8.61206 -8.26909 -7.75303 -6.13663 -4.24929 0.83326 0.94343 3.27154 3.39649 3.48487 3.50360 3.74347 4.13183 4.24292 4.53142 4.58038 4.68298 4.83988 4.86080 5.06994 5.11545 5.19609 5.21401 5.26683 5.38465 5.47646 5.57863 5.64687 5.71516 5.73943 5.80208 5.82028 5.93457 5.96764 6.01945 6.05862 6.14995 6.21097 6.27166 6.41394 6.45428 6.51112 6.73705 6.84400 7.14524 7.27561 7.49662 7.56719 7.73753 8.26824 8.81314 8.98709 9.51126 10.96961 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.003106 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.081730 B = 9012.152290 C = 9443.172639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.043 0.957 4 C 0.072 3.928 5 N -0.510 5.510 6 C 0.127 3.873 7 C -0.159 4.159 8 C -0.081 4.081 9 C -0.162 4.162 10 C 0.102 3.898 11 F -0.140 7.140 12 C -0.134 4.134 13 C 0.063 3.937 14 C 0.043 3.957 15 N -0.531 5.531 16 C 0.037 3.963 17 C 0.202 3.798 18 H 0.062 0.938 19 O -0.577 6.577 20 C -0.564 4.564 21 H 0.070 0.930 22 C 0.083 3.917 23 N -0.894 5.894 24 Si 0.874 3.126 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.217 1.217 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.353 0.647 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 -2.360 22.158 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.061 0.939 4 C -0.054 4.054 5 N -0.232 5.232 6 C 0.033 3.967 7 C -0.179 4.179 8 C -0.100 4.100 9 C -0.181 4.181 10 C 0.082 3.918 11 F -0.119 7.119 12 C -0.153 4.153 13 C -0.064 4.064 14 C -0.085 4.085 15 N -0.257 5.257 16 C -0.091 4.091 17 C 0.145 3.855 18 H 0.080 0.920 19 O -0.384 6.384 20 C -0.602 4.602 21 H 0.088 0.912 22 C -0.121 4.121 23 N -0.531 5.531 24 Si 0.700 3.300 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.139 1.139 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.199 0.801 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.305 -2.951 22.133 23.493 hybrid contribution 0.442 0.032 -0.180 0.478 sum 7.746 -2.919 21.952 23.461 Atomic orbital electron populations 1.21906 0.94063 1.02755 1.01870 1.21633 0.95237 0.95851 0.90207 0.93860 1.22256 0.84792 1.00201 0.98157 1.59825 1.09503 1.53471 1.00382 1.18635 0.95639 0.90752 0.91704 1.21857 1.01688 0.95826 0.98516 1.20887 0.96104 0.99923 0.93098 1.21146 1.02838 0.92386 1.01732 1.17570 0.96098 0.89543 0.88561 1.91503 1.77212 1.76654 1.66518 1.21006 0.99870 1.01574 0.92892 1.22329 0.99442 0.96334 0.88262 1.22644 0.87824 0.99580 0.98448 1.62279 1.08085 1.53456 1.01849 1.22930 1.00008 0.96531 0.89588 1.19778 0.79534 0.95327 0.90888 0.91982 1.86637 1.24715 1.36618 1.90387 1.21491 1.36543 1.07795 0.94325 0.91152 1.25002 0.93649 0.98265 0.95206 1.69958 1.42597 1.39057 1.01473 0.86987 0.82392 0.82826 0.77760 1.21475 1.22461 1.13902 0.91776 0.92654 0.91355 0.90677 0.93416 0.85284 0.85022 0.84859 0.84169 0.93430 0.90546 0.86128 0.95041 0.90130 0.95366 0.80073 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.93 37.16 0.33 -1.56 16 2 C 0.08 1.11 2.56 -67.66 -0.17 0.93 16 3 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.07 0.89 4.68 -3.76 -0.02 0.87 16 5 N -0.51 -6.35 4.68 -170.96 -0.80 -7.15 16 6 C 0.13 1.44 4.72 -83.80 -0.40 1.04 16 7 C -0.16 -1.60 8.68 -39.37 -0.34 -1.94 16 8 C -0.08 -0.69 10.04 -39.62 -0.40 -1.09 16 9 C -0.16 -1.42 10.02 -39.48 -0.40 -1.82 16 10 C 0.10 1.06 7.30 -39.45 -0.29 0.77 16 11 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 12 C -0.13 -1.46 9.95 -39.31 -0.39 -1.85 16 13 C 0.06 0.82 5.26 -3.76 -0.02 0.80 16 14 C 0.04 0.65 5.28 -3.77 -0.02 0.63 16 15 N -0.53 -8.60 4.47 -226.49 -1.01 -9.61 16 16 C 0.04 0.68 4.57 -3.82 -0.02 0.67 16 17 C 0.20 4.50 2.51 -27.89 -0.07 4.43 16 18 H 0.06 1.48 7.57 -51.93 -0.39 1.09 16 19 O -0.58 -12.12 7.12 -35.23 -0.25 -12.37 16 20 C -0.56 -15.17 9.34 -34.44 -0.32 -15.49 16 21 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 22 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 23 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 24 Si 0.87 21.48 26.99 -169.99 -4.59 16.89 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.22 -5.14 5.31 56.52 0.30 -4.84 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.94 6.02 -51.93 -0.31 0.63 16 31 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 32 H 0.05 0.60 7.68 -51.93 -0.40 0.20 16 33 H 0.13 1.28 7.05 -52.49 -0.37 0.91 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.05 0.64 7.05 -51.93 -0.37 0.27 16 38 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.12 2.00 5.21 -51.93 -0.27 1.73 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.52 5.45 -51.93 -0.28 1.24 16 42 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 43 H 0.35 6.64 9.04 45.56 0.41 7.05 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -29.77 345.70 -9.10 -38.87 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.86 Total: 7.17 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.61 Total: -11.35 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.04 Total: -42.92 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.25 Total: -12.37 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.59 Total: 16.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.77 -9.10 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930554962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.676 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds